Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001124

Physical Location & Seq

Genomic Coordinates Reverse (-)

34220996 .. 34224654

Gene Structure 3659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAATTTGGAGTATTATGCTATAGACAGCCAGGGTTTTGTTACCAATAATGAGAGAGCTTTAGCGCAGCTTTATGGGGACAAGGACGATTCACGCGAAGCCGAAGCGTGTTTGAGTGAGATGGCTGCACGTGTAGCCACAGTCTTTGCTTCTTTAAGGGAATTTCCTATTGTTCGCTACCGAGCTGCCAATAGGATTGATGCCACCATGGAGACCACTTTTCGTGATTTAATTCCTACAAAGCTTGCTGCTGGTGTCTGGGATTGTCTCATGCATTACAAAAGAACAATTCCAAATTTCCCTCAGATAGAAACATGCGAGTTACTTATCCTTGACAGATCTGTGGATCAGGTTGCGAGCATAAACGGTGGTCCTCCTGACCAGAAAGATGTTCTTCTAGAGGAGCATGATCCTGTCTGGCTTGAACTTCGCGATCATCATTTAGGATTTGCCTTGGAATGGTTGAATTCAGAACTTTCCAATCTTAAGCAGAACAAGGCTGCACTATTCGAAAATTCAAGAGATGGGCAATGTCCTGAGCTATCTTCAAGGGAATTGAAAGAGATAACTGAAGCATTGCCACAGTATGTTGAACTAAAAGAAAAGCTCTCCCTTCATATAGAGATTGCATCGAAACTAAACAGAATTGTCAGGAACCTTGAGCTCCCATTCCTTTCGGAGCTGGAGCAGGGTCTTGTTTTTGGAGATGCAGGAATAAAAGAGGTGATCATGTTTCTGAGAATACATGGGCTTAGGGTTTGTCGGAAACTCACAGCAAAGCTCAAAAGGGAAGTTATTCTGGGCTCCTCATCTCTTGACGATCCTGCAACTTTTGTTACGGTATACTATTATCAAAAGCACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0016020 GO:0019898 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 map04721

Pfam Domains

Protein Families

Sec1

Protein Analysis

288

Amino Acids

32.88

Weight (kDa)

5.3

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	1 - 119	2.4e-13	Sec1 family
Sec1	PF00995	126 - 236	2.2e-19	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12360 AT4G12120
fragaria_vesca	FvH4_2g27020 FvH4_2g27020 FvH4_2g27020 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992
malus_domestica	MD04G1079000.v1.1 MD06G1073800.v1.1
prunus_persica	Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1
pyrus_communis	pycom04g07080 pycom06g05270
rosa_chinensis	RchiOBHm_Chr5g0038751 RchiOBHm_Chr6g0295901 RchiOBHm_Chr7g0201411
rosa_laevigata	RLG00000003677 RLG00000011758 RLG00000033865
rosa_multiflora	Rmu_sc0001469.1_g000008 Rmu_sc0005722.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042410 Rroxscaffold_3G00255300 Rroxscaffold_7G00172070
rosa_rugosa	Rorug05G0173300.1 Rorug05G0173400 Rorug05G0173500 Rorug06G0255000 Rorug06G0255000 Rorug07G0063400 Rorug07G0063500
rosa_samantha	Rh5AG260700 Rh5BG264400 Rh5CG297100 Rh5DG272800 Rh6AG368700 Rh6BG376400 Rh6CG382600 Rh6DG369200 Rh7AG190300 Rh7BG192700 Rh7CG201800 Rh7DG195300
rosa_wichuraiana	Rw5G024070 Rw5G024360 Rw6G032150 Rw7G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	843
AccII	CGCG	2 cut(s)	96, 432
AclWI	GGATC	3 cut(s)	354, 404, 815
AcsI	RAATTY	5 cut(s)	4, 161, 295, 466, 514
AcuI	CTGAAG	1 cut(s)	591
AcvI	CACGTG	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflII	CTTAAG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	6 cut(s)	425, 466, 519, 549, 559, 593
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	9 cut(s)	59, 70, 185, 244, 541, 607, 664, 682, 781
AluI	AGCT	9 cut(s)	59, 70, 185, 244, 541, 607, 664, 682, 781
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	2 cut(s)	206, 272
AlwI	GGATC	3 cut(s)	354, 404, 815
ApeKI	GCWGC	5 cut(s)	67, 125, 185, 248, 500
ApoI	RAATTY	5 cut(s)	4, 161, 295, 466, 514
Asp700I	GAANNNNTTC	1 cut(s)	795
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	736
AsuII	TTCGAA	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	371
BanII	GRGCYC	2 cut(s)	666, 806
BbrPI	CACGTG	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	5 cut(s)	79, 112, 172, 235, 487
BccI	CCATC	2 cut(s)	115, 518
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	726
BcoDI	GTCTC	2 cut(s)	206, 272
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	485
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	5 cut(s)	68, 126, 186, 249, 501
BlsI	GCNGC	5 cut(s)	69, 127, 187, 250, 502
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	656, 805
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	3 cut(s)	190, 638, 697
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	2 cut(s)	537, 752
Bpu14I	TTCGAA	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	680
BsaAI	YACGTR	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	31, 207, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse3DI	GCAATG	2 cut(s)	536, 575
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	31, 207, 453
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	2 cut(s)	536, 575
BseMII	CTCAG	3 cut(s)	317, 528, 728
BseRI	GAGGAG	2 cut(s)	416, 796
BseXI	GCAGC	5 cut(s)	79, 112, 172, 235, 487
BsgI	GTGCAG	2 cut(s)	111, 486
Bsh1236I	CGCG	2 cut(s)	96, 432
BsiHKAI	GWGCWC	1 cut(s)	666
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	2 cut(s)	206, 272
BsmFI	GGGAC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	510
Bsp1286I	GDGCHC	2 cut(s)	666, 806
Bsp143I	GATC	6 cut(s)	338, 346, 409, 433, 726, 820
Bsp19I	CCATGG	1 cut(s)	207
Bsp68I	TCGCGA	1 cut(s)	432
BspCNI	CTCAG	3 cut(s)	316, 529, 729
BspFNI	CGCG	2 cut(s)	96, 432
BspLI	GGNNCC	2 cut(s)	656, 805
BspPI	GGATC	3 cut(s)	354, 404, 815
BspT104I	TTCGAA	1 cut(s)	510
BspTI	CTTAAG	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	536, 575
BssECI	CCNNGG	3 cut(s)	31, 207, 453
BssMI	GATC	6 cut(s)	338, 346, 409, 433, 726, 820
BssNAI	GTATAC	1 cut(s)	844
BssT1I	CCWWGG	2 cut(s)	207, 453
Bst1107I	GTATAC	1 cut(s)	844
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	4 cut(s)	142, 368, 585, 841
BstAFI	CTTAAG	1 cut(s)	485
BstBAI	YACGTR	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	510
BstC8I	GCNNGC	2 cut(s)	246, 358
BstDEI	CTNAG	4 cut(s)	303, 537, 737, 752
BstDSI	CCRYGG	1 cut(s)	207
BstFNI	CGCG	2 cut(s)	96, 432
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	6 cut(s)	341, 349, 412, 436, 729, 823
BstMAI	GTCTC	2 cut(s)	206, 272
BstMBI	GATC	6 cut(s)	338, 346, 409, 433, 726, 820
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	21
BstUI	CGCG	2 cut(s)	96, 432
BstV1I	GCAGC	5 cut(s)	79, 112, 172, 235, 487
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BstZ17I	GTATAC	1 cut(s)	844
BtgI	CCRYGG	1 cut(s)	207
BtuMI	TCGCGA	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	246, 358
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	371
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	6 cut(s)	208, 271, 315, 407, 730, 746
DdeI	CTNAG	4 cut(s)	303, 537, 737, 752
DpnI	GATC	6 cut(s)	340, 348, 411, 435, 728, 822
DpnII	GATC	6 cut(s)	338, 346, 409, 433, 726, 820
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	2 cut(s)	207, 453
Eco24I	GRGCYC	2 cut(s)	666, 806
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	1 cut(s)	591
Eco72I	CACGTG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	664
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	207, 453
EcoT22I	ATGCAT	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	666, 806
ErhI	CCWWGG	2 cut(s)	207, 453
FaeI	CATG	6 cut(s)	211, 274, 318, 410, 733, 749
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	6 cut(s)	207, 270, 314, 406, 729, 745
FbaI	TGATCA	1 cut(s)	726
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	5 cut(s)	68, 126, 186, 249, 501
FriOI	GRGCYC	2 cut(s)	666, 806
Fsp4HI	GCNGC	5 cut(s)	68, 126, 186, 249, 501
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	5 cut(s)	68, 126, 186, 249, 501
GsuI	CTGGAG	1 cut(s)	704
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	6 cut(s)	211, 274, 318, 410, 733, 749
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	736
Hpy166II	GTNNAC	1 cut(s)	844
Hpy188I	TCNGA	5 cut(s)	306, 472, 679, 738, 765
Hpy188III	TCNNGA	8 cut(s)	224, 377, 398, 431, 519, 536, 652, 815
Hpy8I	GTNNAC	1 cut(s)	844
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	4 cut(s)	142, 368, 585, 841
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	6 cut(s)	128, 274, 503, 629, 710, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	4 cut(s)	303, 537, 737, 752
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	6 cut(s)	211, 274, 318, 410, 733, 749
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	6 cut(s)	338, 346, 409, 433, 726, 820
LmnI	GCTCC	5 cut(s)	403, 669, 679, 685, 809
Lsp1109I	GCAGC	5 cut(s)	79, 112, 172, 235, 487
LweI	GCATC	3 cut(s)	190, 638, 697
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	3 cut(s)	40, 321, 835
MalI	GATC	6 cut(s)	340, 348, 411, 435, 728, 822
MboI	GATC	6 cut(s)	338, 346, 409, 433, 726, 820
MboII	GAAGA	2 cut(s)	386, 537
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	2 cut(s)	666, 806
MmeI	TCCRAC	1 cut(s)	743
MnlI	CCTC	5 cut(s)	312, 384, 394, 715, 817
Mph1103I	ATGCAT	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	4 cut(s)	155, 230, 486, 865
MspCI	CTTAAG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	2 cut(s)	96, 432
MwoI	GCNNNNNNNGC	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	6 cut(s)	338, 346, 409, 433, 726, 820
NlaIII	CATG	6 cut(s)	211, 274, 318, 410, 733, 749
NlaIV	GGNNCC	2 cut(s)	656, 805
NruI	TCGCGA	1 cut(s)	432
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	1 cut(s)	318
NspV	TTCGAA	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	5 cut(s)	69, 127, 187, 250, 502
PmaCI	CACGTG	1 cut(s)	131
PmlI	CACGTG	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	30
PspCI	CACGTG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	656, 805
PspPI	GGNCC	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	338
RruI	TCGCGA	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	4 cut(s)	155, 230, 486, 865
SatI	GCNGC	5 cut(s)	68, 126, 186, 249, 501
Sau3AI	GATC	6 cut(s)	338, 346, 409, 433, 726, 820
Sau96I	GGNCC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	666, 806
SfaNI	GCATC	3 cut(s)	190, 638, 697
SfcI	CTRYAG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	510
SinI	GGWCC	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	485, 659
SmoI	CTYRAG	2 cut(s)	485, 659
SspMI	CTAG	1 cut(s)	398
SstI	GAGCTC	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	207, 453
TaaI	ACNGT	4 cut(s)	142, 368, 585, 841
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	510, 632
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	4 cut(s)	155, 230, 486, 865
Tru9I	TTAA	4 cut(s)	155, 230, 486, 865
TseI	GCWGC	5 cut(s)	67, 125, 185, 248, 500
TspDTI	ATGAA	2 cut(s)	17, 605
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	5 cut(s)	4, 161, 295, 466, 514
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	843
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.