Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

60944858 .. 60948346

Gene Structure 3489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0455700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGAATGGGGGACCTGACAGACCAAAGGGGTAGAGGGGAGTGCTTGGGAAGGAGGCAGAGGGGCAGCAGAGCAGTGAGTAGCGCAGCGAAGTCCCATTGGGCAAAATGGCTTTTCTTTTCAACAAGTTTCAGGAGGCTGTCAAAGTTCTTGCGAAAAATTCCCCTATGCTTGCCAAGAATCCTAGGAAACTACAATTTGAGGCAGATATTAACCGCCTTTTCCTATATACCAGATGTGCCTGAGACAAGGCCATTAGAACGCGCTGATGTATCTCAAAAATTGAAAGATCTCATTGGCTACACTCTCGATATCAAACCTTCTCAGATACCCCATAAGGAAGCAGGCCAAGGTTTATTTTTAAATGGTGAATGTGATGTTGGTGCTGTGGTGGCTGTGTACCCTGGTGTAATATACTCCCCAGCATATTACCGTTACATTCCTGGATATCCAAGAGTTGATGCACAGAACTCATATCTGATCACAAGGTATGATGGAACTGTGATCAATGCCAAACCTTGGGGTTCTGGGGGTGAAACACGTGATTTCTGGGATGGGTTAACAGTACCAGAGATCAGACCTAATATGCAAGGAGATGAGAAAGGTTCAGATCGGCTCTTGAAGCTCTTAAGTAAGCCTTTGGATGGCAGGCGACTGGGAAAGAGTGGCGACATTATAGAGCGGAGGAACCCTTTAGCTTTGGCTCATTTTGCCAACCACCCAGCAAAGGGTGTGGAGCCGAATGTAATGATTTGCCCTTATGACTTCCCATTAACCGAAAAGGAAATGAGAGTTTATATTCCGAATGTAGTTTTTGGAAATGCAGAAGAAGTGAAGATGAAGAAATTTGGGAGCTTTTGGTTGAAACTTGGGAGTTCAAGAAATAGCGGATCAGATGTTCCTGTTTTGAAGACCCTTGTTATGGTAGCTACAAGGGCACTTTGTGATGAAGAAGTGCTTTTGAACTACAGGTTGAGCAACTCTAAGCGTCGGCCAGAGTGGTATAGTCCAGTCAATGAGGAGGAAGACCGAAGAAGGTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

348

Amino Acids

39.49

Weight (kDa)

9.53

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	519
AccBSI	CCGCTC	1 cut(s)	682
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	216, 682, 888
AclWI	GGATC	1 cut(s)	898
AcoI	YGGCCR	1 cut(s)	992
AcsI	RAATTY	2 cut(s)	159, 845
AcvI	CACGTG	1 cut(s)	542
AdeI	CACNNNGTG	1 cut(s)	944
AfaI	GTAC	2 cut(s)	401, 567
AfiI	CCNNNNNNNGG	5 cut(s)	519, 644, 727, 728, 922
AflII	CTTAAG	1 cut(s)	628
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	7 cut(s)	123, 286, 622, 865, 879, 910, 964
AjnI	CCWGG	2 cut(s)	403, 442
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AloI	GAACNNNNNNTCC	2 cut(s)	882, 914
AluBI	AGCT	5 cut(s)	625, 698, 855, 929, 1044
AluI	AGCT	5 cut(s)	625, 698, 855, 929, 1044
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	898
AoxI	GGCC	3 cut(s)	251, 346, 992
ApeKI	GCWGC	2 cut(s)	66, 86
ApoI	RAATTY	2 cut(s)	159, 845
AspA2I	CCTAGG	1 cut(s)	184
AspLEI	GCGC	2 cut(s)	86, 266
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	380, 545
AvaII	GGWCC	1 cut(s)	13
AvrII	CCTAGG	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	940
BbrPI	CACGTG	1 cut(s)	542
BbsI	GAAGAC	2 cut(s)	917, 1032
BbvI	GCAGC	2 cut(s)	78, 98
BccI	CCATC	3 cut(s)	488, 548, 638
BciT130I	CCWGG	2 cut(s)	405, 444
BclI	TGATCA	2 cut(s)	480, 504
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	967
BfrI	CTTAAG	1 cut(s)	628
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	2 cut(s)	67, 87
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	2 cut(s)	68, 88
Bme1390I	CCNGG	2 cut(s)	405, 444
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	3 cut(s)	14, 689, 738
BmrFI	CCNGG	2 cut(s)	405, 444
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	1 cut(s)	451
BmuI	ACTGGG	1 cut(s)	665
BpiI	GAAGAC	2 cut(s)	917, 1032
BsaAI	YACGTR	1 cut(s)	542
BsaJI	CCNNGG	4 cut(s)	184, 349, 403, 518
Bsc4I	CCNNNNNNNGG	5 cut(s)	519, 644, 727, 728, 922
Bse1I	ACTGG	2 cut(s)	660, 1010
BseBI	CCWGG	2 cut(s)	405, 444
BseDI	CCNNGG	4 cut(s)	184, 349, 403, 518
BseGI	GGATG	2 cut(s)	559, 649
BseLI	CCNNNNNNNGG	5 cut(s)	519, 644, 727, 728, 922
BseMII	CTCAG	2 cut(s)	234, 338
BseNI	ACTGG	2 cut(s)	660, 1010
BseRI	GAGGAG	1 cut(s)	1034
BseSI	GKGCMC	1 cut(s)	940
BseXI	GCAGC	2 cut(s)	78, 98
BseYI	CCCAGC	2 cut(s)	421, 721
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	253, 348, 994
BslFI	GGGAC	2 cut(s)	26, 79
BslI	CCNNNNNNNGG	5 cut(s)	519, 644, 727, 728, 922
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	2 cut(s)	26, 79
BsnI	GGCC	3 cut(s)	253, 348, 994
Bsp1286I	GDGCHC	1 cut(s)	940
Bsp143I	GATC	6 cut(s)	289, 480, 504, 573, 610, 890
BspACI	CCGC	3 cut(s)	216, 682, 888
BspANI	GGCC	3 cut(s)	253, 348, 994
BspCNI	CTCAG	2 cut(s)	235, 337
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	3 cut(s)	14, 689, 738
BspPI	GGATC	1 cut(s)	898
BspTI	CTTAAG	1 cut(s)	628
BsrBI	CCGCTC	1 cut(s)	682
BsrI	ACTGG	2 cut(s)	660, 1010
BssECI	CCNNGG	4 cut(s)	184, 349, 403, 518
BssMI	GATC	6 cut(s)	289, 480, 504, 573, 610, 890
BssT1I	CCWWGG	3 cut(s)	184, 349, 518
Bst2UI	CCWGG	2 cut(s)	405, 444
Bst4CI	ACNGT	3 cut(s)	434, 502, 565
BstAFI	CTTAAG	1 cut(s)	628
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	173, 346, 650
BstDEI	CTNAG	3 cut(s)	243, 324, 984
BstF5I	GGATG	2 cut(s)	559, 649
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	86, 266
BstKTI	GATC	6 cut(s)	292, 483, 507, 576, 613, 893
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	6 cut(s)	289, 480, 504, 573, 610, 890
BstMWI	GCNNNNNNNGC	4 cut(s)	392, 622, 710, 935
BstNI	CCWGG	2 cut(s)	405, 444
BstSCI	CCNGG	2 cut(s)	403, 442
BstSFI	CTRYAG	1 cut(s)	967
BstSLI	GKGCMC	1 cut(s)	940
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	78, 98
BstV2I	GAAGAC	2 cut(s)	917, 1032
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	253, 348, 994
BtsCI	GGATG	2 cut(s)	559, 649
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	3 cut(s)	173, 346, 650
CfoI	GCGC	2 cut(s)	86, 266
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	2 cut(s)	400, 566
CspCI	CAANNNNNGTGG	2 cut(s)	714, 749
CviQI	GTAC	2 cut(s)	400, 566
DdeI	CTNAG	3 cut(s)	243, 324, 984
DpnI	GATC	6 cut(s)	291, 482, 506, 575, 612, 892
DpnII	GATC	6 cut(s)	289, 480, 504, 573, 610, 890
DraI	TTTAAA	1 cut(s)	363
DraIII	CACNNNGTG	1 cut(s)	944
EaeI	YGGCCR	1 cut(s)	992
Eco130I	CCWWGG	3 cut(s)	184, 349, 518
Eco32I	GATATC	2 cut(s)	313, 449
Eco47I	GGWCC	1 cut(s)	13
Eco72I	CACGTG	1 cut(s)	542
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	403, 442
EcoRV	GATATC	2 cut(s)	313, 449
EcoT14I	CCWWGG	3 cut(s)	184, 349, 518
ErhI	CCWWGG	3 cut(s)	184, 349, 518
FalI	AAGNNNNNCTT	4 cut(s)	622, 654, 942, 974
FaqI	GGGAC	2 cut(s)	26, 79
FbaI	TGATCA	2 cut(s)	480, 504
Fnu4HI	GCNGC	2 cut(s)	67, 87
FokI	GGATG	2 cut(s)	566, 656
Fsp4HI	GCNGC	2 cut(s)	67, 87
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	2 cut(s)	85, 265
GluI	GCNGC	2 cut(s)	67, 87
GsaI	CCCAGC	2 cut(s)	425, 725
HaeIII	GGCC	3 cut(s)	253, 348, 994
HgaI	GACGC	1 cut(s)	977
HhaI	GCGC	2 cut(s)	86, 266
Hin6I	GCGC	2 cut(s)	84, 264
HinP1I	GCGC	2 cut(s)	84, 264
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	1 cut(s)	180
HpaI	GTTAAC	1 cut(s)	561
HphI	GGTGA	2 cut(s)	380, 545
Hpy166II	GTNNAC	2 cut(s)	400, 561
Hpy188I	TCNGA	6 cut(s)	327, 480, 578, 610, 804, 895
Hpy188III	TCNNGA	4 cut(s)	133, 308, 619, 879
Hpy8I	GTNNAC	2 cut(s)	400, 561
Hpy99I	CGWCG	1 cut(s)	993
HpyAV	CCTTC	3 cut(s)	45, 330, 1029
HpyCH4III	ACNGT	3 cut(s)	434, 502, 565
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	3 cut(s)	464, 589, 824
HpyF10VI	GCNNNNNNNGC	4 cut(s)	392, 622, 710, 935
HpyF3I	CTNAG	3 cut(s)	243, 324, 984
HpySE526I	ACGT	1 cut(s)	541
HspAI	GCGC	2 cut(s)	84, 264
Ksp22I	TGATCA	2 cut(s)	480, 504
KspAI	GTTAAC	1 cut(s)	561
Kzo9I	GATC	6 cut(s)	289, 480, 504, 573, 610, 890
LmnI	GCTCC	3 cut(s)	736, 852, 1041
Lsp1109I	GCAGC	2 cut(s)	78, 98
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	6 cut(s)	291, 482, 506, 575, 612, 892
MbiI	CCGCTC	1 cut(s)	682
MboI	GATC	6 cut(s)	289, 480, 504, 573, 610, 890
MboII	GAAGA	7 cut(s)	839, 847, 853, 922, 962, 1037, 1044
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	940
MluCI	AATT	4 cut(s)	159, 196, 281, 845
MnlI	CCTC	8 cut(s)	29, 48, 54, 129, 195, 678, 1012, 1015
MseI	TTAA	5 cut(s)	212, 362, 560, 629, 773
MspCI	CTTAAG	1 cut(s)	628
MspR9I	CCNGG	2 cut(s)	405, 444
MvaI	CCWGG	2 cut(s)	405, 444
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	392, 622, 710, 935
NdeII	GATC	6 cut(s)	289, 480, 504, 573, 610, 890
NlaIV	GGNNCC	3 cut(s)	14, 689, 738
PfeI	GAWTC	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	519
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	68, 88
PmaCI	CACGTG	1 cut(s)	542
PmlI	CACGTG	1 cut(s)	542
Ppu21I	YACGTR	1 cut(s)	542
PpuMI	RGGWCCY	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	403, 442
PspCI	CACGTG	1 cut(s)	542
PspFI	CCCAGC	2 cut(s)	421, 721
PspGI	CCWGG	2 cut(s)	403, 442
PspN4I	GGNNCC	3 cut(s)	14, 689, 738
PspPI	GGNCC	1 cut(s)	13
PspPPI	RGGWCCY	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	2 cut(s)	401, 567
RsaNI	GTAC	2 cut(s)	400, 566
SaqAI	TTAA	5 cut(s)	212, 362, 560, 629, 773
SatI	GCNGC	2 cut(s)	67, 87
Sau3AI	GATC	6 cut(s)	289, 480, 504, 573, 610, 890
Sau96I	GGNCC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	405, 444
SduI	GDGCHC	1 cut(s)	940
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	1 cut(s)	967
SinI	GGWCC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	4 cut(s)	159, 196, 281, 845
SsiI	CCGC	3 cut(s)	216, 682, 888
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	403, 442
StyI	CCWWGG	3 cut(s)	184, 349, 518
TaaI	ACNGT	3 cut(s)	434, 502, 565
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	1 cut(s)	309
TaqII	GACCGA	1 cut(s)	1044
TasI	AATT	4 cut(s)	159, 196, 281, 845
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	5 cut(s)	212, 362, 560, 629, 773
Tru9I	TTAA	5 cut(s)	212, 362, 560, 629, 773
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	2 cut(s)	66, 86
TspDTI	ATGAA	2 cut(s)	854, 963
TspRI	CASTG	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	519
Vha464I	CTTAAG	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	2 cut(s)	159, 845
XmaJI	CCTAGG	1 cut(s)	184
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.