Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001124

Physical Location & Seq

Genomic Coordinates Reverse (-)

56864230 .. 56869104

Gene Structure 4875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG382600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGGGACAAGGAGGATTCATGCAAAGGAATTTCCTATTGTGCGCTACCGAGCTGCTAAGTTGCTTGATGCCACCACGATTACCACTTTTCCTGATTTAATTCCTACAAAGCTTGCTGCTGGGATCTGGGATTGTCTCATAAAATATAAAAATACAATTCCAAATTTCCCTGTGACAGAATCATGCGAGTTGCTTATCCTTGACAGATCTGTGGATCAGATTGCACCGGTCATACATGAATGGACATATGATGCCATGTGTCATGACTTGTTAAATATGGAAGGAAATAGATATCTGCTTGAGGTTCCAAGCAAAACTGGTGGTCTGGCTGACAAGAAAGGTGTTCTTCTAGAGGAGCATGATCCTGTCTGGCTTGAGTTTCGCCATGAACACATAGCAGAGGTTAGTGAACGGTTGAATGAGAAACTGACCAATTTTCTTTCAAATAATAAGGCAGCACAATTGCAGAATTCAAGTGATTGGGGATCTCATGAACGATCTACGAGGGAACTCAAGAAGATAACTCAAGCATTACCACAGTATGGCAAACAAAAGGACAGGCTTTCCCTTCATTCAGAGATTGCAAAGAAAATCCACTCAATTAGCAGGGAGCTTGGGCTTCGAGAGCTTGCGCAGCTGGAGCAAGCTCTTGTTTTTGGATATGCGGGAATGAAAGATGTGATCAAATTTCTGAGGACAAAAGATGATACAACTGGCGAAAATAAGTTACGTTTGTTGATGATTCTTGCTGCCATTTATCCTGAGAAATTTGAGGGTGAGGAGGGTCAAGAGAATTTGATGAAGTTGGCAAAATTATCACCATGTGATATGGCTGCTGTGAATAATATCAAACTGATTGGGGGATCATCAGAGAACAGAAACAGCTCATCAGGAATTTTTTTTCGGAACTTTAATCTTACCAAGAAGAATTGTGCGTCTAGGAAAGAACGTCCAAGTGAAGAAAAATGGCAGTTTTCGAGCTTTTATCCCATTATAGAGGAACTAATAGAAAAGCTTAGCAAAGGTGAACTGTCCAAGGAAGACTATCCATGTCTAAATGACCCAACCCCAACTTTACATCAATCCCCCCAGGCTCATTCAATAAGATCAAGACGGACACCGACATGGGCCCAGCGTGGGATTTCTGGAGATGGGATTTCAAGGCATGCATCCAATGATTTCAAAAAGATGGGCAAACGCATATTTGTAGTTATAGTAGGCGGAGCAACTAGATCAGAGCTTAGAGTTTGCCATAAGCTAACAGCGAAGCTGAAAAGGGAAGTTGTTCTAGGCTCCACATCTCTTGATGATCCTGTAACTTTTATTACGAAAGTAAAGATGATCACAGCAGACGATCAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0016020 GO:0019898 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 map04721

Pfam Domains

Protein Families

Sec1

Protein Analysis

454

Amino Acids

51.46

Weight (kDa)

8.93

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	9 - 443	8.7e-78	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12360 AT4G12120
fragaria_vesca	FvH4_2g27020 FvH4_2g27020 FvH4_2g27020 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992
malus_domestica	MD04G1079000.v1.1 MD06G1073800.v1.1
prunus_persica	Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1
pyrus_communis	pycom04g07080 pycom06g05270
rosa_chinensis	RchiOBHm_Chr5g0038751 RchiOBHm_Chr6g0295901 RchiOBHm_Chr7g0201411
rosa_laevigata	RLG00000003677 RLG00000011758 RLG00000033865
rosa_multiflora	Rmu_sc0001469.1_g000008 Rmu_sc0005722.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042410 Rroxscaffold_3G00255300 Rroxscaffold_7G00172070
rosa_rugosa	Rorug05G0173300.1 Rorug05G0173400 Rorug05G0173500 Rorug06G0255000 Rorug06G0255000 Rorug07G0063400 Rorug07G0063500
rosa_samantha	Rh5AG260700 Rh5BG264400 Rh5CG297100 Rh5DG272800 Rh6AG368700 Rh6BG376400 Rh6CG382600 Rh6DG369200 Rh7AG190300 Rh7BG192700 Rh7CG201800 Rh7DG195300
rosa_wichuraiana	Rw5G024070 Rw5G024360 Rw6G032150 Rw7G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	633
AccB7I	CCANNNNNTGG	1 cut(s)	542
AciI	CCGC	2 cut(s)	665, 1221
AclWI	GGATC	6 cut(s)	131, 222, 356, 493, 871, 1304
AcsI	RAATTY	7 cut(s)	29, 163, 469, 686, 767, 793, 894
AdeI	CACNNNGTG	1 cut(s)	824
AfiI	CCNNNNNNNGG	2 cut(s)	542, 1137
AgeI	ACCGGT	1 cut(s)	226
AgsI	TTSAA	6 cut(s)	418, 444, 474, 1101, 1161, 1183
AjnI	CCWGG	1 cut(s)	1089
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	6 cut(s)	131, 222, 356, 493, 871, 1304
AoxI	GGCC	1 cut(s)	1128
ApaI	GGGCCC	1 cut(s)	1132
ApeKI	GCWGC	6 cut(s)	53, 116, 455, 634, 749, 833
ApoI	RAATTY	7 cut(s)	29, 163, 469, 686, 767, 793, 894
AsiGI	ACCGGT	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	1284
AspLEI	GCGC	2 cut(s)	45, 634
AspS9I	GGNCC	2 cut(s)	1128, 1129
AsuHPI	GGTGA	3 cut(s)	788, 810, 1037
BaeGI	GKGCMC	1 cut(s)	1132
BanII	GRGCYC	1 cut(s)	1132
BbsI	GAAGAC	1 cut(s)	1047
BbvI	GCAGC	6 cut(s)	40, 103, 467, 646, 736, 820
BccI	CCATC	2 cut(s)	1145, 1183
BciT130I	CCWGG	1 cut(s)	1091
BclI	TGATCA	2 cut(s)	681, 1341
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	4 cut(s)	350, 939, 1230, 1289
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	6 cut(s)	54, 117, 456, 635, 750, 834
BlpI	GCTNAGC	1 cut(s)	1016
BlsI	GCNGC	6 cut(s)	55, 118, 457, 636, 751, 835
Bme1390I	CCNGG	1 cut(s)	1091
BmgT120I	GGNCC	2 cut(s)	1128, 1129
BmiI	GGNNCC	3 cut(s)	306, 1130, 1294
BmrFI	CCNGG	1 cut(s)	1091
BmsI	GCATC	3 cut(s)	58, 241, 1178
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	2 cut(s)	659, 1167
Bpu1102I	GCTNAGC	1 cut(s)	1016
BpuEI	CTTGAG	4 cut(s)	320, 395, 497, 510
BsaJI	CCNNGG	2 cut(s)	1035, 1089
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 1137
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	322, 718
BseBI	CCWGG	1 cut(s)	1091
BseDI	CCNNGG	2 cut(s)	1035, 1089
BseGI	GGATG	1 cut(s)	1169
BseLI	CCNNNNNNNGG	2 cut(s)	542, 1137
BseMII	CTCAG	2 cut(s)	683, 753
BseNI	ACTGG	2 cut(s)	322, 718
BseRI	GAGGAG	2 cut(s)	368, 794
BseSI	GKGCMC	1 cut(s)	1132
BseXI	GCAGC	6 cut(s)	40, 103, 467, 646, 736, 820
BseYI	CCCAGC	2 cut(s)	119, 1131
BshFI	GGCC	1 cut(s)	1130
BshTI	ACCGGT	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	542, 1137
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	1130
Bsp120I	GGGCCC	1 cut(s)	1128
Bsp1286I	GDGCHC	1 cut(s)	1132
Bsp1720I	GCTNAGC	1 cut(s)	1016
BspACI	CCGC	2 cut(s)	665, 1221
BspANI	GGCC	1 cut(s)	1130
BspCNI	CTCAG	2 cut(s)	684, 754
BspHI	TCATGA	2 cut(s)	262, 490
BspLI	GGNNCC	3 cut(s)	306, 1130, 1294
BspPI	GGATC	6 cut(s)	131, 222, 356, 493, 871, 1304
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	322, 718
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	1035, 1089
BssT1I	CCWWGG	1 cut(s)	1035
Bst2UI	CCWGG	1 cut(s)	1091
Bst4CI	ACNGT	3 cut(s)	414, 540, 1032
BstC8I	GCNNGC	4 cut(s)	114, 630, 645, 1167
BstDEI	CTNAG	5 cut(s)	57, 692, 762, 1016, 1241
BstF5I	GGATG	1 cut(s)	1169
BstHHI	GCGC	2 cut(s)	45, 634
BstMAI	GTCTC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	3 cut(s)	625, 634, 640
BstNI	CCWGG	1 cut(s)	1091
BstNSI	RCATGY	1 cut(s)	1169
BstSCI	CCNGG	1 cut(s)	1089
BstSLI	GKGCMC	1 cut(s)	1132
BstV1I	GCAGC	6 cut(s)	40, 103, 467, 646, 736, 820
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	3 cut(s)	123, 206, 485
BstYI	RGATCY	3 cut(s)	123, 206, 485
BsuRI	GGCC	1 cut(s)	1130
BtsCI	GGATG	1 cut(s)	1169
Cac8I	GCNNGC	4 cut(s)	114, 630, 645, 1167
CciI	TCATGA	2 cut(s)	262, 490
CfoI	GCGC	2 cut(s)	45, 634
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	1128, 1129
CseI	GACGC	1 cut(s)	924
CspAI	ACCGGT	1 cut(s)	226
CspCI	CAANNNNNGTGG	4 cut(s)	301, 336, 1285, 1320
DdeI	CTNAG	5 cut(s)	57, 692, 762, 1016, 1241
DraIII	CACNNNGTG	1 cut(s)	824
EciI	GGCGGA	1 cut(s)	1236
Eco130I	CCWWGG	1 cut(s)	1035
Eco24I	GRGCYC	1 cut(s)	1132
Eco32I	GATATC	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	1089
EcoRV	GATATC	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	1035
EcoT22I	ATGCAT	1 cut(s)	1171
EcoT38I	GRGCYC	1 cut(s)	1132
ErhI	CCWWGG	1 cut(s)	1035
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FaqI	GGGAC	1 cut(s)	19
FauI	CCCGC	1 cut(s)	658
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	2 cut(s)	681, 1341
Fnu4HI	GCNGC	6 cut(s)	54, 117, 456, 635, 750, 834
FokI	GGATG	1 cut(s)	1156
FriOI	GRGCYC	1 cut(s)	1132
Fsp4HI	GCNGC	6 cut(s)	54, 117, 456, 635, 750, 834
FspBI	CTAG	4 cut(s)	350, 939, 1230, 1289
FspI	TGCGCA	1 cut(s)	633
GlaI	GCGC	2 cut(s)	44, 633
GluI	GCNGC	6 cut(s)	54, 117, 456, 635, 750, 834
GsaI	CCCAGC	2 cut(s)	123, 1135
GsuI	CTGGAG	2 cut(s)	659, 1167
HaeIII	GGCC	1 cut(s)	1130
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	924
HhaI	GCGC	2 cut(s)	45, 634
Hin6I	GCGC	2 cut(s)	43, 632
HinP1I	GCGC	2 cut(s)	43, 632
HindIII	AAGCTT	2 cut(s)	110, 1013
HinfI	GANTC	3 cut(s)	16, 179, 742
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	3 cut(s)	788, 810, 1037
Hpy166II	GTNNAC	2 cut(s)	410, 1028
Hpy188I	TCNGA	6 cut(s)	219, 577, 693, 871, 906, 1237
Hpy8I	GTNNAC	2 cut(s)	410, 1028
HpyAV	CCTTC	2 cut(s)	275, 578
HpyCH4III	ACNGT	3 cut(s)	414, 540, 1032
HpyCH4IV	ACGT	2 cut(s)	730, 949
HpyCH4V	TGCA	5 cut(s)	23, 224, 466, 584, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	625, 634, 640
HpyF3I	CTNAG	5 cut(s)	57, 692, 762, 1016, 1241
HpySE526I	ACGT	2 cut(s)	730, 949
HspAI	GCGC	2 cut(s)	43, 632
Ksp22I	TGATCA	2 cut(s)	681, 1341
LmnI	GCTCC	5 cut(s)	355, 610, 640, 1223, 1298
Lsp1109I	GCAGC	6 cut(s)	40, 103, 467, 646, 736, 820
LweI	GCATC	3 cut(s)	58, 241, 1178
MaeI	CTAG	4 cut(s)	350, 939, 1230, 1289
MaeII	ACGT	2 cut(s)	730, 949
MaeIII	GTNAC	3 cut(s)	172, 726, 1315
MboII	GAAGA	5 cut(s)	338, 529, 937, 971, 1052
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	3 cut(s)	123, 206, 485
MhlI	GDGCHC	1 cut(s)	1132
Mph1103I	ATGCAT	1 cut(s)	1171
MroXI	GAANNNNTTC	1 cut(s)	1284
MseI	TTAA	3 cut(s)	98, 272, 912
MslI	CAYNNNNRTG	1 cut(s)	1123
MspA1I	CMGCKG	1 cut(s)	637
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	1091
MunI	CAATTG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	1091
MwoI	GCNNNNNNNGC	3 cut(s)	625, 634, 640
NdeI	CATATG	1 cut(s)	247
NlaIV	GGNNCC	3 cut(s)	306, 1130, 1294
NmuCI	GTSAC	1 cut(s)	172
NsbI	TGCGCA	1 cut(s)	633
NsiI	ATGCAT	1 cut(s)	1171
NspI	RCATGY	1 cut(s)	1169
PaeI	GCATGC	1 cut(s)	1169
PagI	TCATGA	2 cut(s)	262, 490
PdmI	GAANNNNTTC	1 cut(s)	1284
PfeI	GAWTC	3 cut(s)	16, 179, 742
PflMI	CCANNNNNTGG	1 cut(s)	542
PinAI	ACCGGT	1 cut(s)	226
PkrI	GCNGC	6 cut(s)	55, 118, 457, 636, 751, 835
Psp6I	CCWGG	1 cut(s)	1089
PspFI	CCCAGC	2 cut(s)	119, 1131
PspGI	CCWGG	1 cut(s)	1089
PspN4I	GGNNCC	3 cut(s)	306, 1130, 1294
PspOMI	GGGCCC	1 cut(s)	1128
PspPI	GGNCC	2 cut(s)	1128, 1129
PsuI	RGATCY	3 cut(s)	123, 206, 485
PvuII	CAGCTG	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	1123
SaqAI	TTAA	3 cut(s)	98, 272, 912
SatI	GCNGC	6 cut(s)	54, 117, 456, 635, 750, 834
Sau96I	GGNCC	2 cut(s)	1128, 1129
ScrFI	CCNGG	1 cut(s)	1091
SduI	GDGCHC	1 cut(s)	1132
SfaNI	GCATC	3 cut(s)	58, 241, 1178
SmiMI	CAYNNNNRTG	1 cut(s)	1123
SmlI	CTYRAG	4 cut(s)	299, 374, 512, 525
SmoI	CTYRAG	4 cut(s)	299, 374, 512, 525
SphI	GCATGC	1 cut(s)	1169
SsiI	CCGC	2 cut(s)	665, 1221
SspMI	CTAG	4 cut(s)	350, 939, 1230, 1289
StyD4I	CCNGG	1 cut(s)	1089
StyI	CCWWGG	1 cut(s)	1035
TaaI	ACNGT	3 cut(s)	414, 540, 1032
TaiI	ACGT	2 cut(s)	733, 952
TaqI	TCGA	2 cut(s)	622, 977
TfiI	GAWTC	3 cut(s)	16, 179, 742
Tru1I	TTAA	3 cut(s)	98, 272, 912
Tru9I	TTAA	3 cut(s)	98, 272, 912
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	6 cut(s)	53, 116, 455, 634, 749, 833
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	7 cut(s)	8, 252, 402, 507, 560, 686, 815
TspGWI	ACGGA	1 cut(s)	1129
Van91I	CCANNNNNTGG	1 cut(s)	542
XapI	RAATTY	7 cut(s)	29, 163, 469, 686, 767, 793, 894
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	1 cut(s)	1169
XmnI	GAANNNNTTC	1 cut(s)	1284
XspI	CTAG	4 cut(s)	350, 939, 1230, 1289
Zsp2I	ATGCAT	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.