RchiOBHm_Chr6g0295901

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
57758872 .. 57766834
7963 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26557

Sequence Viewer

Length: 1836 bp
ATGCCGTTCTCCAGCTCCGGCGGTTCGTCATCATATAAGAATTTCAGACAAATAACGCGCGACCGATTATTGCATGAGATGCTTGGGTCTTGCAAAAGGGGGGACTCAACGCAATGGAAGGTACTTATCATGGATGAACTTACTACTACGATAATGTCTTACACTTGCACAGTCAGTGATACTACAGAAGAGGGTGTTTCATTGCTTGAACGCATAGAAAAGAAAAGGCAGCCAATGCCCCACATGGACGCAATATACTTTATCCGGCCTTCCAAAAAGAAGGCATTTATTTTCTTCAGTTCACCTATTTCGAAAGATTTGGTTGGTCGCATCAAGGAGGATGGAAGTGTATTAAGTCGCATATCTGCATTGAGTGAGATGAATTTGGAGTATTTTGCTATAGACAGCCAGGTTTTTGTTACCAACAATGAGAGGGCTTTAGAGCAGCTTTATGGGGACAAGGAGGATTCATGCAAAGGTATAGCGTGTTTGAATGAGATAGCTGCACGTATTGCCACAGTCTTTGCTTCTTTAAAGGAATTTCCTATTGTGCGCTACCGAGCTGCTAAGTTGCTTGATGCCACCACGATTACCACTTTTCCTGATTTAATTCCTACAAAGCTTGCTGCTGGGATCTGGGATTGTCTCATAAAATATAAAAATACAATTCCAAATTTCCCTGTGACAGAATCATGCGAGTTGCTTATCCTTGACAGATCTGTGGATCAGATTGCACCGGTCATACATGAATGGACATATGATGCCATGTGTCATGACTTGTTAAATATGGAAGGAAATAGATATCTGCTTGAGGTTCCAAGCAAAACTGGTGGTCTGGCTGACAAGAAAGGTGTTCTTCTAGAGGAGCATGATCCTGTCTGGCTTGAGTTTCGCCATGAACACATAGCAGAGGTTAGTGAACGGTTGAATGAGAAACTGACCAATTTTCTTTCAAATAATAAGGCAGCACAATTGCAGAATTCAAGTGATTGGGGATCTCATGAACGATCTACGAGGGAACTCAAGAAGATAACTCAAGCATTACCACAGTATGGCAAACAAAAGGACAGGCTTTCCCTTCATTCAGAGATTGCAAAGAAAATCCACTCAATTAGCAGGGAGCTTGGGCTTCGAGAGCTTGCGCAGCTGGAGCAAGCTCTTGTTTTTGGATATGCGGGAATGAAAGATGTGATCAAATTTCTGAGGACAAAAGATGATACAACTGGCGAAAATAAGTTACGTTTGTTGATGATTCTTGCTGCCATTTATCCTGAGAAATTTGAGGGTGAGGAGGGTCAAGAGAATTTGATGAAGTTATGCAATAATCAGAAGAATTGTGCGTCTAGGAAAGAACGTCCAAGTGAAGAAAAATGGCAGTTTTCGAGCTTTTATCCCATTATAGAGGAACTAATAGAAAAGCTTAGCAAAGGTGAACTGTCCAAGGAAGACTATCCATGTCTAAATGACCCAACCCCAACTTTACATCAATCCCCCCAGGCTCATTCAATAAGATCAAGACGGACACCGACATGGGCCCAGCGTGGGATTTCTGGAGATGGGATTTCAAGGCATGCATCCAATGATTTCAAAAAGATGGGCAAACGCATATTTGTAGTTATAGTAGGCGGAGCTACTAGATCAGAGCTTAGAGTTTGCCATAAGCTAACAGCGAAGCTGAAAAGGGAAGTTGTTCTAGGCTCCACATCTCTTGATGATCCTGCAACTTTTATTACGGTAAAAAGCTCATACTTTTCTATCCTCAACAAGCAGATATCTCCTCTAACAAGTAGTTATATTGAAAATGTCAACATTGATGTAATATTGTGCAGAAAGTAA

Protein Analysis

611

Amino Acids

69.34

Weight (kDa)

8.41

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 40 - 577 5.1e-112 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1143
AccB7I CCANNNNNTGG 1 cut(s) 1052
AccII CGCG 2 cut(s) 58, 60
AciI CCGC 3 cut(s) 21, 1175, 1626
AclWI GGATC 5 cut(s) 641, 732, 866, 1003, 1709
AcsI RAATTY 8 cut(s) 40, 382, 539, 673, 979, 1196, 1277, 1303
AcuI CTGAAG 1 cut(s) 280
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 1052, 1542
AgeI ACCGGT 1 cut(s) 736
AgsI TTSAA 9 cut(s) 209, 493, 928, 954, 984, 1506, 1566, 1588, 1799
AjnI CCWGG 2 cut(s) 408, 1494
Alw26I GTCTC 1 cut(s) 650
AlwI GGATC 5 cut(s) 641, 732, 866, 1003, 1709
AoxI GGCC 2 cut(s) 266, 1533
ApaI GGGCCC 1 cut(s) 1537
ApeKI GCWGC 8 cut(s) 229, 445, 503, 563, 626, 965, 1144, 1259
ApoI RAATTY 8 cut(s) 40, 382, 539, 673, 979, 1196, 1277, 1303
AsiGI ACCGGT 1 cut(s) 736
Asp700I GAANNNNTTC 1 cut(s) 1689
AspLEI GCGC 3 cut(s) 60, 555, 1144
AspS9I GGNCC 2 cut(s) 1533, 1534
AsuHPI GGTGA 3 cut(s) 294, 1298, 1442
AsuII TTCGAA 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 1537
BanII GRGCYC 1 cut(s) 1537
BbsI GAAGAC 1 cut(s) 1452
BbvI GCAGC 8 cut(s) 241, 457, 490, 550, 613, 977, 1156, 1246
BccI CCATC 3 cut(s) 335, 1550, 1588
BciT130I CCWGG 2 cut(s) 410, 1496
BclI TGATCA 1 cut(s) 1191
BcoDI GTCTC 1 cut(s) 650
BfaI CTAG 4 cut(s) 860, 1344, 1635, 1694
BfmI CTRYAG 2 cut(s) 183, 399
BglII AGATCT 1 cut(s) 716
BisI GCNGC 8 cut(s) 230, 446, 504, 564, 627, 966, 1145, 1260
BlpI GCTNAGC 1 cut(s) 1421
BlsI GCNGC 8 cut(s) 231, 447, 505, 565, 628, 967, 1146, 1261
Bme1390I CCNGG 2 cut(s) 410, 1496
BmgT120I GGNCC 2 cut(s) 1533, 1534
BmiI GGNNCC 3 cut(s) 816, 1535, 1699
BmrFI CCNGG 2 cut(s) 410, 1496
BmsI GCATC 5 cut(s) 69, 339, 568, 751, 1583
BpiI GAAGAC 1 cut(s) 1452
BpmI CTGGAG 2 cut(s) 1169, 1572
Bpu1102I GCTNAGC 1 cut(s) 1421
Bpu14I TTCGAA 1 cut(s) 311
BpuEI CTTGAG 4 cut(s) 830, 905, 1007, 1020
BsaAI YACGTR 1 cut(s) 509
BsaJI CCNNGG 2 cut(s) 1440, 1494
BsaWI WCCGGW 1 cut(s) 736
Bsc4I CCNNNNNNNGG 2 cut(s) 1052, 1542
Bse118I RCCGGY 1 cut(s) 736
Bse1I ACTGG 2 cut(s) 832, 1228
Bse3DI GCAATG 2 cut(s) 119, 200
BseBI CCWGG 2 cut(s) 410, 1496
BseDI CCNNGG 2 cut(s) 1440, 1494
BseGI GGATG 3 cut(s) 139, 346, 1574
BseLI CCNNNNNNNGG 2 cut(s) 1052, 1542
BseMI GCAATG 2 cut(s) 119, 200
BseMII CTCAG 2 cut(s) 1193, 1263
BseNI ACTGG 2 cut(s) 832, 1228
BseRI GAGGAG 3 cut(s) 878, 1304, 1767
BseSI GKGCMC 1 cut(s) 1537
BseXI GCAGC 8 cut(s) 241, 457, 490, 550, 613, 977, 1156, 1246
BseYI CCCAGC 2 cut(s) 629, 1536
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 2 cut(s) 58, 60
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 268, 1535
BshTI ACCGGT 1 cut(s) 736
BsiEI CGRYCG 1 cut(s) 64
BsiSI CCGG 3 cut(s) 18, 265, 737
BslFI GGGAC 2 cut(s) 116, 470
BslI CCNNNNNNNGG 2 cut(s) 1052, 1542
BsmAI GTCTC 1 cut(s) 650
BsmFI GGGAC 2 cut(s) 116, 470
BsnI GGCC 2 cut(s) 268, 1535
Bsp119I TTCGAA 1 cut(s) 311
Bsp120I GGGCCC 1 cut(s) 1533
Bsp1286I GDGCHC 1 cut(s) 1537
Bsp1720I GCTNAGC 1 cut(s) 1421
BspACI CCGC 3 cut(s) 21, 1175, 1626
BspANI GGCC 2 cut(s) 268, 1535
BspCNI CTCAG 2 cut(s) 1194, 1264
BspFNI CGCG 2 cut(s) 58, 60
BspHI TCATGA 2 cut(s) 772, 1000
BspLI GGNNCC 3 cut(s) 816, 1535, 1699
BspPI GGATC 5 cut(s) 641, 732, 866, 1003, 1709
BspT104I TTCGAA 1 cut(s) 311
BsrDI GCAATG 2 cut(s) 119, 200
BsrFI RCCGGY 1 cut(s) 736
BsrI ACTGG 2 cut(s) 832, 1228
BssAI RCCGGY 1 cut(s) 736
BssECI CCNNGG 2 cut(s) 1440, 1494
BssT1I CCWWGG 1 cut(s) 1440
Bst2UI CCWGG 2 cut(s) 410, 1496
Bst4CI ACNGT 6 cut(s) 172, 520, 924, 1050, 1437, 1735
Bst6I CTCTTC 1 cut(s) 183
BstAPI GCANNNNNTGC 3 cut(s) 79, 235, 512
BstBAI YACGTR 1 cut(s) 509
BstBI TTCGAA 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 624, 1140, 1155, 1572
BstDEI CTNAG 5 cut(s) 567, 1202, 1272, 1421, 1646
BstF5I GGATG 3 cut(s) 139, 346, 1574
BstFNI CGCG 2 cut(s) 58, 60
BstHHI GCGC 3 cut(s) 60, 555, 1144
BstMAI GTCTC 1 cut(s) 650
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 6 cut(s) 79, 235, 512, 1135, 1144, 1150
BstNI CCWGG 2 cut(s) 410, 1496
BstNSI RCATGY 1 cut(s) 1574
BstSCI CCNGG 2 cut(s) 408, 1494
BstSFI CTRYAG 2 cut(s) 183, 399
BstSLI GKGCMC 1 cut(s) 1537
BstUI CGCG 2 cut(s) 58, 60
BstV1I GCAGC 8 cut(s) 241, 457, 490, 550, 613, 977, 1156, 1246
BstV2I GAAGAC 1 cut(s) 1452
BstX2I RGATCY 3 cut(s) 633, 716, 995
BstYI RGATCY 3 cut(s) 633, 716, 995
BsuRI GGCC 2 cut(s) 268, 1535
BtsCI GGATG 3 cut(s) 139, 346, 1574
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 4 cut(s) 624, 1140, 1155, 1572
CciI TCATGA 2 cut(s) 772, 1000
CfoI GCGC 3 cut(s) 60, 555, 1144
Cfr10I RCCGGY 1 cut(s) 736
Cfr13I GGNCC 2 cut(s) 1533, 1534
CseI GACGC 2 cut(s) 257, 1329
Csp6I GTAC 1 cut(s) 122
CspAI ACCGGT 1 cut(s) 736
CspCI CAANNNNNGTGG 6 cut(s) 505, 540, 811, 846, 1690, 1725
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 5 cut(s) 567, 1202, 1272, 1421, 1646
DraI TTTAAA 1 cut(s) 534
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 1641
Eco130I CCWWGG 1 cut(s) 1440
Eco24I GRGCYC 1 cut(s) 1537
Eco32I GATATC 2 cut(s) 803, 1773
Eco57I CTGAAG 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 979
EcoRII CCWGG 2 cut(s) 408, 1494
EcoRV GATATC 2 cut(s) 803, 1773
EcoT14I CCWWGG 1 cut(s) 1440
EcoT22I ATGCAT 1 cut(s) 1576
EcoT38I GRGCYC 1 cut(s) 1537
ErhI CCWWGG 1 cut(s) 1440
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FaqI GGGAC 2 cut(s) 116, 470
FauI CCCGC 1 cut(s) 1168
FauNDI CATATG 1 cut(s) 757
FbaI TGATCA 1 cut(s) 1191
Fnu4HI GCNGC 8 cut(s) 230, 446, 504, 564, 627, 966, 1145, 1260
FokI GGATG 3 cut(s) 146, 353, 1561
FriOI GRGCYC 1 cut(s) 1537
Fsp4HI GCNGC 8 cut(s) 230, 446, 504, 564, 627, 966, 1145, 1260
FspBI CTAG 4 cut(s) 860, 1344, 1635, 1694
FspI TGCGCA 1 cut(s) 1143
GlaI GCGC 3 cut(s) 59, 554, 1143
GluI GCNGC 8 cut(s) 230, 446, 504, 564, 627, 966, 1145, 1260
GsaI CCCAGC 2 cut(s) 633, 1540
GsuI CTGGAG 2 cut(s) 1169, 1572
HaeIII GGCC 2 cut(s) 268, 1535
HapII CCGG 3 cut(s) 18, 265, 737
HgaI GACGC 2 cut(s) 257, 1329
HhaI GCGC 3 cut(s) 60, 555, 1144
Hin6I GCGC 3 cut(s) 58, 553, 1142
HinP1I GCGC 3 cut(s) 58, 553, 1142
HincII GTYRAC 1 cut(s) 1807
HindII GTYRAC 1 cut(s) 1807
HindIII AAGCTT 2 cut(s) 620, 1418
HinfI GANTC 4 cut(s) 104, 467, 689, 1252
HpaII CCGG 3 cut(s) 18, 265, 737
HphI GGTGA 3 cut(s) 294, 1298, 1442
Hpy166II GTNNAC 4 cut(s) 302, 920, 1433, 1807
Hpy188I TCNGA 6 cut(s) 47, 729, 1087, 1203, 1329, 1642
Hpy8I GTNNAC 4 cut(s) 302, 920, 1433, 1807
HpyAV CCTTC 5 cut(s) 112, 274, 279, 785, 1088
HpyCH4III ACNGT 6 cut(s) 172, 520, 924, 1050, 1437, 1735
HpyCH4IV ACGT 3 cut(s) 508, 1240, 1354
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 235, 512, 1135, 1144, 1150
HpyF3I CTNAG 5 cut(s) 567, 1202, 1272, 1421, 1646
HpySE526I ACGT 3 cut(s) 508, 1240, 1354
HspAI GCGC 3 cut(s) 58, 553, 1142
Ksp22I TGATCA 1 cut(s) 1191
LmnI GCTCC 6 cut(s) 20, 865, 1120, 1150, 1628, 1703
Lsp1109I GCAGC 8 cut(s) 241, 457, 490, 550, 613, 977, 1156, 1246
LweI GCATC 5 cut(s) 69, 339, 568, 751, 1583
MaeI CTAG 4 cut(s) 860, 1344, 1635, 1694
MaeII ACGT 3 cut(s) 508, 1240, 1354
MaeIII GTNAC 3 cut(s) 418, 682, 1236
MboII GAAGA 7 cut(s) 200, 286, 848, 1039, 1342, 1376, 1457
MfeI CAATTG 1 cut(s) 971
MflI RGATCY 3 cut(s) 633, 716, 995
MhlI GDGCHC 1 cut(s) 1537
MlyI GAGTC 1 cut(s) 98
Mph1103I ATGCAT 1 cut(s) 1576
MroXI GAANNNNTTC 1 cut(s) 1689
MseI TTAA 4 cut(s) 353, 533, 608, 782
MslI CAYNNNNRTG 1 cut(s) 1528
MspA1I CMGCKG 1 cut(s) 1147
MspI CCGG 3 cut(s) 18, 265, 737
MspR9I CCNGG 2 cut(s) 410, 1496
MunI CAATTG 1 cut(s) 971
MvaI CCWGG 2 cut(s) 410, 1496
MvnI CGCG 2 cut(s) 58, 60
MwoI GCNNNNNNNGC 6 cut(s) 79, 235, 512, 1135, 1144, 1150
NdeI CATATG 1 cut(s) 757
NlaIV GGNNCC 3 cut(s) 816, 1535, 1699
NmuCI GTSAC 1 cut(s) 682
NsbI TGCGCA 1 cut(s) 1143
NsiI ATGCAT 1 cut(s) 1576
NspI RCATGY 1 cut(s) 1574
NspV TTCGAA 1 cut(s) 311
PaeI GCATGC 1 cut(s) 1574
PagI TCATGA 2 cut(s) 772, 1000
PdmI GAANNNNTTC 1 cut(s) 1689
PfeI GAWTC 3 cut(s) 467, 689, 1252
PflMI CCANNNNNTGG 1 cut(s) 1052
PinAI ACCGGT 1 cut(s) 736
PkrI GCNGC 8 cut(s) 231, 447, 505, 565, 628, 967, 1146, 1261
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 408, 1494
PspFI CCCAGC 2 cut(s) 629, 1536
PspGI CCWGG 2 cut(s) 408, 1494
PspN4I GGNNCC 3 cut(s) 816, 1535, 1699
PspOMI GGGCCC 1 cut(s) 1533
PspPI GGNCC 2 cut(s) 1533, 1534
PsuI RGATCY 3 cut(s) 633, 716, 995
PvuII CAGCTG 1 cut(s) 1147
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 1528
SaqAI TTAA 4 cut(s) 353, 533, 608, 782
SatI GCNGC 8 cut(s) 230, 446, 504, 564, 627, 966, 1145, 1260
Sau96I GGNCC 2 cut(s) 1533, 1534
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 410, 1496
SduI GDGCHC 1 cut(s) 1537
SfaNI GCATC 5 cut(s) 69, 339, 568, 751, 1583
SfcI CTRYAG 2 cut(s) 183, 399
SfuI TTCGAA 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 1528
SmlI CTYRAG 4 cut(s) 809, 884, 1022, 1035
SmoI CTYRAG 4 cut(s) 809, 884, 1022, 1035
SphI GCATGC 1 cut(s) 1574
SsiI CCGC 3 cut(s) 21, 1175, 1626
SspI AATATT 1 cut(s) 1821
SspMI CTAG 4 cut(s) 860, 1344, 1635, 1694
StyD4I CCNGG 2 cut(s) 408, 1494
StyI CCWWGG 1 cut(s) 1440
TaaI ACNGT 6 cut(s) 172, 520, 924, 1050, 1437, 1735
TaiI ACGT 3 cut(s) 511, 1243, 1357
TaqI TCGA 3 cut(s) 311, 1132, 1382
TaqII GACCGA 1 cut(s) 78
TfiI GAWTC 3 cut(s) 467, 689, 1252
Tru1I TTAA 4 cut(s) 353, 533, 608, 782
Tru9I TTAA 4 cut(s) 353, 533, 608, 782
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 682
TseI GCWGC 8 cut(s) 229, 445, 503, 563, 626, 965, 1144, 1259
Tsp45I GTSAC 1 cut(s) 682
TspGWI ACGGA 1 cut(s) 1534
TspRI CASTG 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 1052
XapI RAATTY 8 cut(s) 40, 382, 539, 673, 979, 1196, 1277, 1303
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 1 cut(s) 1574
XmnI GAANNNNTTC 1 cut(s) 1689
XspI CTAG 4 cut(s) 860, 1344, 1635, 1694
Zsp2I ATGCAT 1 cut(s) 1576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.