Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Reverse (-)

26463813 .. 26466534

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGACGATTACGACATATCGCCGGAGATTCTGAGAGAAGAACCACACGGCCGCGTGTACAAAGCCACGTTCAAACCCACCGGCGAGACCGTCGTCATCAAGAAGATCCCGTCCGACGCTAACTTCCCAAACGGCGTACCTCCCGCCCTCTCCCGCGAGATTCTAATCTACCAGAAGCTTCCTAAGTCCGCTTACGTCATCGATCGCCGCCACGTGTTCCGCCAGTTCGAGGACGGCGGCCCCGCCTTCTACATTGTCTACGAGCACCTCGACACCGATCTGGCCGCCTTCATCGCAGCCTCCGACAGTCCCTTGCCGTCCGATATGGTCAAGAAGCTTCTCTTCCAGCTCCTCAAGGGCGTCGACCACTGTCACTGTAACGGCATCCTCCACCAGAACCTAAACCCCAAGAATCTGCTGCTTGACCTGAAACAACAGAGCCTCAAGATCGGCGATAGGATCAGTCAGTCTTTTGCTTTCTGCTACGAGACTTTTGTGCCGGAGACGGTCACTCTCTCTTACCAGGCGCCGGAGGTTTTGCTGGGGTCCACCGATTTCTCGACTCCGGCGGACATTTGGGCCGTCGGATGCATCTTCGCTGAGATGGTGACTGGGAATGTACTGTTTGTCAGAATCGGTGGTGATCCTAATCAAGCTGATAAGCAGCAATTGCGTGAGATTTTCAGACAGCTAGGCAAACCAATGTTGAATCAGTGTCCAGGACTCACTTCGTTGCCGGCTTGGGAGACCTACCAAGAATGGGAAGGGGAAAAGATGAAAGCTCGGTTCTATTCGGCAGGAGATTTGCCATCGGATCTGCTGGTAGCTACAGTTTCTTTGGAACAAGATGGAGCTGAACTTCTATCGAAAATGCTTACATTTGATCCAGATGAAAGAATCACAGCTAAAGCAGCCCTGAACCACCCCTATTTCAGGCAAATGGACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

317

Amino Acids

35.56

Weight (kDa)

5.15

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	16 - 205	3e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	17 - 311	3.2e-42	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	526
AccI	GTMKAC	2 cut(s)	258, 363
AccII	CGCG	2 cut(s)	54, 156
AclWI	GGATC	5 cut(s)	100, 467, 638, 822, 878
AcoI	YGGCCR	2 cut(s)	49, 282
AcvI	CACGTG	1 cut(s)	214
AcyI	GRCGYC	2 cut(s)	360, 527
AfaI	GTAC	3 cut(s)	59, 138, 621
AfiI	CCNNNNNNNGG	4 cut(s)	229, 529, 760, 933
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	73, 709
AjnI	CCWGG	2 cut(s)	522, 718
AluBI	AGCT	9 cut(s)	178, 337, 349, 656, 691, 782, 827, 854, 905
AluI	AGCT	9 cut(s)	178, 337, 349, 656, 691, 782, 827, 854, 905
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	4 cut(s)	80, 482, 497, 740
AlwI	GGATC	5 cut(s)	100, 467, 638, 822, 878
AoxI	GGCC	4 cut(s)	49, 238, 282, 579
ApeKI	GCWGC	4 cut(s)	296, 418, 664, 911
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	3 cut(s)	239, 546, 579
AsuHPI	GGTGA	2 cut(s)	619, 653
AvaII	GGWCC	1 cut(s)	546
BanI	GGYRCC	1 cut(s)	526
BbrPI	CACGTG	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	308, 405, 676, 923
BccI	CCATC	3 cut(s)	598, 817, 842
BceAI	ACGGC	6 cut(s)	64, 148, 250, 301, 397, 566
BciT130I	CCWGG	2 cut(s)	524, 720
BcoDI	GTCTC	4 cut(s)	80, 482, 497, 740
BfaI	CTAG	1 cut(s)	692
BfmI	CTRYAG	1 cut(s)	828
BfoI	RGCGCY	1 cut(s)	530
BisI	GCNGC	8 cut(s)	52, 208, 238, 285, 297, 419, 665, 912
BlsI	GCNGC	8 cut(s)	53, 209, 239, 286, 298, 420, 666, 913
Bme1390I	CCNGG	2 cut(s)	524, 720
Bme18I	GGWCC	1 cut(s)	546
BmgT120I	GGNCC	3 cut(s)	239, 546, 579
BmiI	GGNNCC	3 cut(s)	241, 528, 547
BmrFI	CCNGG	2 cut(s)	524, 720
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	3 cut(s)	393, 578, 600
BmuI	ACTGGG	1 cut(s)	621
BoxI	GACNNNNGTC	2 cut(s)	92, 369
BpuEI	CTTGAG	2 cut(s)	338, 428
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	214
BsaBI	GATNNNNATC	2 cut(s)	164, 648
BsaHI	GRCGYC	2 cut(s)	360, 527
BsaI	GGTCTC	2 cut(s)	80, 740
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 529, 760, 933
Bse118I	RCCGGY	2 cut(s)	80, 736
Bse1I	ACTGG	2 cut(s)	223, 616
Bse8I	GATNNNNATC	2 cut(s)	164, 648
BseBI	CCWGG	2 cut(s)	524, 720
BseCI	ATCGAT	1 cut(s)	201
BseGI	GGATG	2 cut(s)	384, 593
BseJI	GATNNNNATC	2 cut(s)	164, 648
BseLI	CCNNNNNNNGG	4 cut(s)	229, 529, 760, 933
BseMII	CTCAG	2 cut(s)	23, 591
BseNI	ACTGG	2 cut(s)	223, 616
BseRI	GAGGAG	1 cut(s)	341
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	4 cut(s)	308, 405, 676, 923
BseYI	CCCAGC	1 cut(s)	541
Bsh1236I	CGCG	2 cut(s)	54, 156
Bsh1285I	CGRYCG	2 cut(s)	52, 205
BshFI	GGCC	4 cut(s)	51, 240, 284, 581
BshNI	GGYRCC	1 cut(s)	526
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	2 cut(s)	52, 205
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	6 cut(s)	23, 81, 500, 530, 566, 737
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	4 cut(s)	229, 529, 760, 933
BsmAI	GTCTC	4 cut(s)	80, 482, 497, 740
BsmBI	CGTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	4 cut(s)	51, 240, 284, 581
Bso31I	GGTCTC	2 cut(s)	80, 740
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	8 cut(s)	105, 202, 277, 447, 459, 643, 814, 883
BspANI	GGCC	4 cut(s)	51, 240, 284, 581
BspCNI	CTCAG	2 cut(s)	24, 592
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	2 cut(s)	54, 156
BspLI	GGNNCC	3 cut(s)	241, 528, 547
BspPI	GGATC	5 cut(s)	100, 467, 638, 822, 878
BspT107I	GGYRCC	1 cut(s)	526
BspTNI	GGTCTC	2 cut(s)	80, 740
BsrFI	RCCGGY	2 cut(s)	80, 736
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	223, 616
BssAI	RCCGGY	2 cut(s)	80, 736
BssMI	GATC	8 cut(s)	105, 202, 277, 447, 459, 643, 814, 883
BssNI	GRCGYC	2 cut(s)	360, 527
Bst2UI	CCWGG	2 cut(s)	524, 720
Bst4CI	ACNGT	7 cut(s)	91, 308, 371, 377, 508, 624, 832
Bst6I	CTCTTC	1 cut(s)	347
BstACI	GRCGYC	2 cut(s)	360, 527
BstAPI	GCANNNNNTGC	1 cut(s)	670
BstAUI	TGTACA	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	738
BstDEI	CTNAG	3 cut(s)	32, 183, 600
BstENI	CCTNNNNNAGG	1 cut(s)	931
BstF5I	GGATG	2 cut(s)	384, 593
BstFNI	CGCG	2 cut(s)	54, 156
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	8 cut(s)	108, 205, 280, 450, 462, 646, 817, 886
BstMAI	GTCTC	4 cut(s)	80, 482, 497, 740
BstMBI	GATC	8 cut(s)	105, 202, 277, 447, 459, 643, 814, 883
BstMCI	CGRYCG	2 cut(s)	52, 205
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 670, 911
BstNI	CCWGG	2 cut(s)	524, 720
BstPAI	GACNNNNGTC	2 cut(s)	92, 369
BstSCI	CCNGG	2 cut(s)	522, 718
BstSFI	CTRYAG	1 cut(s)	828
BstUI	CGCG	2 cut(s)	54, 156
BstV1I	GCAGC	4 cut(s)	308, 405, 676, 923
BstX2I	RGATCY	2 cut(s)	105, 814
BstYI	RGATCY	2 cut(s)	105, 814
BstZI	CGGCCG	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	51, 240, 284, 581
BsuTUI	ATCGAT	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	384, 593
BtsIMutI	CAGTG	3 cut(s)	367, 373, 719
Cac8I	GCNNGC	1 cut(s)	738
CfoI	GCGC	1 cut(s)	529
Cfr10I	RCCGGY	2 cut(s)	80, 736
Cfr13I	GGNCC	3 cut(s)	239, 546, 579
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	2 cut(s)	125, 349
Csp6I	GTAC	3 cut(s)	58, 137, 620
CviQI	GTAC	3 cut(s)	58, 137, 620
DdeI	CTNAG	3 cut(s)	32, 183, 600
DinI	GGCGCC	1 cut(s)	528
DpnI	GATC	8 cut(s)	107, 204, 279, 449, 461, 645, 816, 885
DpnII	GATC	8 cut(s)	105, 202, 277, 447, 459, 643, 814, 883
EaeI	YGGCCR	2 cut(s)	49, 282
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
EciI	GGCGGA	2 cut(s)	209, 584
EclXI	CGGCCG	1 cut(s)	49
Eco31I	GGTCTC	2 cut(s)	80, 740
Eco47I	GGWCC	1 cut(s)	546
Eco52I	CGGCCG	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	214
EcoNI	CCTNNNNNAGG	1 cut(s)	931
EcoRII	CCWGG	2 cut(s)	522, 718
EcoT22I	ATGCAT	1 cut(s)	593
EgeI	GGCGCC	1 cut(s)	528
EheI	GGCGCC	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	497
FaiI	YATR	2 cut(s)	17, 326
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	294
FauI	CCCGC	3 cut(s)	151, 161, 250
FblI	GTMKAC	2 cut(s)	258, 363
Fnu4HI	GCNGC	8 cut(s)	52, 208, 238, 285, 297, 419, 665, 912
FokI	GGATG	2 cut(s)	371, 600
Fsp4HI	GCNGC	8 cut(s)	52, 208, 238, 285, 297, 419, 665, 912
FspBI	CTAG	1 cut(s)	692
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	8 cut(s)	52, 208, 238, 285, 297, 419, 665, 912
GsaI	CCCAGC	1 cut(s)	545
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	4 cut(s)	51, 240, 284, 581
HapII	CCGG	6 cut(s)	23, 81, 500, 530, 566, 737
HgaI	GACGC	2 cut(s)	125, 349
HhaI	GCGC	1 cut(s)	529
Hin1I	GRCGYC	2 cut(s)	360, 527
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	2 cut(s)	176, 335
HinfI	GANTC	8 cut(s)	28, 160, 412, 562, 633, 709, 723, 897
HpaII	CCGG	6 cut(s)	23, 81, 500, 530, 566, 737
HphI	GGTGA	2 cut(s)	619, 653
Hpy166II	GTNNAC	4 cut(s)	58, 259, 364, 549
Hpy188I	TCNGA	8 cut(s)	33, 115, 304, 322, 587, 632, 686, 814
Hpy188III	TCNNGA	5 cut(s)	100, 331, 445, 559, 887
Hpy8I	GTNNAC	4 cut(s)	58, 259, 364, 549
Hpy99I	CGWCG	4 cut(s)	95, 119, 365, 587
HpyAV	CCTTC	3 cut(s)	256, 298, 758
HpyCH4III	ACNGT	7 cut(s)	91, 308, 371, 377, 508, 624, 832
HpyCH4IV	ACGT	3 cut(s)	68, 195, 213
HpyCH4V	TGCA	1 cut(s)	591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 670, 911
HpyF3I	CTNAG	3 cut(s)	32, 183, 600
HpySE526I	ACGT	3 cut(s)	68, 195, 213
Hsp92I	GRCGYC	2 cut(s)	360, 527
HspAI	GCGC	1 cut(s)	527
KasI	GGCGCC	1 cut(s)	526
KroI	GCCGGC	1 cut(s)	736
KroNI	GCCGGC	1 cut(s)	738
Kzo9I	GATC	8 cut(s)	105, 202, 277, 447, 459, 643, 814, 883
LmnI	GCTCC	2 cut(s)	354, 851
Lsp1109I	GCAGC	4 cut(s)	308, 405, 676, 923
LweI	GCATC	3 cut(s)	393, 578, 600
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	3 cut(s)	68, 195, 213
MaeIII	GTNAC	4 cut(s)	371, 377, 508, 607
MalI	GATC	8 cut(s)	107, 204, 279, 449, 461, 645, 816, 885
MboI	GATC	8 cut(s)	105, 202, 277, 447, 459, 643, 814, 883
MboII	GAAGA	4 cut(s)	50, 115, 334, 586
MfeI	CAATTG	1 cut(s)	668
MflI	RGATCY	2 cut(s)	105, 814
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	1 cut(s)	668
Mly113I	GGCGCC	1 cut(s)	527
MlyI	GAGTC	2 cut(s)	556, 717
MmeI	TCCRAC	3 cut(s)	138, 327, 565
MnlI	CCTC	9 cut(s)	150, 158, 223, 278, 310, 362, 398, 452, 526
Mph1103I	ATGCAT	1 cut(s)	593
MroNI	GCCGGC	1 cut(s)	736
MspI	CCGG	6 cut(s)	23, 81, 500, 530, 566, 737
MspR9I	CCNGG	2 cut(s)	524, 720
MunI	CAATTG	1 cut(s)	668
MvaI	CCWGG	2 cut(s)	524, 720
MvnI	CGCG	2 cut(s)	54, 156
MwoI	GCNNNNNNNGC	3 cut(s)	293, 670, 911
NaeI	GCCGGC	1 cut(s)	738
NarI	GGCGCC	1 cut(s)	527
NdeII	GATC	8 cut(s)	105, 202, 277, 447, 459, 643, 814, 883
NgoMIV	GCCGGC	1 cut(s)	736
NlaIV	GGNNCC	3 cut(s)	241, 528, 547
NmuCI	GTSAC	3 cut(s)	371, 508, 607
NsiI	ATGCAT	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 300
PdiI	GCCGGC	1 cut(s)	738
PfeI	GAWTC	6 cut(s)	28, 160, 412, 633, 709, 897
PfoI	TCCNGGA	1 cut(s)	718
PkrI	GCNGC	8 cut(s)	53, 209, 239, 286, 298, 420, 666, 913
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	2 cut(s)	556, 717
PluTI	GGCGCC	1 cut(s)	530
PmaCI	CACGTG	1 cut(s)	214
PmlI	CACGTG	1 cut(s)	214
PpsI	GAGTC	2 cut(s)	556, 717
Ppu21I	YACGTR	1 cut(s)	214
PshAI	GACNNNNGTC	2 cut(s)	92, 369
Psp6I	CCWGG	2 cut(s)	522, 718
PspCI	CACGTG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	541
PspGI	CCWGG	2 cut(s)	522, 718
PspN4I	GGNNCC	3 cut(s)	241, 528, 547
PspPI	GGNCC	3 cut(s)	239, 546, 579
PsuI	RGATCY	2 cut(s)	105, 814
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	3 cut(s)	59, 138, 621
RsaNI	GTAC	3 cut(s)	58, 137, 620
SalI	GTCGAC	1 cut(s)	362
SatI	GCNGC	8 cut(s)	52, 208, 238, 285, 297, 419, 665, 912
Sau3AI	GATC	8 cut(s)	105, 202, 277, 447, 459, 643, 814, 883
Sau96I	GGNCC	3 cut(s)	239, 546, 579
SchI	GAGTC	2 cut(s)	556, 717
ScrFI	CCNGG	2 cut(s)	524, 720
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	3 cut(s)	393, 578, 600
SfcI	CTRYAG	1 cut(s)	828
SfoI	GGCGCC	1 cut(s)	528
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	353, 443
SmoI	CTYRAG	2 cut(s)	353, 443
Sse9I	AATT	1 cut(s)	668
SspDI	GGCGCC	1 cut(s)	526
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	2 cut(s)	522, 718
TaaI	ACNGT	7 cut(s)	91, 308, 371, 377, 508, 624, 832
TaiI	ACGT	3 cut(s)	71, 198, 216
TaqI	TCGA	6 cut(s)	201, 228, 270, 363, 560, 866
TasI	AATT	1 cut(s)	668
TatI	WGTACW	2 cut(s)	57, 619
TauI	GCSGC	4 cut(s)	54, 210, 240, 287
TfiI	GAWTC	6 cut(s)	28, 160, 412, 633, 709, 897
TscAI	CASTG	3 cut(s)	374, 380, 719
TseFI	GTSAC	3 cut(s)	371, 508, 607
TseI	GCWGC	4 cut(s)	296, 418, 664, 911
Tsp45I	GTSAC	3 cut(s)	371, 508, 607
TspDTI	ATGAA	3 cut(s)	280, 791, 906
TspRI	CASTG	3 cut(s)	374, 380, 719
VpaK11BI	GGWCC	1 cut(s)	546
XagI	CCTNNNNNAGG	1 cut(s)	931
XmiI	GTMKAC	2 cut(s)	258, 363
XspI	CTAG	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.