Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001124

Physical Location & Seq

Genomic Coordinates Forward (+)

12365156 .. 12373197

Gene Structure 8042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGCCGTTCTCCAGCTCCGGCGGTTCATCATCATATAAGAATTTCAGACAAATAACGCGCGAGCGTGAGTTCTCTCTTCATGATTATTGCATGAGATGCTTGGATCTTGCAAAAGGGGGACTCAACGCAATGGAAGGTAATACAAAATCTGTGCTTGAACGCATAGAAAAGAAAAGGCAGCCAATGCCCCACATGGACGCAATATACTTTATCCGGCCTTCCAAAGAGAATTCACCTATTTCTAAAGATTTGGTTGGTCGCATCAAGGAGGATGGAAGTGTATTAAGTCGCATATCTGCATTGAGTGAGGGTTTTGTTACCAACAATGAGAGGGCTTTAGAGCAGCTTTATGGGGACAAGGAGGATTCATGCAAAGGTATAGTGTGTTTGAATGAGATAGCTGCGCGTATTGCCACAGTCTTTGCTTCTTTAAAGGAATTTCCTATTGTGCGCTATCGAGCTGCAAAGTTGCTTGATGCCACCACGATGACCACTTTTCCTGATTTAATTCCTACAAAGCTTGCTGCTGGGATCTGGGATTGTCTCATAAAATATAAAAATACAATTCCAAATTTCCCTGTGACAGAATCATGCGAGTTGCTTATCCTTGACAGATCTGTGGATCAGGTTCCAAGCAAAACTGGTGGTCTGGCTGGCAAGAAAGAAGTTCTTCTAGAGGAGCATGATCCTGTCTGGCTTGAGTTTCGCCATGAACACATAGCAGAGGTTAGTGAACGGTTGAATGAGAAACTTACCAATTTTCTTTCAAATAATAAGGCTGCACAGTTGCAGAATTCAAGTGATTGGGGATCTCATGAACGATCTACAAGGGAACTCAAGAAGATAACTCAAGCATTACCACAGTATGGCAAACAAAAGGACAGGCTTTCCCTTCATTCAGAGATTGCAAAGAAAATCCACTCAATTAGCAGGGAGCTTGGGCTTCGAGAGCTTGCGCAGCTGGAGCAAGCTCTTGTTTTTGGATATGCAGGAATGAAAGATGTGATCAAATTTCTGAGGACAAAAGATGATACAATTGGCGAAAATAAGTTACGTTTGTTGATGATTCTTGCTGCCATTTATCCTGAGAAATTTGAGGGTGAGGACGGTCAAGAGAATTTGATGAAGGTTGGTATCATGCAAGGTGAGTCAGCATATGAACTAATAGAAAAGCTTAGCAAAGGTGAACTGTCCAAGGAAGACTATCCATGTCTAAATGACCCAACCCCAACTTTACATCAATCCCCCCAGGCTCATTCAATAAGATCAAGACGGACACCGACATGGGCCCAGCGTGGGATTTCTGGAGATGGGATTTCAAGGTATATTAGCTTACTCAATCTTCTGCTTAGAGTTTGCCATAAGCTCACAGCGAAGCTGAAAAGGGAAGTTGTTCTAGGCTCCACATCTCTTGATGATCCTGCAACTTTTATTACGGTAAAAGCTCATACTTTTCTATCCTCAACAAGCAGATATCTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0016020 GO:0019898 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 map04721

Pfam Domains

Protein Families

Sec1

Protein Analysis

494

Amino Acids

55.65

Weight (kDa)

8.69

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	54 - 210	6.2e-14	Sec1 family
Sec1	PF00995	218 - 394	3e-28	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12360 AT4G12120
fragaria_vesca	FvH4_2g27020 FvH4_2g27020 FvH4_2g27020 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992
malus_domestica	MD04G1079000.v1.1 MD06G1073800.v1.1
prunus_persica	Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1
pyrus_communis	pycom04g07080 pycom06g05270
rosa_chinensis	RchiOBHm_Chr5g0038751 RchiOBHm_Chr6g0295901 RchiOBHm_Chr7g0201411
rosa_laevigata	RLG00000003677 RLG00000011758 RLG00000033865
rosa_multiflora	Rmu_sc0001469.1_g000008 Rmu_sc0005722.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042410 Rroxscaffold_3G00255300 Rroxscaffold_7G00172070
rosa_rugosa	Rorug05G0173300.1 Rorug05G0173400 Rorug05G0173500 Rorug06G0255000 Rorug06G0255000 Rorug07G0063400 Rorug07G0063500
rosa_samantha	Rh5AG260700 Rh5BG264400 Rh5CG297100 Rh5DG272800 Rh6AG368700 Rh6BG376400 Rh6CG382600 Rh6DG369200 Rh7AG190300 Rh7BG192700 Rh7CG201800 Rh7DG195300
rosa_wichuraiana	Rw5G024070 Rw5G024360 Rw6G032150 Rw7G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	957
AccB7I	CCANNNNNTGG	1 cut(s)	866
AccII	CGCG	3 cut(s)	58, 60, 406
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	6 cut(s)	111, 539, 630, 680, 817, 1412
AcsI	RAATTY	8 cut(s)	40, 229, 437, 571, 793, 1010, 1091, 1117
AfiI	CCNNNNNNNGG	2 cut(s)	866, 1296
AgsI	TTSAA	7 cut(s)	158, 391, 742, 768, 798, 1260, 1320
AjnI	CCWGG	1 cut(s)	1248
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	6 cut(s)	111, 539, 630, 680, 817, 1412
AoxI	GGCC	2 cut(s)	215, 1287
ApaI	GGGCCC	1 cut(s)	1291
ApeKI	GCWGC	8 cut(s)	178, 343, 401, 461, 524, 779, 958, 1073
ApoI	RAATTY	8 cut(s)	40, 229, 437, 571, 793, 1010, 1091, 1117
Asp700I	GAANNNNTTC	2 cut(s)	669, 1392
AspLEI	GCGC	4 cut(s)	60, 406, 453, 958
AspS9I	GGNCC	2 cut(s)	1287, 1288
AsuHPI	GGTGA	4 cut(s)	225, 1112, 1157, 1196
BaeGI	GKGCMC	1 cut(s)	1291
BanII	GRGCYC	1 cut(s)	1291
BbsI	GAAGAC	1 cut(s)	1206
BbvI	GCAGC	8 cut(s)	190, 355, 388, 448, 511, 766, 970, 1060
BccI	CCATC	2 cut(s)	266, 1304
BciT130I	CCWGG	1 cut(s)	1250
BclI	TGATCA	1 cut(s)	1005
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	2 cut(s)	674, 1397
BglII	AGATCT	1 cut(s)	614
BisI	GCNGC	8 cut(s)	179, 344, 402, 462, 525, 780, 959, 1074
BlpI	GCTNAGC	1 cut(s)	1175
BlsI	GCNGC	8 cut(s)	180, 345, 403, 463, 526, 781, 960, 1075
Bme1390I	CCNGG	1 cut(s)	1250
BmgT120I	GGNCC	2 cut(s)	1287, 1288
BmiI	GGNNCC	3 cut(s)	630, 1289, 1402
BmrFI	CCNGG	1 cut(s)	1250
BmsI	GCATC	3 cut(s)	86, 270, 466
BpiI	GAAGAC	1 cut(s)	1206
BpmI	CTGGAG	2 cut(s)	983, 1326
Bpu1102I	GCTNAGC	1 cut(s)	1175
BpuEI	CTTGAG	3 cut(s)	719, 821, 834
BsaJI	CCNNGG	2 cut(s)	1194, 1248
Bsc4I	CCNNNNNNNGG	2 cut(s)	866, 1296
Bse1I	ACTGG	1 cut(s)	646
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	1250
BseDI	CCNNGG	2 cut(s)	1194, 1248
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	866, 1296
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	1007, 1077
BseNI	ACTGG	1 cut(s)	646
BseRI	GAGGAG	2 cut(s)	692, 1469
BseSI	GKGCMC	1 cut(s)	1291
BseXI	GCAGC	8 cut(s)	190, 355, 388, 448, 511, 766, 970, 1060
BseYI	CCCAGC	2 cut(s)	527, 1290
BsgI	GTGCAG	1 cut(s)	765
Bsh1236I	CGCG	3 cut(s)	58, 60, 406
BshFI	GGCC	2 cut(s)	217, 1289
BsiSI	CCGG	2 cut(s)	18, 214
BslFI	GGGAC	2 cut(s)	132, 368
BslI	CCNNNNNNNGG	2 cut(s)	866, 1296
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	2 cut(s)	132, 368
BsnI	GGCC	2 cut(s)	217, 1289
Bsp120I	GGGCCC	1 cut(s)	1287
Bsp1286I	GDGCHC	1 cut(s)	1291
Bsp1720I	GCTNAGC	1 cut(s)	1175
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	2 cut(s)	217, 1289
BspCNI	CTCAG	2 cut(s)	1008, 1078
BspFNI	CGCG	3 cut(s)	58, 60, 406
BspHI	TCATGA	2 cut(s)	79, 814
BspLI	GGNNCC	3 cut(s)	630, 1289, 1402
BspPI	GGATC	6 cut(s)	111, 539, 630, 680, 817, 1412
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	646
BssECI	CCNNGG	2 cut(s)	1194, 1248
BssT1I	CCWWGG	1 cut(s)	1194
Bst2UI	CCWGG	1 cut(s)	1250
Bst4CI	ACNGT	7 cut(s)	418, 738, 786, 864, 1109, 1191, 1438
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	2 cut(s)	96, 184
BstC8I	GCNNGC	5 cut(s)	62, 522, 655, 954, 969
BstDEI	CTNAG	4 cut(s)	1016, 1086, 1175, 1349
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	3 cut(s)	58, 60, 406
BstHHI	GCGC	4 cut(s)	60, 406, 453, 958
BstMAI	GTCTC	1 cut(s)	548
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 184, 410, 949, 958, 964
BstNI	CCWGG	1 cut(s)	1250
BstSCI	CCNGG	1 cut(s)	1248
BstSLI	GKGCMC	1 cut(s)	1291
BstUI	CGCG	3 cut(s)	58, 60, 406
BstV1I	GCAGC	8 cut(s)	190, 355, 388, 448, 511, 766, 970, 1060
BstV2I	GAAGAC	1 cut(s)	1206
BstX2I	RGATCY	4 cut(s)	103, 531, 614, 809
BstYI	RGATCY	4 cut(s)	103, 531, 614, 809
BsuRI	GGCC	2 cut(s)	217, 1289
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	5 cut(s)	62, 522, 655, 954, 969
CciI	TCATGA	2 cut(s)	79, 814
CfoI	GCGC	4 cut(s)	60, 406, 453, 958
Cfr13I	GGNCC	2 cut(s)	1287, 1288
CseI	GACGC	1 cut(s)	206
CspCI	CAANNNNNGTGG	6 cut(s)	403, 438, 625, 660, 1393, 1428
DdeI	CTNAG	4 cut(s)	1016, 1086, 1175, 1349
DraI	TTTAAA	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	1194
Eco24I	GRGCYC	1 cut(s)	1291
Eco32I	GATATC	1 cut(s)	1475
EcoRI	GAATTC	2 cut(s)	229, 793
EcoRII	CCWGG	1 cut(s)	1248
EcoRV	GATATC	1 cut(s)	1475
EcoT14I	CCWWGG	1 cut(s)	1194
EcoT38I	GRGCYC	1 cut(s)	1291
ErhI	CCWWGG	1 cut(s)	1194
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FaqI	GGGAC	2 cut(s)	132, 368
FauNDI	CATATG	1 cut(s)	1156
FbaI	TGATCA	1 cut(s)	1005
Fnu4HI	GCNGC	8 cut(s)	179, 344, 402, 462, 525, 780, 959, 1074
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	1291
Fsp4HI	GCNGC	8 cut(s)	179, 344, 402, 462, 525, 780, 959, 1074
FspBI	CTAG	2 cut(s)	674, 1397
FspI	TGCGCA	1 cut(s)	957
GlaI	GCGC	4 cut(s)	59, 405, 452, 957
GluI	GCNGC	8 cut(s)	179, 344, 402, 462, 525, 780, 959, 1074
GsaI	CCCAGC	2 cut(s)	531, 1294
GsuI	CTGGAG	2 cut(s)	983, 1326
HaeIII	GGCC	2 cut(s)	217, 1289
HapII	CCGG	2 cut(s)	18, 214
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	4 cut(s)	60, 406, 453, 958
Hin6I	GCGC	4 cut(s)	58, 404, 451, 956
HinP1I	GCGC	4 cut(s)	58, 404, 451, 956
HindIII	AAGCTT	2 cut(s)	518, 1172
HinfI	GANTC	5 cut(s)	120, 365, 587, 1066, 1148
HpaII	CCGG	2 cut(s)	18, 214
HphI	GGTGA	4 cut(s)	225, 1112, 1157, 1196
Hpy166II	GTNNAC	2 cut(s)	734, 1187
Hpy188I	TCNGA	3 cut(s)	47, 901, 1017
Hpy8I	GTNNAC	2 cut(s)	734, 1187
HpyAV	CCTTC	4 cut(s)	128, 228, 902, 1120
HpyCH4III	ACNGT	7 cut(s)	418, 738, 786, 864, 1109, 1191, 1438
HpyCH4IV	ACGT	1 cut(s)	1054
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 184, 410, 949, 958, 964
HpyF3I	CTNAG	4 cut(s)	1016, 1086, 1175, 1349
HpySE526I	ACGT	1 cut(s)	1054
HspAI	GCGC	4 cut(s)	58, 404, 451, 956
Ksp22I	TGATCA	1 cut(s)	1005
LmnI	GCTCC	5 cut(s)	20, 679, 934, 964, 1406
Lsp1109I	GCAGC	8 cut(s)	190, 355, 388, 448, 511, 766, 970, 1060
LweI	GCATC	3 cut(s)	86, 270, 466
MaeI	CTAG	2 cut(s)	674, 1397
MaeII	ACGT	1 cut(s)	1054
MaeIII	GTNAC	3 cut(s)	316, 580, 1050
MboII	GAAGA	5 cut(s)	68, 662, 853, 1211, 1334
MfeI	CAATTG	1 cut(s)	1035
MflI	RGATCY	4 cut(s)	103, 531, 614, 809
MhlI	GDGCHC	1 cut(s)	1291
MlyI	GAGTC	2 cut(s)	114, 1157
MroXI	GAANNNNTTC	2 cut(s)	669, 1392
MseI	TTAA	3 cut(s)	284, 431, 506
MslI	CAYNNNNRTG	2 cut(s)	485, 1282
MspA1I	CMGCKG	1 cut(s)	961
MspI	CCGG	2 cut(s)	18, 214
MspR9I	CCNGG	1 cut(s)	1250
MunI	CAATTG	1 cut(s)	1035
MvaI	CCWGG	1 cut(s)	1250
MvnI	CGCG	3 cut(s)	58, 60, 406
MwoI	GCNNNNNNNGC	6 cut(s)	96, 184, 410, 949, 958, 964
NdeI	CATATG	1 cut(s)	1156
NlaIV	GGNNCC	3 cut(s)	630, 1289, 1402
NmuCI	GTSAC	1 cut(s)	580
NsbI	TGCGCA	1 cut(s)	957
PagI	TCATGA	2 cut(s)	79, 814
PdmI	GAANNNNTTC	2 cut(s)	669, 1392
PfeI	GAWTC	3 cut(s)	365, 587, 1066
PflMI	CCANNNNNTGG	1 cut(s)	866
PkrI	GCNGC	8 cut(s)	180, 345, 403, 463, 526, 781, 960, 1075
PleI	GAGTC	2 cut(s)	114, 1156
PpsI	GAGTC	2 cut(s)	114, 1156
Psp6I	CCWGG	1 cut(s)	1248
PspFI	CCCAGC	2 cut(s)	527, 1290
PspGI	CCWGG	1 cut(s)	1248
PspN4I	GGNNCC	3 cut(s)	630, 1289, 1402
PspOMI	GGGCCC	1 cut(s)	1287
PspPI	GGNCC	2 cut(s)	1287, 1288
PsuI	RGATCY	4 cut(s)	103, 531, 614, 809
PvuII	CAGCTG	1 cut(s)	961
RseI	CAYNNNNRTG	2 cut(s)	485, 1282
SaqAI	TTAA	3 cut(s)	284, 431, 506
SatI	GCNGC	8 cut(s)	179, 344, 402, 462, 525, 780, 959, 1074
Sau96I	GGNCC	2 cut(s)	1287, 1288
SchI	GAGTC	2 cut(s)	114, 1157
ScrFI	CCNGG	1 cut(s)	1250
SduI	GDGCHC	1 cut(s)	1291
SfaNI	GCATC	3 cut(s)	86, 270, 466
SmiMI	CAYNNNNRTG	2 cut(s)	485, 1282
SmlI	CTYRAG	3 cut(s)	698, 836, 849
SmoI	CTYRAG	3 cut(s)	698, 836, 849
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	2 cut(s)	674, 1397
StyD4I	CCNGG	1 cut(s)	1248
StyI	CCWWGG	1 cut(s)	1194
TaaI	ACNGT	7 cut(s)	418, 738, 786, 864, 1109, 1191, 1438
TaiI	ACGT	1 cut(s)	1057
TaqI	TCGA	2 cut(s)	457, 946
TfiI	GAWTC	3 cut(s)	365, 587, 1066
Tru1I	TTAA	3 cut(s)	284, 431, 506
Tru9I	TTAA	3 cut(s)	284, 431, 506
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	8 cut(s)	178, 343, 401, 461, 524, 779, 958, 1073
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	9 cut(s)	15, 68, 357, 726, 831, 884, 1010, 1139, 1173
TspGWI	ACGGA	1 cut(s)	1288
Van91I	CCANNNNNTGG	1 cut(s)	866
XapI	RAATTY	8 cut(s)	40, 229, 437, 571, 793, 1010, 1091, 1117
XbaI	TCTAGA	1 cut(s)	673
XmnI	GAANNNNTTC	2 cut(s)	669, 1392
XspI	CTAG	2 cut(s)	674, 1397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.