Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Reverse (-)

32374327 .. 32376346

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAAGATTACCAGACGAATCCGGAGATTTTGGGTGTGGAATCCGACTGCCAAGTCTACAAAGCCACGCACAAAGCCACCGCCGAGGTTGTCGCGGTTAGAAAGCTGACGGCGGAAGACGGCGTCGTACCTCCCGCTCTTGTCCGCGAGATGCTGGTCGCGCAGAAGTTTACAAAATCTTCTCACGTGGTCAACTTCCGTCACGTCATCCGCGACTTCAAGGACAACAAGCTTGTTTACTACGTTGTCTACGAGCACATAGACACTGATCTCCGCAGCTTCATCGCCGCCAAACCGTTACCCTCCGACGTGGTCAAGAAGCTTCTCTTCCTGCTCCTCCAGGGCGTCCACGAGTGTCACTCTAATGGCGTCCGTCACCGGAACCTGAACCCTAGTGATTTGCTGGTCGACGAGAAACGAGGGAGGCTTAAAATTGGGGCTGGCGTTGGTCAGTCTTTCTCTTTCTTTGGCGAGGCTTCTTCCATGCCCGGCACGACTGTCAGTCTATCTTACCAGTCTCCCGAGGCTTTGCTCGGATCACACGTGTGCAGGGCTGCGGTTGACATGTGGGCTGTTGGTTGCATTTTTGCCGAGATGGTGACCGGGGAGGTTCTGTTTGCCGGAAGTGGCTGTGATCCTAAAAATGCTGTTAAGGAGCAATTGCGTGAGATTTTCAGGCAGTTAGGAAAACCAACAGAGTATGAGTGGCGAGGTGTTACTTCTTTGCCGGGTTGGGACTCCTACGAAGAATGGGAAGGAGAAAAGAAGAAAGCTCGTTTGTTTTTGGCAGGAGATTTGCCAAAAGATTTACTGGTAGGTTCAGTTTCTTTAGACAAAGATGGAGCTGATCTTCTTTCGAAAATGCTTACATATGATCCAGCTCAAAGAATCAGAACTAAAGCAGCAATGAAACACCCCTACTTCGAGCGAATGATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

314

Amino Acids

34.98

Weight (kDa)

6.76

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 308	7.3e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 206	2.7e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	137
AccI	GTMKAC	3 cut(s)	57, 249, 408
AccII	CGCG	4 cut(s)	95, 147, 161, 213
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	9 cut(s)	81, 95, 113, 135, 145, 211, 274, 288, 557
AclWI	GGATC	3 cut(s)	544, 629, 869
AcvI	CACGTG	2 cut(s)	187, 544
AcyI	GRCGYC	3 cut(s)	123, 345, 369
AfaI	GTAC	1 cut(s)	129
AflIII	ACRYGT	3 cut(s)	541, 543, 564
AgsI	TTSAA	1 cut(s)	220
AhdI	GACNNNNNGTC	1 cut(s)	501
AjiI	CACGTC	2 cut(s)	205, 310
AjnI	CCWGG	1 cut(s)	339
AleI	CACNNNNGTG	1 cut(s)	544
AluBI	AGCT	7 cut(s)	106, 232, 279, 322, 773, 845, 881
AluI	AGCT	7 cut(s)	106, 232, 279, 322, 773, 845, 881
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	522
AlwI	GGATC	3 cut(s)	544, 629, 869
Ama87I	CYCGRG	1 cut(s)	521
Aor13HI	TCCGGA	1 cut(s)	22
ApeKI	GCWGC	3 cut(s)	276, 554, 902
AspLEI	GCGC	1 cut(s)	163
AsuC2I	CCSGG	3 cut(s)	489, 604, 729
AsuHPI	GGTGA	2 cut(s)	368, 610
AsuII	TTCGAA	1 cut(s)	857
AvaI	CYCGRG	1 cut(s)	521
BauI	CACGAG	1 cut(s)	350
BbrPI	CACGTG	2 cut(s)	187, 544
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	288, 541, 914
BccI	CCATC	2 cut(s)	589, 833
BceAI	ACGGC	2 cut(s)	126, 136
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	341
BclI	TGATCA	1 cut(s)	933
BcnI	CCSGG	3 cut(s)	489, 604, 729
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	1 cut(s)	393
BisI	GCNGC	4 cut(s)	277, 288, 555, 903
BlsI	GCNGC	4 cut(s)	278, 289, 556, 904
Bme1390I	CCNGG	4 cut(s)	341, 489, 604, 729
BmeRI	GACNNNNNGTC	1 cut(s)	501
BmeT110I	CYCGRG	1 cut(s)	521
BmgBI	CACGTC	2 cut(s)	205, 310
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	4 cut(s)	341, 489, 604, 729
BmsI	GCATC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	857
BpuMI	CCSGG	3 cut(s)	489, 604, 729
BsaAI	YACGTR	2 cut(s)	187, 544
BsaHI	GRCGYC	3 cut(s)	123, 345, 369
BsaJI	CCNNGG	4 cut(s)	84, 340, 522, 603
BsaWI	WCCGGW	2 cut(s)	22, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bse1I	ACTGG	2 cut(s)	514, 816
Bse3DI	GCAATG	1 cut(s)	912
BseAI	TCCGGA	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	4 cut(s)	84, 340, 522, 603
BseGI	GGATG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	912
BseNI	ACTGG	2 cut(s)	514, 816
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	288, 541, 914
BsgI	GTGCAG	1 cut(s)	568
Bsh1236I	CGCG	4 cut(s)	95, 147, 161, 213
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	6 cut(s)	23, 379, 489, 603, 621, 728
BslFI	GGGAC	1 cut(s)	749
BsmAI	GTCTC	1 cut(s)	522
BsmFI	GGGAC	1 cut(s)	749
BsoBI	CYCGRG	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	857
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	6 cut(s)	268, 536, 634, 847, 874, 933
BspACI	CCGC	9 cut(s)	81, 95, 113, 135, 145, 211, 274, 288, 557
BspEI	TCCGGA	1 cut(s)	22
BspFNI	CGCG	4 cut(s)	95, 147, 161, 213
BspLI	GGNNCC	1 cut(s)	383
BspPI	GGATC	3 cut(s)	544, 629, 869
BspT104I	TTCGAA	1 cut(s)	857
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	912
BsrI	ACTGG	2 cut(s)	514, 816
BssECI	CCNNGG	4 cut(s)	84, 340, 522, 603
BssMI	GATC	6 cut(s)	268, 536, 634, 847, 874, 933
BssNI	GRCGYC	3 cut(s)	123, 345, 369
BssSI	CACGAG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	297, 499
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	3 cut(s)	123, 345, 369
BstBAI	YACGTR	2 cut(s)	187, 544
BstBI	TTCGAA	1 cut(s)	857
BstC8I	GCNNGC	1 cut(s)	442
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	4 cut(s)	95, 147, 161, 213
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	6 cut(s)	271, 539, 637, 850, 877, 936
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	6 cut(s)	268, 536, 634, 847, 874, 933
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	568
BstPI	GGTNACC	1 cut(s)	598
BstSCI	CCNGG	4 cut(s)	339, 487, 602, 727
BstUI	CGCG	4 cut(s)	95, 147, 161, 213
BstV1I	GCAGC	3 cut(s)	288, 541, 914
BstV2I	GAAGAC	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	268
BtrI	CACGTC	2 cut(s)	205, 310
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	442
CfoI	GCGC	1 cut(s)	163
CseI	GACGC	3 cut(s)	112, 334, 358
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	2 cut(s)	484, 565
CviQI	GTAC	1 cut(s)	128
DpnI	GATC	6 cut(s)	270, 538, 636, 849, 876, 935
DpnII	GATC	6 cut(s)	268, 536, 634, 847, 874, 933
DrdI	GACNNNNNNGTC	1 cut(s)	53
DriI	GACNNNNNGTC	1 cut(s)	501
DseDI	GACNNNNNNGTC	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	332
Eam1105I	GACNNNNNGTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	128
Eco72I	CACGTG	2 cut(s)	187, 544
Eco88I	CYCGRG	1 cut(s)	521
Eco91I	GGTNACC	1 cut(s)	598
EcoO65I	GGTNACC	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	339
FaeI	CATG	2 cut(s)	487, 568
FaiI	YATR	6 cut(s)	260, 485, 566, 702, 871, 873
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	2 cut(s)	483, 564
FauI	CCCGC	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	871
FbaI	TGATCA	1 cut(s)	933
FblI	GTMKAC	3 cut(s)	57, 249, 408
Fnu4HI	GCNGC	4 cut(s)	277, 288, 555, 903
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	4 cut(s)	277, 288, 555, 903
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	4 cut(s)	277, 288, 555, 903
GsuI	CTGGAG	1 cut(s)	323
HapII	CCGG	6 cut(s)	23, 379, 489, 603, 621, 728
HgaI	GACGC	3 cut(s)	112, 334, 358
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	3 cut(s)	123, 345, 369
Hin1II	CATG	2 cut(s)	487, 568
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	3 cut(s)	193, 409, 562
HindII	GTYRAC	3 cut(s)	193, 409, 562
HindIII	AAGCTT	2 cut(s)	230, 320
HinfI	GANTC	4 cut(s)	19, 41, 737, 888
HpaII	CCGG	6 cut(s)	23, 379, 489, 603, 621, 728
HphI	GGTGA	2 cut(s)	368, 610
Hpy166II	GTNNAC	8 cut(s)	58, 171, 193, 238, 250, 349, 409, 562
Hpy188I	TCNGA	4 cut(s)	46, 307, 536, 893
Hpy188III	TCNNGA	3 cut(s)	23, 316, 521
Hpy8I	GTNNAC	8 cut(s)	58, 171, 193, 238, 250, 349, 409, 562
Hpy99I	CGWCG	3 cut(s)	128, 311, 413
HpyAV	CCTTC	1 cut(s)	749
HpyCH4III	ACNGT	2 cut(s)	297, 499
HpyCH4IV	ACGT	5 cut(s)	186, 204, 243, 309, 543
HpyCH4V	TGCA	2 cut(s)	549, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpySE526I	ACGT	5 cut(s)	186, 204, 243, 309, 543
Hsp92I	GRCGYC	3 cut(s)	123, 345, 369
Hsp92II	CATG	2 cut(s)	487, 568
HspAI	GCGC	1 cut(s)	161
Kpn2I	TCCGGA	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	933
Kzo9I	GATC	6 cut(s)	268, 536, 634, 847, 874, 933
LmnI	GCTCC	3 cut(s)	339, 655, 842
Lsp1109I	GCAGC	3 cut(s)	288, 541, 914
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	5 cut(s)	186, 204, 243, 309, 543
MaeIII	GTNAC	6 cut(s)	200, 297, 356, 374, 598, 715
MalI	GATC	6 cut(s)	270, 538, 636, 849, 876, 935
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	6 cut(s)	268, 536, 634, 847, 874, 933
MboII	GAAGA	8 cut(s)	17, 128, 171, 319, 471, 758, 778, 842
MfeI	CAATTG	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	2 cut(s)	432, 659
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	2 cut(s)	69, 330
MroI	TCCGGA	1 cut(s)	22
MseI	TTAA	2 cut(s)	429, 651
MslI	CAYNNNNRTG	2 cut(s)	363, 544
MspI	CCGG	6 cut(s)	23, 379, 489, 603, 621, 728
MspR9I	CCNGG	4 cut(s)	341, 489, 604, 729
MunI	CAATTG	1 cut(s)	659
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	4 cut(s)	95, 147, 161, 213
MwoI	GCNNNNNNNGC	1 cut(s)	160
NciI	CCSGG	3 cut(s)	489, 604, 729
NdeI	CATATG	1 cut(s)	871
NdeII	GATC	6 cut(s)	268, 536, 634, 847, 874, 933
NlaIII	CATG	2 cut(s)	487, 568
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	2 cut(s)	109, 616
NmuCI	GTSAC	4 cut(s)	200, 356, 374, 598
NspI	RCATGY	1 cut(s)	568
NspV	TTCGAA	1 cut(s)	857
OliI	CACNNNNGTG	1 cut(s)	544
PciI	ACATGT	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	3 cut(s)	210, 249, 540
PfeI	GAWTC	3 cut(s)	19, 41, 888
PflFI	GACNNNGTC	2 cut(s)	122, 311
PkrI	GCNGC	4 cut(s)	278, 289, 556, 904
PleI	GAGTC	1 cut(s)	731
PmaCI	CACGTG	2 cut(s)	187, 544
PmlI	CACGTG	2 cut(s)	187, 544
PpsI	GAGTC	1 cut(s)	731
Ppu21I	YACGTR	2 cut(s)	187, 544
PscI	ACATGT	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	339
PspCI	CACGTG	2 cut(s)	187, 544
PspEI	GGTNACC	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	383
PsyI	GACNNNGTC	2 cut(s)	122, 311
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	2 cut(s)	363, 544
SalI	GTCGAC	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	429, 651
SatI	GCNGC	4 cut(s)	277, 288, 555, 903
Sau3AI	GATC	6 cut(s)	268, 536, 634, 847, 874, 933
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	4 cut(s)	341, 489, 604, 729
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	857
SmiMI	CAYNNNNRTG	2 cut(s)	363, 544
Sse9I	AATT	2 cut(s)	432, 659
SsiI	CCGC	9 cut(s)	81, 95, 113, 135, 145, 211, 274, 288, 557
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	4 cut(s)	339, 487, 602, 727
TaaI	ACNGT	2 cut(s)	297, 499
TaiI	ACGT	5 cut(s)	189, 207, 246, 312, 546
TaqI	TCGA	3 cut(s)	408, 857, 924
TasI	AATT	2 cut(s)	432, 659
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	3 cut(s)	19, 41, 888
Tru1I	TTAA	2 cut(s)	429, 651
Tru9I	TTAA	2 cut(s)	429, 651
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	4 cut(s)	200, 356, 374, 598
TseI	GCWGC	3 cut(s)	276, 554, 902
Tsp45I	GTSAC	4 cut(s)	200, 356, 374, 598
TspDTI	ATGAA	2 cut(s)	271, 923
TspGWI	ACGGA	2 cut(s)	188, 362
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	2 cut(s)	122, 311
XceI	RCATGY	1 cut(s)	568
XmiI	GTMKAC	3 cut(s)	57, 249, 408
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.