Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005722.1

Orthogroup ID

OG0001124

Physical Location & Seq

Genomic Coordinates Reverse (-)

2645 .. 8123

Gene Structure 5479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005722.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atgcagatgaatttggagtattatgctatagacagccagggttttgttaccaataatgagagagctttagcgcagctttatggggacaaggacgattcacgcgaagccgaagcgtgtttgagtgagatggctgcacgtgtagccacagtctttgcttctttaagggaatttcctattgttcgctaccgagctgccaataggattgatgccaccatggagaccacttttcgtgatttaattcctacaaagcttgctgctggtgtctgggattgtctcatgcattacaaaagaacaattccaaatttccctcagatagaaacatgcgagttacttatccttgaaagatctgtggatcaggttgcgagcataaacggtggtcctcctgaccagaaagatgttcttctagaggagcatgatcctgtctggcttgaacttcgcgatcatcatttaggatttgccttggaatggttgaattcaaaactttccaatcttaagcagaacaaggctgcactattcgaaaattcaagaattgtcaggaaccttgagctcccattcctttcggagctggagcagggtcttgtttttggagatgcaggaataaaagaggtgatcatgtttctgagaatacatgggccgtatattactcgcgaacataagctgcgcttgttgatgattcttgctgccatctatcctgagaaatttgaggatgaagaagatctacatatgatgatgaagtacgcatatttactaccccaggatatgactgttgtgaggaatatgaagttgattggggagagcagagaagcctcatctggaatttttcctctgaagtttggtattgctaaggaacttatagaaaagcttagcaatggtgcactgtcagaggaattatatccatgtgtgaatcccaacgctcgtttactgagatcgaggaggacaccaatgtgggcccaccgacggaattccgataatgggttgtcaagggatgcatctacagatttcgaaaagatgggccgacgcatatttgtagttatagtaggtggagctactagatcagagcttagggtgtgtcggaaactcacagcaaagctcaaaagggaagttattctgggctcctcatctcttgacgatcctgcaacttttgttacgaatctgaaaatgatcacagcagacgaccaaccgctcacgttggatgatatccagatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0016020 GO:0019898 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 map04721

Pfam Domains

Protein Families

Sec1

Protein Analysis

402

Amino Acids

45.85

Weight (kDa)

5.76

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12360 AT4G12120
fragaria_vesca	FvH4_2g27020 FvH4_2g27020 FvH4_2g27020 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992
malus_domestica	MD04G1079000.v1.1 MD06G1073800.v1.1
prunus_persica	Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1
pyrus_communis	pycom04g07080 pycom06g05270
rosa_chinensis	RchiOBHm_Chr5g0038751 RchiOBHm_Chr6g0295901 RchiOBHm_Chr7g0201411
rosa_laevigata	RLG00000003677 RLG00000011758 RLG00000033865
rosa_multiflora	Rmu_sc0001469.1_g000008 Rmu_sc0005722.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042410 Rroxscaffold_3G00255300 Rroxscaffold_7G00172070
rosa_rugosa	Rorug05G0173300.1 Rorug05G0173400 Rorug05G0173500 Rorug06G0255000 Rorug06G0255000 Rorug07G0063400 Rorug07G0063500
rosa_samantha	Rh5AG260700 Rh5BG264400 Rh5CG297100 Rh5DG272800 Rh6AG368700 Rh6BG376400 Rh6CG382600 Rh6DG369200 Rh7AG190300 Rh7BG192700 Rh7CG201800 Rh7DG195300
rosa_wichuraiana	Rw5G024070 Rw5G024360 Rw6G032150 Rw7G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1183
AccII	CGCG	3 cut(s)	102, 438, 648
AciI	CCGC	1 cut(s)	1181
AclWI	GGATC	3 cut(s)	360, 410, 1124
AcsI	RAATTY	8 cut(s)	10, 167, 301, 472, 520, 698, 816, 961
AcuI	CTGAAG	1 cut(s)	848
AcvI	CACGTG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	737
AfiI	CCNNNNNNNGG	3 cut(s)	465, 957, 972
AflII	CTTAAG	1 cut(s)	491
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	5 cut(s)	341, 431, 472, 477, 525
AjnI	CCWGG	2 cut(s)	36, 753
AleI	CACNNNNGTG	1 cut(s)	943
Alw21I	GWGCWC	2 cut(s)	549, 877
Alw26I	GTCTC	2 cut(s)	212, 278
Alw44I	GTGCAC	1 cut(s)	873
AlwI	GGATC	3 cut(s)	360, 410, 1124
AoxI	GGCC	3 cut(s)	632, 948, 1012
ApaI	GGGCCC	1 cut(s)	952
ApaLI	GTGCAC	1 cut(s)	873
ApeKI	GCWGC	7 cut(s)	73, 131, 191, 254, 506, 658, 680
ApoI	RAATTY	8 cut(s)	10, 167, 301, 472, 520, 698, 816, 961
Asp700I	GAANNNNTTC	1 cut(s)	1104
AspLEI	GCGC	2 cut(s)	73, 663
AspS9I	GGNCC	5 cut(s)	377, 632, 948, 949, 1012
AsuHPI	GGTGA	1 cut(s)	619
AsuII	TTCGAA	2 cut(s)	516, 1002
AvaII	GGWCC	1 cut(s)	377
BaeGI	GKGCMC	2 cut(s)	877, 952
BanII	GRGCYC	3 cut(s)	549, 952, 1115
BarI	GAAGNNNNNNTAC	2 cut(s)	702, 734
BbrPI	CACGTG	1 cut(s)	137
Bbv12I	GWGCWC	2 cut(s)	549, 877
BbvI	GCAGC	7 cut(s)	85, 118, 178, 241, 493, 645, 667
BccI	CCATC	3 cut(s)	121, 692, 1003
BceAI	ACGGC	1 cut(s)	619
BciT130I	CCWGG	2 cut(s)	38, 755
BclI	TGATCA	2 cut(s)	609, 1161
BcoDI	GTCTC	2 cut(s)	212, 278
BfaI	CTAG	2 cut(s)	404, 1050
BfmI	CTRYAG	2 cut(s)	27, 993
BfrI	CTTAAG	1 cut(s)	491
BglII	AGATCT	3 cut(s)	344, 715, 1203
BisI	GCNGC	7 cut(s)	74, 132, 192, 255, 507, 659, 681
BlpI	GCTNAGC	1 cut(s)	863
BlsI	GCNGC	7 cut(s)	75, 133, 193, 256, 508, 660, 682
Bme1390I	CCNGG	2 cut(s)	38, 755
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	5 cut(s)	377, 632, 948, 949, 1012
BmiI	GGNNCC	3 cut(s)	539, 950, 1114
BmrFI	CCNGG	2 cut(s)	38, 755
BmsI	GCATC	4 cut(s)	196, 580, 976, 998
BpmI	CTGGAG	1 cut(s)	587
Bpu10I	CCTNAGC	2 cut(s)	843, 1061
Bpu1102I	GCTNAGC	1 cut(s)	863
Bpu14I	TTCGAA	2 cut(s)	516, 1002
BpuEI	CTTGAG	1 cut(s)	563
BsaAI	YACGTR	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	4 cut(s)	37, 213, 459, 753
Bsc4I	CCNNNNNNNGG	3 cut(s)	465, 957, 972
Bse3DI	GCAATG	1 cut(s)	874
BseBI	CCWGG	2 cut(s)	38, 755
BseDI	CCNNGG	4 cut(s)	37, 213, 459, 753
BseGI	GGATG	3 cut(s)	712, 991, 1198
BseLI	CCNNNNNNNGG	3 cut(s)	465, 957, 972
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	4 cut(s)	323, 611, 684, 914
BseRI	GAGGAG	3 cut(s)	422, 946, 1105
BseSI	GKGCMC	2 cut(s)	877, 952
BseXI	GCAGC	7 cut(s)	85, 118, 178, 241, 493, 645, 667
BsgI	GTGCAG	2 cut(s)	117, 492
Bsh1236I	CGCG	3 cut(s)	102, 438, 648
BshFI	GGCC	3 cut(s)	634, 950, 1014
BsiHKAI	GWGCWC	2 cut(s)	549, 877
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	465, 957, 972
BsmAI	GTCTC	2 cut(s)	212, 278
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	634, 950, 1014
Bso31I	GGTCTC	1 cut(s)	212
Bsp119I	TTCGAA	2 cut(s)	516, 1002
Bsp120I	GGGCCC	1 cut(s)	948
Bsp1286I	GDGCHC	4 cut(s)	549, 877, 952, 1115
Bsp1720I	GCTNAGC	1 cut(s)	863
Bsp19I	CCATGG	1 cut(s)	213
Bsp68I	TCGCGA	2 cut(s)	438, 648
BspACI	CCGC	1 cut(s)	1181
BspANI	GGCC	3 cut(s)	634, 950, 1014
BspCNI	CTCAG	4 cut(s)	322, 612, 685, 915
BspFNI	CGCG	3 cut(s)	102, 438, 648
BspLI	GGNNCC	3 cut(s)	539, 950, 1114
BspPI	GGATC	3 cut(s)	360, 410, 1124
BspT104I	TTCGAA	2 cut(s)	516, 1002
BspTI	CTTAAG	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	1183
BsrDI	GCAATG	1 cut(s)	874
BssECI	CCNNGG	4 cut(s)	37, 213, 459, 753
BssT1I	CCWWGG	2 cut(s)	213, 459
Bst2UI	CCWGG	2 cut(s)	38, 755
Bst4CI	ACNGT	4 cut(s)	148, 374, 766, 879
BstAFI	CTTAAG	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	137
BstBI	TTCGAA	2 cut(s)	516, 1002
BstC8I	GCNNGC	2 cut(s)	252, 364
BstDEI	CTNAG	7 cut(s)	309, 620, 693, 843, 863, 923, 1061
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	3 cut(s)	712, 991, 1198
BstFNI	CGCG	3 cut(s)	102, 438, 648
BstHHI	GCGC	2 cut(s)	73, 663
BstMAI	GTCTC	2 cut(s)	212, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	38, 755
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	36, 753
BstSFI	CTRYAG	2 cut(s)	27, 993
BstSLI	GKGCMC	2 cut(s)	877, 952
BstUI	CGCG	3 cut(s)	102, 438, 648
BstV1I	GCAGC	7 cut(s)	85, 118, 178, 241, 493, 645, 667
BstX2I	RGATCY	3 cut(s)	344, 715, 1203
BstYI	RGATCY	3 cut(s)	344, 715, 1203
BsuRI	GGCC	3 cut(s)	634, 950, 1014
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	712, 991, 1198
BtsIMutI	CAGTG	1 cut(s)	875
BtuMI	TCGCGA	2 cut(s)	438, 648
Cac8I	GCNNGC	2 cut(s)	252, 364
CfoI	GCGC	2 cut(s)	73, 663
Cfr13I	GGNCC	5 cut(s)	377, 632, 948, 949, 1012
CseI	GACGC	1 cut(s)	1026
Csp6I	GTAC	1 cut(s)	736
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	7 cut(s)	214, 277, 321, 413, 613, 629, 897
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	7 cut(s)	309, 620, 693, 843, 863, 923, 1061
Ecl136II	GAGCTC	1 cut(s)	547
Eco130I	CCWWGG	2 cut(s)	213, 459
Eco24I	GRGCYC	3 cut(s)	549, 952, 1115
Eco31I	GGTCTC	1 cut(s)	212
Eco32I	GATATC	1 cut(s)	1198
Eco47I	GGWCC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	848
Eco72I	CACGTG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	547
EcoRI	GAATTC	2 cut(s)	472, 961
EcoRII	CCWGG	2 cut(s)	36, 753
EcoRV	GATATC	1 cut(s)	1198
EcoT14I	CCWWGG	2 cut(s)	213, 459
EcoT22I	ATGCAT	2 cut(s)	282, 991
EcoT38I	GRGCYC	3 cut(s)	549, 952, 1115
ErhI	CCWWGG	2 cut(s)	213, 459
FaeI	CATG	7 cut(s)	217, 280, 324, 416, 616, 632, 900
FalI	AAGNNNNNCTT	4 cut(s)	384, 416, 647, 679
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	7 cut(s)	213, 276, 320, 412, 612, 628, 896
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	2 cut(s)	609, 1161
Fnu4HI	GCNGC	7 cut(s)	74, 132, 192, 255, 507, 659, 681
FokI	GGATG	3 cut(s)	719, 998, 1205
FriOI	GRGCYC	3 cut(s)	549, 952, 1115
Fsp4HI	GCNGC	7 cut(s)	74, 132, 192, 255, 507, 659, 681
FspBI	CTAG	2 cut(s)	404, 1050
GlaI	GCGC	2 cut(s)	72, 662
GluI	GCNGC	7 cut(s)	74, 132, 192, 255, 507, 659, 681
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	3 cut(s)	634, 950, 1014
HgaI	GACGC	1 cut(s)	1026
HhaI	GCGC	2 cut(s)	73, 663
Hin1II	CATG	7 cut(s)	217, 280, 324, 416, 616, 632, 900
Hin6I	GCGC	2 cut(s)	71, 661
HinP1I	GCGC	2 cut(s)	71, 661
HindIII	AAGCTT	2 cut(s)	248, 860
HinfI	GANTC	4 cut(s)	95, 673, 904, 1150
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	2 cut(s)	875, 920
Hpy8I	GTNNAC	2 cut(s)	875, 920
Hpy99I	CGWCG	2 cut(s)	960, 1020
HpyCH4III	ACNGT	4 cut(s)	148, 374, 766, 879
HpyCH4IV	ACGT	2 cut(s)	136, 1187
HpyCH4V	TGCA	8 cut(s)	4, 134, 280, 509, 593, 875, 989, 1136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	7 cut(s)	309, 620, 693, 843, 863, 923, 1061
HpySE526I	ACGT	2 cut(s)	136, 1187
Hsp92II	CATG	7 cut(s)	217, 280, 324, 416, 616, 632, 900
HspAI	GCGC	2 cut(s)	71, 661
Ksp22I	TGATCA	2 cut(s)	609, 1161
LmnI	GCTCC	6 cut(s)	409, 552, 562, 568, 1043, 1118
Lsp1109I	GCAGC	7 cut(s)	85, 118, 178, 241, 493, 645, 667
LweI	GCATC	4 cut(s)	196, 580, 976, 998
MaeI	CTAG	2 cut(s)	404, 1050
MaeII	ACGT	2 cut(s)	136, 1187
MaeIII	GTNAC	3 cut(s)	46, 327, 1144
MbiI	CCGCTC	1 cut(s)	1183
MboII	GAAGA	3 cut(s)	392, 722, 725
MflI	RGATCY	3 cut(s)	344, 715, 1203
MhlI	GDGCHC	4 cut(s)	549, 877, 952, 1115
MmeI	TCCRAC	2 cut(s)	1052, 1170
Mph1103I	ATGCAT	2 cut(s)	282, 991
MroXI	GAANNNNTTC	1 cut(s)	1104
MseI	TTAA	3 cut(s)	161, 236, 492
MslI	CAYNNNNRTG	1 cut(s)	943
MspCI	CTTAAG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	38, 755
MvaI	CCWGG	2 cut(s)	38, 755
MvnI	CGCG	3 cut(s)	102, 438, 648
MwoI	GCNNNNNNNGC	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	723
NlaIII	CATG	7 cut(s)	217, 280, 324, 416, 616, 632, 900
NlaIV	GGNNCC	3 cut(s)	539, 950, 1114
NruI	TCGCGA	2 cut(s)	438, 648
NsiI	ATGCAT	2 cut(s)	282, 991
NspI	RCATGY	1 cut(s)	324
NspV	TTCGAA	2 cut(s)	516, 1002
OliI	CACNNNNGTG	1 cut(s)	943
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	1104
PfeI	GAWTC	4 cut(s)	95, 673, 904, 1150
PkrI	GCNGC	7 cut(s)	75, 133, 193, 256, 508, 660, 682
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	2 cut(s)	36, 753
PspCI	CACGTG	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	36, 753
PspN4I	GGNNCC	3 cut(s)	539, 950, 1114
PspOMI	GGGCCC	1 cut(s)	948
PspPI	GGNCC	5 cut(s)	377, 632, 948, 949, 1012
PsuI	RGATCY	3 cut(s)	344, 715, 1203
RruI	TCGCGA	2 cut(s)	438, 648
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
RseI	CAYNNNNRTG	1 cut(s)	943
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	161, 236, 492
SatI	GCNGC	7 cut(s)	74, 132, 192, 255, 507, 659, 681
Sau96I	GGNCC	5 cut(s)	377, 632, 948, 949, 1012
ScrFI	CCNGG	2 cut(s)	38, 755
SduI	GDGCHC	4 cut(s)	549, 877, 952, 1115
SfaNI	GCATC	4 cut(s)	196, 580, 976, 998
SfcI	CTRYAG	2 cut(s)	27, 993
SfuI	TTCGAA	2 cut(s)	516, 1002
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	943
SmlI	CTYRAG	2 cut(s)	491, 542
SmoI	CTYRAG	2 cut(s)	491, 542
SsiI	CCGC	1 cut(s)	1181
SspMI	CTAG	2 cut(s)	404, 1050
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	36, 753
StyI	CCWWGG	2 cut(s)	213, 459
TaaI	ACNGT	4 cut(s)	148, 374, 766, 879
TaiI	ACGT	2 cut(s)	139, 1190
TaqI	TCGA	3 cut(s)	516, 929, 1002
TfiI	GAWTC	4 cut(s)	95, 673, 904, 1150
Tru1I	TTAA	3 cut(s)	161, 236, 492
Tru9I	TTAA	3 cut(s)	161, 236, 492
TscAI	CASTG	1 cut(s)	882
TseI	GCWGC	7 cut(s)	73, 131, 191, 254, 506, 658, 680
TspDTI	ATGAA	4 cut(s)	23, 723, 746, 794
TspGWI	ACGGA	1 cut(s)	973
TspRI	CASTG	1 cut(s)	882
Vha464I	CTTAAG	1 cut(s)	491
VneI	GTGCAC	1 cut(s)	873
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	8 cut(s)	10, 167, 301, 472, 520, 698, 816, 961
XbaI	TCTAGA	1 cut(s)	403
XceI	RCATGY	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	1104
XspI	CTAG	2 cut(s)	404, 1050
Zsp2I	ATGCAT	2 cut(s)	282, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.