Rorug02G0507500

Cell division control protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003461
Physical Location & Seq
Forward (+)
63881434 .. 63883695
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0507500.1

Sequence Viewer

Length: 381 bp
ATGGGTAGGCACAGCTCTGATCCGATTATGGTTAGTTCTTCCATTGCTCTCTTGCAAGAGAGGTTCAGACAGTTGCAGAAAGTGAAGGAGAGGAGGGAGGAGCAACAGCTTCTGCAGTTTTTGTCCGAGACAGAAAGGGTTGCACCTTCAACGAGGCATTTTGAGCCTGCAAGGCCCTCTTTCCAATCTGATATGGTGCTTCCTCCCAGGCCGTGTACTCCTGCAGCAGACTCATCACTCTCTCTGGGGCTCAATTTGCAGCCTAAACAAGTTGATTATTGTGTCATGAAGACTGCACATCCATTCTCAACCTCATCAACCACAACAAGTGCTTCAAGAAAATATGACAATTCAGAGCTTGATACCTCTCTTCATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

126

Amino Acids

14.22

Weight (kDa)

7.85

Isoelectric Point (pI)

71.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 14
AfaI GTAC 1 cut(s) 217
AgsI TTSAA 2 cut(s) 150, 336
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 3 cut(s) 15, 109, 358
AluI AGCT 3 cut(s) 15, 109, 358
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 2 cut(s) 173, 209
ApeKI GCWGC 2 cut(s) 224, 259
AspS9I GGNCC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 236, 271
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 122
BfmI CTRYAG 2 cut(s) 113, 222
BglI GCCNNNNNGGC 1 cut(s) 172
BisI GCNGC 2 cut(s) 225, 260
BlsI GCNGC 2 cut(s) 226, 261
Bme1390I CCNGG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 42
BseRI GAGGAG 2 cut(s) 106, 113
BseXI GCAGC 2 cut(s) 236, 271
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 2 cut(s) 175, 211
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 2 cut(s) 175, 211
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 19
BspANI GGCC 2 cut(s) 175, 211
BspHI TCATGA 1 cut(s) 285
BspMAI CTGCAG 2 cut(s) 117, 226
BspPI GGATC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 168
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 3 cut(s) 163, 172, 256
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 2 cut(s) 113, 222
BstV1I GCAGC 2 cut(s) 236, 271
BstV2I GAAGAC 1 cut(s) 296
BsuRI GGCC 2 cut(s) 175, 211
BtsCI GGATG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 112
CciI TCATGA 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 216
CviAII CATG 1 cut(s) 286
CviJI RGCY 8 cut(s) 15, 109, 166, 175, 211, 250, 262, 358
CviKI_1 RGCY 8 cut(s) 15, 109, 166, 175, 211, 250, 262, 358
CviQI GTAC 1 cut(s) 216
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 1 cut(s) 289
FaiI YATR 5 cut(s) 29, 194, 287, 345, 379
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 225, 260
FokI GGATG 1 cut(s) 285
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 2 cut(s) 225, 260
GluI GCNGC 2 cut(s) 225, 260
HaeIII GGCC 2 cut(s) 175, 211
Hin1II CATG 1 cut(s) 289
HinfI GANTC 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 6 cut(s) 19, 24, 68, 127, 190, 355
Hpy188III TCNNGA 2 cut(s) 286, 336
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 2 cut(s) 79, 156
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 8 cut(s) 55, 76, 115, 143, 170, 224, 259, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 172, 256
Hsp92II CATG 1 cut(s) 289
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 180, 193, 220, 230, 234
Lsp1109I GCAGC 2 cut(s) 236, 271
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 3 cut(s) 30, 301, 362
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 2 cut(s) 253, 349
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 9 cut(s) 54, 84, 87, 91, 147, 187, 213, 322, 376
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 3 cut(s) 163, 172, 256
NdeII GATC 1 cut(s) 19
NlaIII CATG 1 cut(s) 289
PagI TCATGA 1 cut(s) 285
PkrI GCNGC 2 cut(s) 226, 261
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspPI GGNCC 1 cut(s) 174
PstI CTGCAG 2 cut(s) 117, 226
PstNI CAGNNNCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SatI GCNGC 2 cut(s) 225, 260
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 17, 65, 111, 148, 314, 360, 368
SfcI CTRYAG 2 cut(s) 113, 222
Sse9I AATT 2 cut(s) 253, 349
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 72
TasI AATT 2 cut(s) 253, 349
TatI WGTACW 1 cut(s) 215
TseI GCWGC 2 cut(s) 224, 259
TspDTI ATGAA 2 cut(s) 302, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.