FvH4_2g27020

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
21569490 .. 21576472
6983 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27020.t3

Sequence Viewer

Length: 1920 bp
ATGCCGTTCTCTGTCTCCGGCGGTTCGTCATCATATAAGAATTTCAAACAAATAACCCGCCACCGATTATTGTATGAGATGCTTGCGTCTTGCAAAAGGAAGGACTCAACAAAATGGAAGGTACTTATCATGGATAAACTTACTACTAAGATAATGTCTTCCGCATGCACACTCAGTGATACAACAGAAGAGGGTGTTTCATTGCTTGAAGACTTAGAAAAGAAAAGGCAGTCATGGCCCAACATGGATGCAATATACTTTATCCGGCCTTCTAAAGAGAATGTTAACTTATTCTTGTCAGACATGTCCGGAAAAGCGCCATTATACAGGAAGGCATTTATTTTCTTTAGTTCACCTATATCTAAAGATTTGGTTGGTCGCATCATGGAGGATTTAAATGTATTAAGTCGCATATCTGCATTGAGAGAGATGAATTTGGAATTTTTAGCTATAGACAGCCAGGGTTTTGTTACCAACAATGAGAAGGCTTTAGAGCAGCTTTATAAGGACAAGGAGGATTCGTGCAAAGGTGTATTGTGTTTGAATGAGATAGCTGTGCGTGTTGCCACAGTCTTGGCTTCTCTAAGGGAATTTCCTGTTGTGCGCTACCGAGCTGCCAAGTTTCTTGATGCCACCACGACGACTACTTTTCCTGATTTAATTCCTACAAAGCTTGCTGCTGGGATCTGGGATTCTCTCATGAAATATAAAGATACAATTCCAGATTTCCCTGAGACAGAATCATGCGAGTTGCTTATCCTTGACAGATCTGTGGATCAGATTGCACCGGTCATACATGAATGGACATACGATGCCATGTGTCATGATTTGTTAAATATGGAAGGAAATAGATATGTGCTTGAAGTTCCAAGCAAAACTGGTGGTCTGGCTGACAAGAAAGTTGTTCTTCTAGAGCATGATCCTGTTTGGCTTGAGCTTCGCCATGAACACATAGCAGAGGTTACTGAACGGTTGAAGAAACTTGCCCATTTTGTTTCAAATAATAAGGCTGCAGAAATGGAGAATTCAAGAGATCAGGACTCTCATGATCAATCTACAATGCAATTGAAAAAGATAACTCAAGCATTACCACAGTATATCAAACAAAAGGAGAGGCTTTCCCTTCATTCGGAGATTGCAGGGAAAATCTACTCAATTATCAGGAACCTCGGGCTTCAAGAGCTTGCGCAACTGGAGCAGGATCTTGTTTTTGGATATGCAGGAATGGAAGATGTCATCAAATATCTGAGGACAAAAGATGATACAACTGGCGAAAATAAGTTGCGTCTGTTGATGATTCTTGCTGCCATTTATCCTGAGCAATTTGAGGGTGAGGAGGTTCATAAGAATTTGATCAAGTTGGCAAAGTTACCACCATGTGATATGGCTGCCGTGAATAATATCAAACTGCTTGGTGGATCATCAGAGAATAGAAACAGCTCATCAGGAATATTTTTTCCGAAGTTTGATATTACTAAGAAGAATCGTGCATCAAGGAAAGAGCGTCCAAGTGAAGAACCATGGCAGTTTTCGAGATTTTATCCTATTCTAGAGGAATTGATAGAAAAACTTAGCAAAGGTGAACTGTCAAAGGAAGAGTATCCATGTCTAAATGACCCAAAGCCAACTTTAAATCAACTCCCTCAGGCACATTCTATGAGATCAAGACGGACACCGACATGGGCGCAGCGTGGGATTTCTGGAGATGGGATTTCAAGGCATGCATCCAGTGATTTCAAAAAGATGGGCAAACGCATATTTGTATTTATAGTAGGTGGAGCTACTAGATCAGAGCTCAGGGTTTGCCACAAGCTCACAGTAAAGCTGAACAGGGAAGTTGTTCTAGGCTCCACATCTCTTGATGATCCTTCAACTTTTATTACGAAACTAAAAATGATCACAGCAGACGATCAGCTCTAA

Protein Analysis

640

Amino Acids

72.72

Weight (kDa)

8.33

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 40 - 627 8.7e-122 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
Acc16I TGCGCA 1 cut(s) 1188
AccIII TCCGGA 1 cut(s) 308
AciI CCGC 3 cut(s) 21, 58, 162
AclWI GGATC 6 cut(s) 692, 783, 914, 1209, 1426, 1859
AcsI RAATTY 6 cut(s) 40, 433, 440, 590, 1024, 1348
AdeI CACNNNGTG 2 cut(s) 176, 1379
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 1129
AflIII ACRYGT 1 cut(s) 303
AgeI ACCGGT 1 cut(s) 787
AjnI CCWGG 1 cut(s) 459
Alw21I GWGCWC 1 cut(s) 1797
Alw26I GTCTC 2 cut(s) 19, 728
AlwI GGATC 6 cut(s) 692, 783, 914, 1209, 1426, 1859
Ama87I CYCGRG 1 cut(s) 1169
Aor13HI TCCGGA 1 cut(s) 308
AoxI GGCC 2 cut(s) 236, 266
ApeKI GCWGC 7 cut(s) 496, 614, 677, 1010, 1304, 1388, 1687
ApoI RAATTY 6 cut(s) 40, 433, 440, 590, 1024, 1348
AsiGI ACCGGT 1 cut(s) 787
Asp700I GAANNNNTTC 1 cut(s) 1839
AspLEI GCGC 4 cut(s) 319, 606, 1189, 1687
AspS9I GGNCC 1 cut(s) 237
AsuHPI GGTGA 3 cut(s) 345, 1343, 1592
AvaI CYCGRG 1 cut(s) 1169
AxyI CCTNAGG 1 cut(s) 1644
BanII GRGCYC 1 cut(s) 1797
BbsI GAAGAC 2 cut(s) 150, 216
Bbv12I GWGCWC 1 cut(s) 1797
BbvI GCAGC 7 cut(s) 508, 601, 664, 997, 1291, 1375, 1699
BccI CCATC 2 cut(s) 1700, 1738
BceAI ACGGC 1 cut(s) 1376
BciT130I CCWGG 1 cut(s) 461
BciVI GTATCC 1 cut(s) 1611
BclI TGATCA 3 cut(s) 1048, 1353, 1896
BcoDI GTCTC 2 cut(s) 19, 728
BfaI CTAG 4 cut(s) 911, 1550, 1785, 1844
BfmI CTRYAG 2 cut(s) 450, 1011
BfoI RGCGCY 1 cut(s) 320
BfuI GTATCC 1 cut(s) 1611
BglII AGATCT 1 cut(s) 767
BisI GCNGC 7 cut(s) 497, 615, 678, 1011, 1305, 1389, 1688
BlsI GCNGC 7 cut(s) 498, 616, 679, 1012, 1306, 1390, 1689
Bme1390I CCNGG 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 1169
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 1166, 1849
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 7 cut(s) 69, 238, 390, 619, 802, 1499, 1733
BpiI GAAGAC 2 cut(s) 150, 216
BpmI CTGGAG 2 cut(s) 1214, 1722
Bpu10I CCTNAGC 2 cut(s) 1317, 1796
BpuEI CTTGAG 2 cut(s) 953, 1065
BsaJI CCNNGG 3 cut(s) 460, 1168, 1520
BsaWI WCCGGW 2 cut(s) 308, 787
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 1 cut(s) 1129
Bse118I RCCGGY 1 cut(s) 787
Bse1I ACTGG 4 cut(s) 883, 1197, 1273, 1728
Bse21I CCTNAGG 1 cut(s) 1644
Bse3DI GCAATG 1 cut(s) 200
BseAI TCCGGA 1 cut(s) 308
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 3 cut(s) 460, 1168, 1520
BseGI GGATG 2 cut(s) 253, 1724
BseLI CCNNNNNNNGG 1 cut(s) 1129
BseMI GCAATG 1 cut(s) 200
BseMII CTCAG 6 cut(s) 187, 723, 1238, 1308, 1658, 1810
BseNI ACTGG 4 cut(s) 883, 1197, 1273, 1728
BseRI GAGGAG 1 cut(s) 1349
BseXI GCAGC 7 cut(s) 508, 601, 664, 997, 1291, 1375, 1699
BseYI CCCAGC 1 cut(s) 680
BshFI GGCC 2 cut(s) 238, 268
BshTI ACCGGT 1 cut(s) 787
BsiHKAI GWGCWC 1 cut(s) 1797
BsiHKCI CYCGRG 1 cut(s) 1169
BsiSI CCGG 4 cut(s) 18, 265, 309, 788
BslI CCNNNNNNNGG 1 cut(s) 1129
BsmAI GTCTC 2 cut(s) 19, 728
BsnI GGCC 2 cut(s) 238, 268
BsoBI CYCGRG 1 cut(s) 1169
Bsp1286I GDGCHC 1 cut(s) 1797
Bsp13I TCCGGA 1 cut(s) 308
Bsp19I CCATGG 1 cut(s) 1520
BspACI CCGC 3 cut(s) 21, 58, 162
BspANI GGCC 2 cut(s) 238, 268
BspCNI CTCAG 6 cut(s) 186, 724, 1239, 1309, 1657, 1809
BspEI TCCGGA 1 cut(s) 308
BspHI TCATGA 3 cut(s) 699, 823, 1045
BspLI GGNNCC 2 cut(s) 1166, 1849
BspMAI CTGCAG 1 cut(s) 1015
BspPI GGATC 6 cut(s) 692, 783, 914, 1209, 1426, 1859
BsrDI GCAATG 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 787
BsrI ACTGG 4 cut(s) 883, 1197, 1273, 1728
BssAI RCCGGY 1 cut(s) 787
BssECI CCNNGG 3 cut(s) 460, 1168, 1520
BssT1I CCWWGG 1 cut(s) 1520
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 5 cut(s) 571, 972, 1095, 1587, 1819
Bst6I CTCTTC 2 cut(s) 183, 1590
BstC8I GCNNGC 5 cut(s) 84, 166, 675, 1185, 1722
BstDSI CCRYGG 1 cut(s) 1520
BstF5I GGATG 2 cut(s) 253, 1724
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 4 cut(s) 319, 606, 1189, 1687
BstMAI GTCTC 2 cut(s) 19, 728
BstMWI GCNNNNNNNGC 3 cut(s) 235, 1180, 1195
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 3 cut(s) 168, 307, 1724
BstSCI CCNGG 1 cut(s) 459
BstSFI CTRYAG 2 cut(s) 450, 1011
BstV1I GCAGC 7 cut(s) 508, 601, 664, 997, 1291, 1375, 1699
BstV2I GAAGAC 2 cut(s) 150, 216
BstX2I RGATCY 3 cut(s) 684, 767, 1201
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 3 cut(s) 684, 767, 1201
Bsu36I CCTNAGG 1 cut(s) 1644
BsuI GTATCC 1 cut(s) 1611
BsuRI GGCC 2 cut(s) 238, 268
BtgI CCRYGG 1 cut(s) 1520
BtsCI GGATG 2 cut(s) 253, 1724
BtsIMutI CAGTG 2 cut(s) 181, 1735
Cac8I GCNNGC 5 cut(s) 84, 166, 675, 1185, 1722
CciI TCATGA 3 cut(s) 699, 823, 1045
CfoI GCGC 4 cut(s) 319, 606, 1189, 1687
Cfr10I RCCGGY 1 cut(s) 787
Cfr13I GGNCC 1 cut(s) 237
CseI GACGC 3 cut(s) 75, 1274, 1493
Csp6I GTAC 1 cut(s) 122
CspAI ACCGGT 1 cut(s) 787
CspCI CAANNNNNGTGG 4 cut(s) 862, 897, 1840, 1875
CviQI GTAC 1 cut(s) 122
DraI TTTAAA 2 cut(s) 396, 1632
DraIII CACNNNGTG 2 cut(s) 176, 1379
Eam1104I CTCTTC 2 cut(s) 183, 1590
EarI CTCTTC 2 cut(s) 183, 1590
Ecl136II GAGCTC 1 cut(s) 1795
Eco130I CCWWGG 1 cut(s) 1520
Eco24I GRGCYC 1 cut(s) 1797
Eco53kI GAGCTC 1 cut(s) 1795
Eco81I CCTNAGG 1 cut(s) 1644
Eco88I CYCGRG 1 cut(s) 1169
EcoICRI GAGCTC 1 cut(s) 1795
EcoRI GAATTC 1 cut(s) 1024
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 1520
EcoT22I ATGCAT 1 cut(s) 1726
EcoT38I GRGCYC 1 cut(s) 1797
ErhI CCWWGG 1 cut(s) 1520
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FauI CCCGC 1 cut(s) 65
FbaI TGATCA 3 cut(s) 1048, 1353, 1896
Fnu4HI GCNGC 7 cut(s) 497, 615, 678, 1011, 1305, 1389, 1688
FokI GGATG 2 cut(s) 260, 1711
FriOI GRGCYC 1 cut(s) 1797
Fsp4HI GCNGC 7 cut(s) 497, 615, 678, 1011, 1305, 1389, 1688
FspBI CTAG 4 cut(s) 911, 1550, 1785, 1844
FspI TGCGCA 1 cut(s) 1188
GlaI GCGC 4 cut(s) 318, 605, 1188, 1686
GluI GCNGC 7 cut(s) 497, 615, 678, 1011, 1305, 1389, 1688
GsaI CCCAGC 1 cut(s) 684
GsuI CTGGAG 2 cut(s) 1214, 1722
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 2 cut(s) 238, 268
HapII CCGG 4 cut(s) 18, 265, 309, 788
HgaI GACGC 3 cut(s) 75, 1274, 1493
HhaI GCGC 4 cut(s) 319, 606, 1189, 1687
Hin6I GCGC 4 cut(s) 317, 604, 1187, 1685
HinP1I GCGC 4 cut(s) 317, 604, 1187, 1685
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 7 cut(s) 104, 518, 692, 740, 1040, 1297, 1483
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 4 cut(s) 18, 265, 309, 788
HphI GGTGA 3 cut(s) 345, 1343, 1592
Hpy166II GTNNAC 3 cut(s) 286, 353, 1583
Hpy188I TCNGA 7 cut(s) 301, 780, 1132, 1248, 1426, 1461, 1792
Hpy8I GTNNAC 3 cut(s) 286, 353, 1583
Hpy99I CGWCG 1 cut(s) 643
HpyAV CCTTC 8 cut(s) 94, 112, 279, 325, 478, 836, 1133, 1878
HpyCH4III ACNGT 5 cut(s) 571, 972, 1095, 1587, 1819
HpyF10VI GCNNNNNNNGC 3 cut(s) 235, 1180, 1195
HspAI GCGC 4 cut(s) 317, 604, 1187, 1685
Kpn2I TCCGGA 1 cut(s) 308
Ksp22I TGATCA 3 cut(s) 1048, 1353, 1896
KspAI GTTAAC 1 cut(s) 286
LmnI GCTCC 3 cut(s) 1195, 1778, 1853
Lsp1109I GCAGC 7 cut(s) 508, 601, 664, 997, 1291, 1375, 1699
LweI GCATC 7 cut(s) 69, 238, 390, 619, 802, 1499, 1733
MaeI CTAG 4 cut(s) 911, 1550, 1785, 1844
MaeIII GTNAC 3 cut(s) 469, 961, 1368
MboII GAAGA 9 cut(s) 150, 200, 221, 899, 988, 1241, 1492, 1526, 1607
MfeI CAATTG 1 cut(s) 1064
MflI RGATCY 3 cut(s) 684, 767, 1201
MhlI GDGCHC 1 cut(s) 1797
MlyI GAGTC 2 cut(s) 98, 1034
Mph1103I ATGCAT 1 cut(s) 1726
MroI TCCGGA 1 cut(s) 308
MroXI GAANNNNTTC 1 cut(s) 1839
MseI TTAA 6 cut(s) 285, 395, 404, 659, 833, 1631
MslI CAYNNNNRTG 1 cut(s) 1678
MspI CCGG 4 cut(s) 18, 265, 309, 788
MspR9I CCNGG 1 cut(s) 461
MunI CAATTG 1 cut(s) 1064
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 3 cut(s) 235, 1180, 1195
NcoI CCATGG 1 cut(s) 1520
NlaIV GGNNCC 2 cut(s) 1166, 1849
NsbI TGCGCA 1 cut(s) 1188
NsiI ATGCAT 1 cut(s) 1726
NspI RCATGY 3 cut(s) 168, 307, 1724
PaeI GCATGC 2 cut(s) 168, 1724
PagI TCATGA 3 cut(s) 699, 823, 1045
PciI ACATGT 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 1839
PfeI GAWTC 5 cut(s) 518, 692, 740, 1297, 1483
PinAI ACCGGT 1 cut(s) 787
PkrI GCNGC 7 cut(s) 498, 616, 679, 1012, 1306, 1390, 1689
PleI GAGTC 2 cut(s) 98, 1034
PpsI GAGTC 2 cut(s) 98, 1034
PscI ACATGT 1 cut(s) 303
PsiI TTATAA 1 cut(s) 504
Psp124BI GAGCTC 1 cut(s) 1797
Psp6I CCWGG 1 cut(s) 459
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 1166, 1849
PspPI GGNCC 1 cut(s) 237
PstI CTGCAG 1 cut(s) 1015
PsuI RGATCY 3 cut(s) 684, 767, 1201
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 1678
SacI GAGCTC 1 cut(s) 1797
SaqAI TTAA 6 cut(s) 285, 395, 404, 659, 833, 1631
SatI GCNGC 7 cut(s) 497, 615, 678, 1011, 1305, 1389, 1688
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 2 cut(s) 98, 1034
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 1 cut(s) 1797
SfaNI GCATC 7 cut(s) 69, 238, 390, 619, 802, 1499, 1733
SfcI CTRYAG 2 cut(s) 450, 1011
SmiI ATTTAAAT 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 1678
SmlI CTYRAG 2 cut(s) 932, 1080
SmoI CTYRAG 2 cut(s) 932, 1080
SphI GCATGC 2 cut(s) 168, 1724
SsiI CCGC 3 cut(s) 21, 58, 162
SspI AATATT 1 cut(s) 1452
SspMI CTAG 4 cut(s) 911, 1550, 1785, 1844
SstI GAGCTC 1 cut(s) 1797
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 1520
SwaI ATTTAAAT 1 cut(s) 396
TaaI ACNGT 5 cut(s) 571, 972, 1095, 1587, 1819
TaqI TCGA 1 cut(s) 1532
TfiI GAWTC 5 cut(s) 518, 692, 740, 1297, 1483
Tru1I TTAA 6 cut(s) 285, 395, 404, 659, 833, 1631
Tru9I TTAA 6 cut(s) 285, 395, 404, 659, 833, 1631
TscAI CASTG 2 cut(s) 181, 1735
TseI GCWGC 7 cut(s) 496, 614, 677, 1010, 1304, 1388, 1687
TspDTI ATGAA 7 cut(s) 189, 446, 716, 813, 960, 1115, 1331
TspGWI ACGGA 1 cut(s) 1684
TspRI CASTG 2 cut(s) 181, 1735
XapI RAATTY 6 cut(s) 40, 433, 440, 590, 1024, 1348
XbaI TCTAGA 2 cut(s) 910, 1549
XceI RCATGY 3 cut(s) 168, 307, 1724
XmnI GAANNNNTTC 1 cut(s) 1839
XspI CTAG 4 cut(s) 911, 1550, 1785, 1844
Zsp2I ATGCAT 1 cut(s) 1726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.