Prupe.5G080200_v2.0.a1

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
9381145 .. 9390295
9151 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G080200.2

Sequence Viewer

Length: 1995 bp
ATGTCGTTCTCCGACTCCGATTCGTCGTCCTATGGCGGCGACTACAAGAATTTCAAGCAAATCAGCCGTGACCGATTATTGATTGAAATGCTTCGGTCCTGCAAAACGGGGGACTCAAAAGCAACCTGGAAGGTACTTATTATGGACAAACTTACTGTTAAGATAATGTCTTACGCGTGCAAAATGGCTGATATTACAGACGAAGGCGTTTCATTGGTTGAAGACATATATAGGCGAAGACAGCCATTGCCCTCCATGGATGCCATATACTTCTTCCAGCCTACCAAAGAAAATGTGATCATGTTCTTGTCCGACATGTCTGGAAGAGCACCATTATACAGGAAGGCATTTGTTTTCTTCAGCTCCCCTATTTCAAAAGAATTGGTTGGTCACATCAAGAAGGATGCAACTGTTTTAACTCGCATAGCTGCATTGAGAGAGATGAATTTGGAATATTTTGCTATAGACAGCCAGGCTTTTGTCACCAACAATGAGAGGGCTTTAGAGGAACTTTATGGGGATGAGGAGGATTCACGCAAAGGAGTTGCATGTTTGAATGTGATGGCCGCTCGTGTTGCCACAGTTTTTGCTTCGTTAAGGGAATTTCCATTTGTCCGCTATCGAGCTGCCAAGTCACTTGATGCCACCACGATGACCACATTTCGTGATTTAATTCCTACAAAGCTTGCTGCTGGGATCTGGGATTGTCTCATGAAATATAAAAAAACCATTCCGAACTTCCCTGAGACAGAAACATGCGAGTTGCTTATCCTTGACAGATCTGTAGATCAGATTGCACCTATCATACATGAATGGACATATGATGCTATGTGTCACGACTTATTAAATATGGATGGAAATAAATATGTGCATGAGGTTCCAAGTAAAACTGGTGGTCCACCTGAGAAAAAAGAGGTTCTTTTAGAGGATCATGATCCAATCTGGCTTGAGCTTCGCCATGCACATATAGCAGATGCTAGTGAAAGGTTGCATGAGAAAATGACTAATTTCATAACAAAGAATAAGGCTGCACAAATCCACCATGGTGCAAGAGATGCTCGGGAACTATCTACGAGGGACTTGCAAAAGATGGTTCAAGCATTGCCGCAATACAGTGAACAAATTGACAAGCTATCCCTTCATGTTGAGATTGCAGGGAAAGTTAACAGAATTATCCGGGAGCTTGGGCTTCGAGAACTTGGACAGCTGGAGCAGGATCTTGTTTTTGGAGATGCAGGAATGAAAGATGTGATCAAATTTTTGAATACAAAAGATGATACGACTGGTGAAAATAAGTTGCGGTTGTTGATGATTCTTGCAGCCATTTATCCTGAGAAATTTGAGGGTGAGAAGGGTCACAATTTGATGAAGTTAGCAAAATTACCACCCGATGATATGAATGCTGTGAATAATATGAGATTGCTTGGGGGATCATCAGATACCAAAAAAAGCTCAATAGCCACTTTTTCTCTGAAGTTTGATATGCATAAGAAGAAACGTGGAGGTAGGAAAGAACGTCCAAGTGAAGGAGAAACATGGCAGCTTTCGCGTTTTTATCCCATCATAGAGGAACTTGTAGAAAACCTTAGCAAAGGTGAACTGTCTAAGGAGGATTATCCATGTTTAAATGACCCAAGTCCAACTTTTCACGGGACATCACATGGTGCAGCAATACATCAACCTCCAGTTGCTCATTCAATGAGATCAAGACGGGCACCAACATGGGCACGGCCGAAGAATTCCGATGATGGGTATTCAAGTGATTCAGTATTAAGGCATGCTTCTAGTGATTTCAAGAAGATGGGACAACGCATATTTGTAGTTATAGTAGGTGGAGCCACTAGATCAGAGCTTAGGGTTTGCCACAAGCTCACAACTAAGCTGAGGAGGGAAGTTGTTCTAGGCTCCTCATGTCTTGACGATCCTGCACCTTTTATTACGAAACTAAAAATGATGACGGCAAACGAGCTCTCATTGGATGATCTCCAGATTTGA

Protein Analysis

665

Amino Acids

75.24

Weight (kDa)

7.94

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1714
AccBSI CCGCTC 1 cut(s) 569
AccII CGCG 2 cut(s) 176, 1549
AciI CCGC 5 cut(s) 36, 567, 616, 1106, 1300
AclWI GGATC 6 cut(s) 704, 929, 936, 1224, 1438, 1916
AcoI YGGCCR 2 cut(s) 564, 1730
AcsI RAATTY 6 cut(s) 49, 445, 602, 1256, 1337, 1738
AcuI CTGAAG 2 cut(s) 343, 1493
AdeI CACNNNGTG 1 cut(s) 1664
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 1526, 1749
AflIII ACRYGT 2 cut(s) 174, 315
AjnI CCWGG 2 cut(s) 125, 471
AleI CACNNNNGTG 1 cut(s) 1044
Alw21I GWGCWC 2 cut(s) 331, 1971
Alw26I GTCTC 2 cut(s) 713, 740
AlwI GGATC 6 cut(s) 704, 929, 936, 1224, 1438, 1916
Ama87I CYCGRG 1 cut(s) 1059
AoxI GGCC 2 cut(s) 564, 1730
ApeKI GCWGC 7 cut(s) 428, 626, 689, 1028, 1319, 1540, 1667
ApoI RAATTY 6 cut(s) 49, 445, 602, 1256, 1337, 1738
Asp700I GAANNNNTTC 2 cut(s) 90, 1896
AspS9I GGNCC 2 cut(s) 96, 896
AsuC2I CCSGG 1 cut(s) 1178
AsuHPI GGTGA 4 cut(s) 475, 1298, 1358, 1607
AvaI CYCGRG 1 cut(s) 1059
AvaII GGWCC 2 cut(s) 96, 896
BaeGI GKGCMC 2 cut(s) 1717, 1729
BanI GGYRCC 1 cut(s) 1714
BanII GRGCYC 1 cut(s) 1971
BauI CACGAG 1 cut(s) 570
BbsI GAAGAC 2 cut(s) 228, 244
Bbv12I GWGCWC 2 cut(s) 331, 1971
BbvCI CCTCAGC 1 cut(s) 1883
BbvI GCAGC 7 cut(s) 415, 613, 676, 1015, 1331, 1552, 1679
BccI CCATC 6 cut(s) 556, 848, 1084, 1568, 1742, 1795
BceAI ACGGC 3 cut(s) 51, 1745, 1974
BcgI CGANNNNNNTGC 2 cut(s) 1063, 1097
BciT130I CCWGG 2 cut(s) 127, 473
BclI TGATCA 2 cut(s) 297, 1251
BcnI CCSGG 1 cut(s) 1178
BcoDI GTCTC 2 cut(s) 713, 740
BfaI CTAG 4 cut(s) 978, 1785, 1842, 1901
BfmI CTRYAG 2 cut(s) 462, 783
BglII AGATCT 1 cut(s) 779
Bme1390I CCNGG 3 cut(s) 127, 473, 1178
Bme18I GGWCC 2 cut(s) 96, 896
BmeT110I CYCGRG 1 cut(s) 1059
BmgT120I GGNCC 2 cut(s) 96, 896
BmiI GGNNCC 4 cut(s) 879, 1716, 1837, 1906
BmrFI CCNGG 3 cut(s) 127, 473, 1178
BmsI GCATC 7 cut(s) 250, 394, 631, 814, 964, 1045, 1222
BoxI GACNNNNGTC 1 cut(s) 1635
BpiI GAAGAC 2 cut(s) 228, 244
BpmI CTGGAG 3 cut(s) 1229, 1668, 1970
Bpu10I CCTNAGC 3 cut(s) 1586, 1853, 1883
BpuEI CTTGAG 1 cut(s) 968
BpuMI CCSGG 1 cut(s) 1178
BsaBI GATNNNNATC 1 cut(s) 933
BsaJI CCNNGG 2 cut(s) 255, 1042
Bsc4I CCNNNNNNNGG 2 cut(s) 1526, 1749
Bse1I ACTGG 3 cut(s) 895, 1288, 1685
Bse3DI GCAATG 2 cut(s) 245, 1100
Bse8I GATNNNNATC 1 cut(s) 933
BseBI CCWGG 2 cut(s) 127, 473
BseDI CCNNGG 2 cut(s) 255, 1042
BseGI GGATG 5 cut(s) 265, 409, 526, 859, 1984
BseJI GATNNNNATC 1 cut(s) 933
BseLI CCNNNNNNNGG 2 cut(s) 1526, 1749
BseMI GCAATG 2 cut(s) 245, 1100
BseMII CTCAG 4 cut(s) 735, 894, 1323, 1874
BseNI ACTGG 3 cut(s) 895, 1288, 1685
BseRI GAGGAG 3 cut(s) 539, 1897, 1900
BseSI GKGCMC 2 cut(s) 1717, 1729
BseX3I CGGCCG 1 cut(s) 1730
BseXI GCAGC 7 cut(s) 415, 613, 676, 1015, 1331, 1552, 1679
BseYI CCCAGC 1 cut(s) 692
BsgI GTGCAG 3 cut(s) 1014, 1686, 1911
Bsh1236I CGCG 2 cut(s) 176, 1549
Bsh1285I CGRYCG 1 cut(s) 1733
BshFI GGCC 2 cut(s) 566, 1732
BshNI GGYRCC 1 cut(s) 1714
BsiEI CGRYCG 1 cut(s) 1733
BsiHKAI GWGCWC 2 cut(s) 331, 1971
BsiHKCI CYCGRG 1 cut(s) 1059
BsiSI CCGG 1 cut(s) 1177
BslFI GGGAC 4 cut(s) 125, 1091, 1666, 1818
BslI CCNNNNNNNGG 2 cut(s) 1526, 1749
BsmAI GTCTC 2 cut(s) 713, 740
BsmFI GGGAC 4 cut(s) 125, 1091, 1666, 1818
BsmI GAATGC 1 cut(s) 1405
BsnI GGCC 2 cut(s) 566, 1732
BsoBI CYCGRG 1 cut(s) 1059
Bsp1286I GDGCHC 4 cut(s) 331, 1717, 1729, 1971
Bsp19I CCATGG 2 cut(s) 255, 1042
BspACI CCGC 5 cut(s) 36, 567, 616, 1106, 1300
BspANI GGCC 2 cut(s) 566, 1732
BspCNI CTCAG 4 cut(s) 736, 895, 1324, 1875
BspFNI CGCG 2 cut(s) 176, 1549
BspHI TCATGA 2 cut(s) 711, 931
BspLI GGNNCC 4 cut(s) 879, 1716, 1837, 1906
BspPI GGATC 6 cut(s) 704, 929, 936, 1224, 1438, 1916
BspQI GCTCTTC 1 cut(s) 319
BspT107I GGYRCC 1 cut(s) 1714
BsrBI CCGCTC 1 cut(s) 569
BsrDI GCAATG 2 cut(s) 245, 1100
BsrI ACTGG 3 cut(s) 895, 1288, 1685
BssECI CCNNGG 2 cut(s) 255, 1042
BssSI CACGAG 1 cut(s) 570
BssT1I CCWWGG 2 cut(s) 255, 1042
Bst2BI CACGAG 1 cut(s) 570
Bst2UI CCWGG 2 cut(s) 127, 473
Bst4CI ACNGT 5 cut(s) 157, 412, 583, 1115, 1602
Bst6I CTCTTC 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 1055
BstC8I GCNNGC 3 cut(s) 178, 687, 1779
BstDEI CTNAG 8 cut(s) 744, 903, 1332, 1586, 1605, 1853, 1878, 1883
BstDSI CCRYGG 2 cut(s) 255, 1042
BstF5I GGATG 5 cut(s) 265, 409, 526, 859, 1984
BstFNI CGCG 2 cut(s) 176, 1549
BstMAI GTCTC 2 cut(s) 713, 740
BstMCI CGRYCG 1 cut(s) 1733
BstMWI GCNNNNNNNGC 5 cut(s) 241, 575, 968, 1055, 1546
BstNI CCWGG 2 cut(s) 127, 473
BstNSI RCATGY 4 cut(s) 319, 552, 759, 1781
BstPAI GACNNNNGTC 1 cut(s) 1635
BstSCI CCNGG 3 cut(s) 125, 471, 1176
BstSFI CTRYAG 2 cut(s) 462, 783
BstSLI GKGCMC 2 cut(s) 1717, 1729
BstUI CGCG 2 cut(s) 176, 1549
BstV1I GCAGC 7 cut(s) 415, 613, 676, 1015, 1331, 1552, 1679
BstV2I GAAGAC 2 cut(s) 228, 244
BstX2I RGATCY 3 cut(s) 696, 779, 1216
BstYI RGATCY 3 cut(s) 696, 779, 1216
BstZI CGGCCG 1 cut(s) 1730
BsuRI GGCC 2 cut(s) 566, 1732
BtgI CCRYGG 2 cut(s) 255, 1042
BtsCI GGATG 5 cut(s) 265, 409, 526, 859, 1984
BtsIMutI CAGTG 1 cut(s) 1120
Cac8I GCNNGC 3 cut(s) 178, 687, 1779
CciI TCATGA 2 cut(s) 711, 931
Cfr13I GGNCC 2 cut(s) 96, 896
Csp6I GTAC 1 cut(s) 134
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 8 cut(s) 744, 903, 1332, 1586, 1605, 1853, 1878, 1883
DraI TTTAAA 1 cut(s) 1626
DraIII CACNNNGTG 1 cut(s) 1664
EaeI YGGCCR 2 cut(s) 564, 1730
EagI CGGCCG 1 cut(s) 1730
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Ecl136II GAGCTC 1 cut(s) 1969
EclXI CGGCCG 1 cut(s) 1730
Eco130I CCWWGG 2 cut(s) 255, 1042
Eco24I GRGCYC 1 cut(s) 1971
Eco47I GGWCC 2 cut(s) 96, 896
Eco52I CGGCCG 1 cut(s) 1730
Eco53kI GAGCTC 1 cut(s) 1969
Eco57I CTGAAG 2 cut(s) 343, 1493
Eco88I CYCGRG 1 cut(s) 1059
EcoICRI GAGCTC 1 cut(s) 1969
EcoRI GAATTC 1 cut(s) 1738
EcoRII CCWGG 2 cut(s) 125, 471
EcoT14I CCWWGG 2 cut(s) 255, 1042
EcoT22I ATGCAT 1 cut(s) 1488
EcoT38I GRGCYC 1 cut(s) 1971
ErhI CCWWGG 2 cut(s) 255, 1042
FalI AAGNNNNNCTT 6 cut(s) 903, 935, 1627, 1659, 1765, 1797
FaqI GGGAC 4 cut(s) 125, 1091, 1666, 1818
FauNDI CATATG 1 cut(s) 820
FbaI TGATCA 2 cut(s) 297, 1251
FokI GGATG 5 cut(s) 272, 416, 533, 866, 1991
FriOI GRGCYC 1 cut(s) 1971
FspBI CTAG 4 cut(s) 978, 1785, 1842, 1901
GsaI CCCAGC 1 cut(s) 696
GsuI CTGGAG 3 cut(s) 1229, 1668, 1970
HaeIII GGCC 2 cut(s) 566, 1732
HapII CCGG 1 cut(s) 1177
HincII GTYRAC 1 cut(s) 1165
HindII GTYRAC 1 cut(s) 1165
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 6 cut(s) 14, 20, 113, 530, 1312, 1763
HpaI GTTAAC 1 cut(s) 1165
HpaII CCGG 1 cut(s) 1177
HphI GGTGA 4 cut(s) 475, 1298, 1358, 1607
Hpy166II GTNNAC 4 cut(s) 899, 1118, 1165, 1598
Hpy188I TCNGA 9 cut(s) 13, 19, 313, 735, 792, 1438, 1473, 1744, 1849
Hpy8I GTNNAC 4 cut(s) 899, 1118, 1165, 1598
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 7 cut(s) 124, 197, 337, 394, 1148, 1345, 1520
HpyCH4III ACNGT 5 cut(s) 157, 412, 583, 1115, 1602
HpyCH4IV ACGT 2 cut(s) 1498, 1516
HpyF10VI GCNNNNNNNGC 5 cut(s) 241, 575, 968, 1055, 1546
HpyF3I CTNAG 8 cut(s) 744, 903, 1332, 1586, 1605, 1853, 1878, 1883
HpySE526I ACGT 2 cut(s) 1498, 1516
Ksp22I TGATCA 2 cut(s) 297, 1251
KspAI GTTAAC 1 cut(s) 1165
LguI GCTCTTC 1 cut(s) 319
LmnI GCTCC 5 cut(s) 368, 1180, 1210, 1835, 1910
Lsp1109I GCAGC 7 cut(s) 415, 613, 676, 1015, 1331, 1552, 1679
LweI GCATC 7 cut(s) 250, 394, 631, 814, 964, 1045, 1222
MaeI CTAG 4 cut(s) 978, 1785, 1842, 1901
MaeII ACGT 2 cut(s) 1498, 1516
MaeIII GTNAC 6 cut(s) 68, 389, 481, 633, 833, 1355
MbiI CCGCTC 1 cut(s) 569
MboII GAAGA 8 cut(s) 233, 249, 265, 336, 349, 1504, 1747, 1810
MflI RGATCY 3 cut(s) 696, 779, 1216
MhlI GDGCHC 4 cut(s) 331, 1717, 1729, 1971
MluI ACGCGT 1 cut(s) 174
MlyI GAGTC 2 cut(s) 8, 107
MmeI TCCRAC 3 cut(s) 36, 336, 1664
Mph1103I ATGCAT 1 cut(s) 1488
MroXI GAANNNNTTC 2 cut(s) 90, 1896
MseI TTAA 8 cut(s) 159, 416, 596, 671, 845, 1164, 1625, 1772
MslI CAYNNNNRTG 3 cut(s) 650, 1044, 1720
MspA1I CMGCKG 1 cut(s) 1207
MspI CCGG 1 cut(s) 1177
MspR9I CCNGG 3 cut(s) 127, 473, 1178
Mva1269I GAATGC 1 cut(s) 1405
MvaI CCWGG 2 cut(s) 127, 473
MvnI CGCG 2 cut(s) 176, 1549
MwoI GCNNNNNNNGC 5 cut(s) 241, 575, 968, 1055, 1546
NciI CCSGG 1 cut(s) 1178
NcoI CCATGG 2 cut(s) 255, 1042
NdeI CATATG 1 cut(s) 820
NlaIV GGNNCC 4 cut(s) 879, 1716, 1837, 1906
NmuCI GTSAC 6 cut(s) 68, 389, 481, 633, 833, 1355
NsiI ATGCAT 1 cut(s) 1488
NspI RCATGY 4 cut(s) 319, 552, 759, 1781
OliI CACNNNNGTG 1 cut(s) 1044
PaeI GCATGC 1 cut(s) 1781
PagI TCATGA 2 cut(s) 711, 931
PciI ACATGT 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 319
PctI GAATGC 1 cut(s) 1405
PdmI GAANNNNTTC 2 cut(s) 90, 1896
PfeI GAWTC 4 cut(s) 20, 530, 1312, 1763
PfoI TCCNGGA 1 cut(s) 1176
PleI GAGTC 2 cut(s) 8, 107
PpsI GAGTC 2 cut(s) 8, 107
PscI ACATGT 1 cut(s) 315
PshAI GACNNNNGTC 1 cut(s) 1635
Psp124BI GAGCTC 1 cut(s) 1971
Psp6I CCWGG 2 cut(s) 125, 471
PspFI CCCAGC 1 cut(s) 692
PspGI CCWGG 2 cut(s) 125, 471
PspN4I GGNNCC 4 cut(s) 879, 1716, 1837, 1906
PspPI GGNCC 2 cut(s) 96, 896
PsuI RGATCY 3 cut(s) 696, 779, 1216
PvuII CAGCTG 1 cut(s) 1207
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 3 cut(s) 650, 1044, 1720
SacI GAGCTC 1 cut(s) 1971
SapI GCTCTTC 1 cut(s) 319
SaqAI TTAA 8 cut(s) 159, 416, 596, 671, 845, 1164, 1625, 1772
Sau96I GGNCC 2 cut(s) 96, 896
SchI GAGTC 2 cut(s) 8, 107
ScrFI CCNGG 3 cut(s) 127, 473, 1178
SduI GDGCHC 4 cut(s) 331, 1717, 1729, 1971
SfaNI GCATC 7 cut(s) 250, 394, 631, 814, 964, 1045, 1222
SfcI CTRYAG 2 cut(s) 462, 783
SinI GGWCC 2 cut(s) 96, 896
SmiMI CAYNNNNRTG 3 cut(s) 650, 1044, 1720
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
SphI GCATGC 1 cut(s) 1781
SsiI CCGC 5 cut(s) 36, 567, 616, 1106, 1300
SspI AATATT 1 cut(s) 455
SspMI CTAG 4 cut(s) 978, 1785, 1842, 1901
SstI GAGCTC 1 cut(s) 1971
StyD4I CCNGG 3 cut(s) 125, 471, 1176
StyI CCWWGG 2 cut(s) 255, 1042
TaaI ACNGT 5 cut(s) 157, 412, 583, 1115, 1602
TaiI ACGT 2 cut(s) 1501, 1519
TaqI TCGA 2 cut(s) 622, 1192
TaqII GACCGA 2 cut(s) 84, 87
TauI GCSGC 3 cut(s) 39, 569, 1108
TfiI GAWTC 4 cut(s) 20, 530, 1312, 1763
Tru1I TTAA 8 cut(s) 159, 416, 596, 671, 845, 1164, 1625, 1772
Tru9I TTAA 8 cut(s) 159, 416, 596, 671, 845, 1164, 1625, 1772
TscAI CASTG 1 cut(s) 1120
TseFI GTSAC 6 cut(s) 68, 389, 481, 633, 833, 1355
TseI GCWGC 7 cut(s) 428, 626, 689, 1028, 1319, 1540, 1667
Tsp45I GTSAC 6 cut(s) 68, 389, 481, 633, 833, 1355
TspDTI ATGAA 9 cut(s) 201, 458, 728, 825, 1000, 1130, 1256, 1382, 1412
TspRI CASTG 1 cut(s) 1120
VpaK11BI GGWCC 2 cut(s) 96, 896
XapI RAATTY 6 cut(s) 49, 445, 602, 1256, 1337, 1738
XceI RCATGY 4 cut(s) 319, 552, 759, 1781
XmnI GAANNNNTTC 2 cut(s) 90, 1896
XspI CTAG 4 cut(s) 978, 1785, 1842, 1901
Zsp2I ATGCAT 1 cut(s) 1488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.