Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001124

Physical Location & Seq

Genomic Coordinates Reverse (-)

33096439 .. 33103158

Gene Structure 6720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG264400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGTCGTTATCCGGCTCCGGTTCCGGTTTGTCATCAACTTCGAACAACTACAGGAATTTTAAAGAAGTCACGCGCCACCGATTATTGCATGAAATGCTTCGGTCTTGCAAAACCGGGAACTCAAAATCAACATGGAAGGTACTCATTATGGACGAATTTACTATCAAGATAATGTCTTACGCATGCACACTCCTTGATACTACAAATGAAGGAGTTTTATTGCTAGAGCGCATAGATAAGGAAAGGCAGCGATTTGCCTCCATGGATGCAATATATTTCATCCGGCCTTCTAAAGAGAATGTTAGATTCTTCTTGTCAGACATGTCGGGAAGTGCACCTTTATATAGGAAGGCGTTTGTTTTTTTCACTTCACCTATATCGAAAGATTTGGTTGGGCAGATAAAGGGGGATGGAAGTCTAACAAGTCGCATATCTGCATTGAGTGAGATGAATTTGGAGTATTATGCTATAGACAGCCAGGGTTTTGTTACCAATAATGAGAGAGCTTTAGCGCAGCTTTATGGGGACAAGGACGATTCACGCGAAGCCGAAGCGTGTTTGAGTGAGATGGCTGCACGTGTAGCCACAGTCTTTGCTTCTTTAAGGGAATTTCCTATTGTTCGCTACCGAGCTGCCAATAGGATTGATGCCACCATGGAGACCACTTTTCGTGATTTAATTCCTACAAAGCTTGCTGCTGGTGTCTGGGATTGTCTCATGCATTACAAAAGAACAATTCCAAATTTCCCTCAGATAGAAACATGCGAGTTACTTATCCTTGACAGATCTGTGGATCAGATTGCTCCAATCATCCACGAGTGGACATACGATGCCTTGTGTCATGACTTGTTAGATATGGAAGGAAATAAATATGTGCATGAGGTTGCGAGCATAAACGGTGGTCCTCCTGACCAGAAAGATGTTCTTCTAGAGGAGCATGATCCTGTCTGGCTTGAACTTCGCGATCATCATTTAGGATTTGCCTTGGAATGGTTGAATTCAAAACTTTCCAATCTTAAGCAGAACAAGGCTGCACTATTCGAAAATTCAAGAGATGGGCAATGTCCTGAGCTATCTTCAAGGGAATTGAAAGAGATAACTGAAGCATTGCCACAGTATGTTGAACTAAAAGAAAAGCTCTCCCTTCATATAGAGATTGCATCGAAACTAAACAGAATTGTCAGGAACCTTGAGCTCCCATTCCTTTCGGAGCTGGAGCAGGGTCTTGTTTTTGGAGATGCAGGAATAAAAGAGGTGATCATGTTTCTGAGAATACATGGGGTAAGGAATCTTGGAACTACTAAATTTGAGCGCACCAGACACCTCTTTCTATTTTGTATAACACCATTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0016020 GO:0019898 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 map04721

Pfam Domains

Protein Families

Sec1

Protein Analysis

451

Amino Acids

51.47

Weight (kDa)

5.91

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	46 - 447	1.6e-81	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12360 AT4G12120
fragaria_vesca	FvH4_2g27020 FvH4_2g27020 FvH4_2g27020 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992
malus_domestica	MD04G1079000.v1.1 MD06G1073800.v1.1
prunus_persica	Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1
pyrus_communis	pycom04g07080 pycom06g05270
rosa_chinensis	RchiOBHm_Chr5g0038751 RchiOBHm_Chr6g0295901 RchiOBHm_Chr7g0201411
rosa_laevigata	RLG00000003677 RLG00000011758 RLG00000033865
rosa_multiflora	Rmu_sc0001469.1_g000008 Rmu_sc0005722.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042410 Rroxscaffold_3G00255300 Rroxscaffold_7G00172070
rosa_rugosa	Rorug05G0173300.1 Rorug05G0173400 Rorug05G0173500 Rorug06G0255000 Rorug06G0255000 Rorug07G0063400 Rorug07G0063500
rosa_samantha	Rh5AG260700 Rh5BG264400 Rh5CG297100 Rh5DG272800 Rh6AG368700 Rh6BG376400 Rh6CG382600 Rh6DG369200 Rh7AG190300 Rh7BG192700 Rh7CG201800 Rh7DG195300
rosa_wichuraiana	Rw5G024070 Rw5G024360 Rw6G032150 Rw7G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	73, 543, 963
AclWI	GGATC	2 cut(s)	801, 935
AcsI	RAATTY	8 cut(s)	55, 155, 451, 608, 742, 997, 1045, 1304
AcuI	CTGAAG	1 cut(s)	1122
AcvI	CACGTG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	990
AflII	CTTAAG	1 cut(s)	1016
AflIII	ACRYGT	2 cut(s)	321, 577
AgsI	TTSAA	7 cut(s)	956, 997, 1002, 1050, 1080, 1090, 1124
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	8 cut(s)	506, 517, 632, 691, 1072, 1138, 1195, 1213
AluI	AGCT	8 cut(s)	506, 517, 632, 691, 1072, 1138, 1195, 1213
Alw21I	GWGCWC	2 cut(s)	337, 1197
Alw26I	GTCTC	2 cut(s)	653, 719
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	2 cut(s)	801, 935
AoxI	GGCC	1 cut(s)	284
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	6 cut(s)	247, 514, 572, 632, 695, 1031
ApoI	RAATTY	8 cut(s)	55, 155, 451, 608, 742, 997, 1045, 1304
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	4 cut(s)	75, 231, 514, 1314
AspS9I	GGNCC	1 cut(s)	902
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	363, 1267
AsuII	TTCGAA	2 cut(s)	41, 1041
AvaII	GGWCC	1 cut(s)	902
BaeGI	GKGCMC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	1197
BauI	CACGAG	1 cut(s)	815
BbrPI	CACGTG	1 cut(s)	578
Bbv12I	GWGCWC	2 cut(s)	337, 1197
BbvI	GCAGC	6 cut(s)	259, 526, 559, 619, 682, 1018
BccI	CCATC	3 cut(s)	404, 562, 1049
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	1 cut(s)	1257
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	653, 719
BfaI	CTAG	2 cut(s)	224, 929
BfmI	CTRYAG	2 cut(s)	49, 468
BfrI	CTTAAG	1 cut(s)	1016
BglII	AGATCT	1 cut(s)	785
BisI	GCNGC	6 cut(s)	248, 515, 573, 633, 696, 1032
BlsI	GCNGC	6 cut(s)	249, 516, 574, 634, 697, 1033
Bme1390I	CCNGG	2 cut(s)	115, 479
Bme18I	GGWCC	1 cut(s)	902
BmgT120I	GGNCC	1 cut(s)	902
BmiI	GGNNCC	3 cut(s)	16, 22, 1187
BmrFI	CCNGG	2 cut(s)	115, 479
BmsI	GCATC	5 cut(s)	256, 637, 820, 1169, 1228
BpmI	CTGGAG	1 cut(s)	1235
Bpu10I	CCTNAGC	1 cut(s)	1068
Bpu14I	TTCGAA	2 cut(s)	41, 1041
BpuEI	CTTGAG	1 cut(s)	1211
BpuMI	CCSGG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	578
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	4 cut(s)	261, 478, 654, 984
BsaWI	WCCGGW	2 cut(s)	17, 23
Bsc4I	CCNNNNNNNGG	1 cut(s)	990
Bse3DI	GCAATG	2 cut(s)	1067, 1106
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	4 cut(s)	261, 478, 654, 984
BseGI	GGATG	4 cut(s)	271, 279, 415, 810
BseLI	CCNNNNNNNGG	1 cut(s)	990
BseMI	GCAATG	2 cut(s)	1067, 1106
BseMII	CTCAG	3 cut(s)	764, 1059, 1259
BseRI	GAGGAG	1 cut(s)	947
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	6 cut(s)	259, 526, 559, 619, 682, 1018
BsgI	GTGCAG	2 cut(s)	558, 1017
Bsh1236I	CGCG	3 cut(s)	73, 543, 963
BshFI	GGCC	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	337, 1197
BsiSI	CCGG	5 cut(s)	12, 18, 24, 114, 283
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	1 cut(s)	990
BsmAI	GTCTC	2 cut(s)	653, 719
BsmFI	GGGAC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	286
Bso31I	GGTCTC	1 cut(s)	653
Bsp119I	TTCGAA	2 cut(s)	41, 1041
Bsp1286I	GDGCHC	2 cut(s)	337, 1197
Bsp143I	GATC	5 cut(s)	785, 793, 940, 964, 1257
Bsp19I	CCATGG	2 cut(s)	261, 654
Bsp68I	TCGCGA	1 cut(s)	963
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	3 cut(s)	763, 1060, 1260
BspFNI	CGCG	3 cut(s)	73, 543, 963
BspHI	TCATGA	1 cut(s)	841
BspLI	GGNNCC	3 cut(s)	16, 22, 1187
BspPI	GGATC	2 cut(s)	801, 935
BspT104I	TTCGAA	2 cut(s)	41, 1041
BspTI	CTTAAG	1 cut(s)	1016
BspTNI	GGTCTC	1 cut(s)	653
BsrDI	GCAATG	2 cut(s)	1067, 1106
BssECI	CCNNGG	4 cut(s)	261, 478, 654, 984
BssMI	GATC	5 cut(s)	785, 793, 940, 964, 1257
BssSI	CACGAG	1 cut(s)	815
BssT1I	CCWWGG	3 cut(s)	261, 654, 984
Bst2BI	CACGAG	1 cut(s)	815
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	589, 899, 1116
BstAFI	CTTAAG	1 cut(s)	1016
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	578
BstBI	TTCGAA	2 cut(s)	41, 1041
BstC8I	GCNNGC	3 cut(s)	184, 693, 889
BstDEI	CTNAG	3 cut(s)	750, 1068, 1268
BstDSI	CCRYGG	2 cut(s)	261, 654
BstF5I	GGATG	4 cut(s)	271, 279, 415, 810
BstFNI	CGCG	3 cut(s)	73, 543, 963
BstHHI	GCGC	4 cut(s)	75, 231, 514, 1314
BstKTI	GATC	5 cut(s)	788, 796, 943, 967, 1260
BstMAI	GTCTC	2 cut(s)	653, 719
BstMBI	GATC	5 cut(s)	785, 793, 940, 964, 1257
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 581
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	3 cut(s)	186, 325, 765
BstSCI	CCNGG	2 cut(s)	113, 477
BstSFI	CTRYAG	2 cut(s)	49, 468
BstSLI	GKGCMC	1 cut(s)	337
BstUI	CGCG	3 cut(s)	73, 543, 963
BstV1I	GCAGC	6 cut(s)	259, 526, 559, 619, 682, 1018
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
BsuRI	GGCC	1 cut(s)	286
BtgI	CCRYGG	2 cut(s)	261, 654
BtsCI	GGATG	4 cut(s)	271, 279, 415, 810
BtuMI	TCGCGA	1 cut(s)	963
Cac8I	GCNNGC	3 cut(s)	184, 693, 889
CciI	TCATGA	1 cut(s)	841
CfoI	GCGC	4 cut(s)	75, 231, 514, 1314
Cfr13I	GGNCC	1 cut(s)	902
Csp6I	GTAC	1 cut(s)	140
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	3 cut(s)	750, 1068, 1268
DpnI	GATC	5 cut(s)	787, 795, 942, 966, 1259
DpnII	GATC	5 cut(s)	785, 793, 940, 964, 1257
DraI	TTTAAA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	1195
Eco130I	CCWWGG	3 cut(s)	261, 654, 984
Eco24I	GRGCYC	1 cut(s)	1197
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	902
Eco53kI	GAGCTC	1 cut(s)	1195
Eco57I	CTGAAG	1 cut(s)	1122
Eco72I	CACGTG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	1195
EcoRI	GAATTC	1 cut(s)	997
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	3 cut(s)	261, 654, 984
EcoT22I	ATGCAT	1 cut(s)	723
EcoT38I	GRGCYC	1 cut(s)	1197
ErhI	CCWWGG	3 cut(s)	261, 654, 984
FalI	AAGNNNNNCTT	4 cut(s)	322, 354, 909, 941
FaqI	GGGAC	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	1257
Fnu4HI	GCNGC	6 cut(s)	248, 515, 573, 633, 696, 1032
FokI	GGATG	4 cut(s)	266, 278, 422, 797
FriOI	GRGCYC	1 cut(s)	1197
Fsp4HI	GCNGC	6 cut(s)	248, 515, 573, 633, 696, 1032
FspBI	CTAG	2 cut(s)	224, 929
GlaI	GCGC	4 cut(s)	74, 230, 513, 1313
GluI	GCNGC	6 cut(s)	248, 515, 573, 633, 696, 1032
GsuI	CTGGAG	1 cut(s)	1235
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	5 cut(s)	12, 18, 24, 114, 283
HhaI	GCGC	4 cut(s)	75, 231, 514, 1314
Hin6I	GCGC	4 cut(s)	73, 229, 512, 1312
HinP1I	GCGC	4 cut(s)	73, 229, 512, 1312
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	3 cut(s)	306, 536, 1288
HpaII	CCGG	5 cut(s)	12, 18, 24, 114, 283
HphI	GGTGA	2 cut(s)	363, 1267
Hpy166II	GTNNAC	2 cut(s)	335, 822
Hpy188I	TCNGA	5 cut(s)	319, 753, 798, 1210, 1269
Hpy8I	GTNNAC	2 cut(s)	335, 822
HpyAV	CCTTC	6 cut(s)	130, 203, 297, 343, 854, 1154
HpyCH4III	ACNGT	3 cut(s)	589, 899, 1116
HpyCH4IV	ACGT	1 cut(s)	577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 581
HpyF3I	CTNAG	3 cut(s)	750, 1068, 1268
HpySE526I	ACGT	1 cut(s)	577
HspAI	GCGC	4 cut(s)	73, 229, 512, 1312
Ksp22I	TGATCA	1 cut(s)	1257
Kzo9I	GATC	5 cut(s)	785, 793, 940, 964, 1257
LmnI	GCTCC	6 cut(s)	20, 808, 934, 1200, 1210, 1216
Lsp1109I	GCAGC	6 cut(s)	259, 526, 559, 619, 682, 1018
LweI	GCATC	5 cut(s)	256, 637, 820, 1169, 1228
MaeI	CTAG	2 cut(s)	224, 929
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	3 cut(s)	67, 487, 768
MalI	GATC	5 cut(s)	787, 795, 942, 966, 1259
MboI	GATC	5 cut(s)	785, 793, 940, 964, 1257
MboII	GAAGA	3 cut(s)	301, 917, 1068
MflI	RGATCY	1 cut(s)	785
MhlI	GDGCHC	2 cut(s)	337, 1197
MnlI	CCTC	7 cut(s)	268, 759, 874, 915, 925, 1246, 1334
Mph1103I	ATGCAT	1 cut(s)	723
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	4 cut(s)	60, 602, 677, 1017
MspCI	CTTAAG	1 cut(s)	1016
MspI	CCGG	5 cut(s)	12, 18, 24, 114, 283
MspR9I	CCNGG	2 cut(s)	115, 479
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	3 cut(s)	73, 543, 963
MwoI	GCNNNNNNNGC	2 cut(s)	94, 581
NciI	CCSGG	1 cut(s)	115
NcoI	CCATGG	2 cut(s)	261, 654
NdeII	GATC	5 cut(s)	785, 793, 940, 964, 1257
NlaIV	GGNNCC	3 cut(s)	16, 22, 1187
NmuCI	GTSAC	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	963
NsiI	ATGCAT	1 cut(s)	723
NspI	RCATGY	3 cut(s)	186, 325, 765
NspV	TTCGAA	2 cut(s)	41, 1041
PaeI	GCATGC	1 cut(s)	186
PagI	TCATGA	1 cut(s)	841
PciI	ACATGT	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	306, 536, 1288
PkrI	GCNGC	6 cut(s)	249, 516, 574, 634, 697, 1033
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
Ppu21I	YACGTR	1 cut(s)	578
PscI	ACATGT	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	1197
Psp6I	CCWGG	1 cut(s)	477
PspCI	CACGTG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	16, 22, 1187
PspPI	GGNCC	1 cut(s)	902
PsuI	RGATCY	1 cut(s)	785
RruI	TCGCGA	1 cut(s)	963
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	1197
SaqAI	TTAA	4 cut(s)	60, 602, 677, 1017
SatI	GCNGC	6 cut(s)	248, 515, 573, 633, 696, 1032
Sau3AI	GATC	5 cut(s)	785, 793, 940, 964, 1257
Sau96I	GGNCC	1 cut(s)	902
ScrFI	CCNGG	2 cut(s)	115, 479
SduI	GDGCHC	2 cut(s)	337, 1197
SfaNI	GCATC	5 cut(s)	256, 637, 820, 1169, 1228
SfcI	CTRYAG	2 cut(s)	49, 468
SfuI	TTCGAA	2 cut(s)	41, 1041
SinI	GGWCC	1 cut(s)	902
SmlI	CTYRAG	2 cut(s)	1016, 1190
SmoI	CTYRAG	2 cut(s)	1016, 1190
SphI	GCATGC	1 cut(s)	186
SspMI	CTAG	2 cut(s)	224, 929
SstI	GAGCTC	1 cut(s)	1197
StyD4I	CCNGG	2 cut(s)	113, 477
StyI	CCWWGG	3 cut(s)	261, 654, 984
TaaI	ACNGT	3 cut(s)	589, 899, 1116
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	4 cut(s)	41, 380, 1041, 1163
TaqII	GACCGA	1 cut(s)	90
TfiI	GAWTC	3 cut(s)	306, 536, 1288
Tru1I	TTAA	4 cut(s)	60, 602, 677, 1017
Tru9I	TTAA	4 cut(s)	60, 602, 677, 1017
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	6 cut(s)	247, 514, 572, 632, 695, 1031
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	5 cut(s)	105, 222, 268, 464, 1136
Vha464I	CTTAAG	1 cut(s)	1016
VneI	GTGCAC	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	902
XapI	RAATTY	8 cut(s)	55, 155, 451, 608, 742, 997, 1045, 1304
XbaI	TCTAGA	1 cut(s)	928
XceI	RCATGY	3 cut(s)	186, 325, 765
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	2 cut(s)	224, 929
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.