Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001124

Physical Location & Seq

Genomic Coordinates Reverse (-)

16160419 .. 16164482

Gene Structure 4064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3372 bp

ATGGGAACCATGAGATCATTTCTAGCTTACCTTCTTTTGTATGTTCAGCTCGTTTCATCACCAAACAATGCTTTTGCTTCTGCTAGTTCTAGTTCTAGTGAAGCAGAGGCTCTCTTCAAATGGAAAGCCAGCTTTTTAAACCAAACCCAAAATAATAATCTGACCTCCTGGACTTACTTTCCCAGCAATTCCACCAATCCAAAAGCAAAAGGAAGCCCATGCAACGTTTGGACTGGCATTTCATGCAACACTGCTGGAAGTGTCAACAAGATAAACCTCACCAGTTATGGTATACAAGGTACGCTGCATGAATTTCCATTCCTGTCCTTACCCAATCTTGAAAATATTGACCTCAGTTGGAATGAATTCTTTGACGGCATCCCACCTCAGATTAGTTCCCTCTCCAAACTCATCTTTTTTGATCTATCTTATAATAAGTTGTCTGGGAAAATTCCACCAGAAATTGGTCTTCTCACAAATCTTGTTGTCTTGCACCTACATGAAAACCAGTTAAATGGTTCAATTCCTCAAGAGATAGGTCAGCTCAAGTTTCTTTACGAGCTTACTCTTTACCACAACCATCTAGAAGGTCCAATTCCTTCTTCTCTAGGTAGCTTGAGCAACCTGATTACTTTGTATCTCTATGACAATCAACTTTCTGGTTCCATTCCTCCAGAGATAGGAAACCTTTCTAGTTTGGTTGACATGGTAATGGATAAAAACCATTTAACAGGTCCAATCCCTCCCAATTTTGGAAGCTTAAAAAACCTGGCATATTTGTATCTCCAAGACAATCAACTTTCTGGTTCCATTCCTCCAGAGATGGGAAACCTTTCAAGTTTGGTTGAAATGGAAATGGCTCAAAACCACATAACAGGTCTGATCCCTCCAAGTTTTGGAAGCTTAAAAAACCTGACATATTTGGGTCTCTACGACAATAAACTTTCTAGTTCCATTCCTCTCGAGATAGGAAACCTTTCAAATTTGGTTGAAATAGGAATGGGTAAAAACCATTTAACAGGTCCAATCCCTCCAAATTTTGGAAGCTTAAGAAACCTAACGCTGTTATACTTGAACTTGAACAATCTTTCTGGTTCAATCCCAACATCTTTAGGTGATCTGAGAAACCTTAAGCTTCTCTATCTTTATGGAAATCAACTTTCTGGCACTATTCCAAAAGAGATAGGTAACTTGAAATCTATGGTAGATTTACAGTTGAGCAGAAATCAACTTAGTGGCTCCATTCCTACATCATTTGGTGAGTTGAGAAACTTAGAAACCTTATTCCTTCGTGAAAACCAACTATCTGGATCCATTCCTGAGCAGATTGGGAATCTCATGAAATTGAATATACTGACATTGGATAGTAACCAATTTTCTGGTTATTTGCCCCAAAATATATGTGGGGGCGGATTACTAGAAAACTTCACAGTATACAACAACCATTTGATAGGTCCCCTCCCCAAAAGCTTGAAAACTTGCAAGAGCTTAGTTAGATTCCAACTTCATGGGAACCATCTGACGGGAAATATATCTGAAGAATTTGGTGCCTATCCAAATCTTCAATATATAGACCTAAGCCACAACAACTTCTACGGTGAAATCTCACCTGTCTGGGGGGAATGTTCACGATTAGGAACTCTCCGGTTTGCCGGAAACAACCTGACTGGTAGCATCCCACCTGAGATTGGCAATGCAACCCAAATTCATGTACTGGATCTTTCTTCAAATGGTTTAGTTGGTGTGGTTCCAAATGAGATTGGGAGATTAACTTCTTTGGAGAAGCTGATTTTGAATGGTAATCAACTTTGGGGTCGGATACCCCCAGAATTTAGATCATTGAAGGATCTTGAGTATCTTGACCTGTCAACGAACAAATTCAATGAGTCAATTCCAAGCACTTTAGGTGACTTGTCCAGTTTACACTACTTGAATTTGAGCAACAACCAGTTCAGCAAAAAAATTCCATTTCAATTGGGGAATTTAGTCCACCTGTCCCAGCTAGACTTAAGTCATAATTCACTGGACCATCAGATACCATCAGAAATGAGCCAAATGCAAAGCTTAGAGATTCTGAATCTTTCCCACAATAATCTTTCTGGTTCCATACCCAAAAATTTTGAACAAATGCATAGCTGGGTTCAAATCGACATATCCTACAACCAGTTGCAGGGTCCCGTCCCCAATAGCAAAGCATTTCAAGATGCTCTTTTGGAAGGCAATGAAGGATTGTGTGGCAATATTGGAGGACTTCAACCTTGCCCTTCCATGGAAAATAAGCATGCCACAAAAAAGAATCGAAGACTCATGTTTATAATTGTTTTCCCTGTTCTGGGGATACTTTTACTTTTACTTGCCTTCCTTGGAATTGCCTTCGTTAGAAAAAGAAGAAGAAACAAAGAGCAGGATACAGAGCAGAGCAATGTGGAGCAAAAAGAAGTCTTTTCCATATCTGAGTTTGATGGAAGAAGAATGTATGACAAAATCATCAAGGCAACCAATAATTTTGATGATGTATATTGCATCGGAAAGGGAGGATCCGGAAGTGTCTACAAGGCAGAGCTGCTGTCAGGTAGCATAGTTGCAGTGAAGAAACTCCACCCAATACTTGATGGTGAGGAGTCGTCTTGGAAGGAATTCCTTAATGAAATAAGGGCACTAATAGAGATACGGCACCGGAACATTGTGAAACTTCGTGGTTTCTGTTCACATGCCCATCACTCGTTTTTGGTCTATGACTACCTAGAATATGGTAGCTTGGCTTCAATCTTGAGCAAAGAATATGAAGCTCAAAAGCTGGACTGGAGCACAAGGGTGAGGATTGTGAAAGGTGTAGCTCATGCCTTGTCTTATATGCATCATGATTGCTCACCACCTATAGTGCATCGGGACATATCAAGCAACAACATTTTGCTCAATTACGAATATGAGCCTTGTGTTTCAGACTTTGGCACCGCTAAGCTTCTAAATGCAGACTCATCGAATTGGACTGCCCGTGCAGGCACATATGGATATATAGCACCAGAGCTGGCTTACACAATGAAGGTAACTGAGAAATGCGATGTCTATAGCTTTGGGGTGTTGGCACTGGAAGTCATAATGGGGAAGCGGCTGGGTGAAATCATCTCATCATTTTCGTCTCCATCCGCCAACGAAGACAAATTGTTGAAGGATGTATTGGACCAACGCCTCCCGGCTCCAACACCTCATGTTCAAGATGAATTGGTAACCATTGCAAGCCTAGCAATTGCATGCAAACATCCCCATCCACAATCCAGGCCAACAATGCACGGGGTTTCTCAGGTCTTATCATCCCACCCTGCAAGTTCCTCAGGACAACCAGAGATTACACTTGCGCAACTCATTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0016020 GO:0019898 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 map04721

Pfam Domains

Protein Families

Sec1

Protein Analysis

1123

Amino Acids

124.17

Weight (kDa)

6.15

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	124 - 213	2.9e-07	Leucine-rich repeat region
LRR_14	PF23598	174 - 236	1.7e-06	Leucine-rich repeat region
LRR_14	PF23598	250 - 361	3.6e-07	Leucine-rich repeat region
LRR_14	PF23598	299 - 382	5.5e-06	Leucine-rich repeat region
LRR_14	PF23598	347 - 454	7.8e-10	Leucine-rich repeat region
LRR_8	PF13855	403 - 459	1e-06	Leucine rich repeat
LRR_14	PF23598	544 - 641	2.9e-06	Leucine-rich repeat region
LRR_4	PF12799	591 - 631	3e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	611 - 651	1.1e-06	Leucine rich repeat
LRR_14	PF23598	634 - 712	8.4e-08	Leucine-rich repeat region
LRR_8	PF13855	664 - 723	9.9e-08	Leucine rich repeat
Pkinase	PF00069	841 - 1099	1.2e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	842 - 1101	2.7e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12360 AT4G12120
fragaria_vesca	FvH4_2g27020 FvH4_2g27020 FvH4_2g27020 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992
malus_domestica	MD04G1079000.v1.1 MD06G1073800.v1.1
prunus_persica	Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1
pyrus_communis	pycom04g07080 pycom06g05270
rosa_chinensis	RchiOBHm_Chr5g0038751 RchiOBHm_Chr6g0295901 RchiOBHm_Chr7g0201411
rosa_laevigata	RLG00000003677 RLG00000011758 RLG00000033865
rosa_multiflora	Rmu_sc0001469.1_g000008 Rmu_sc0005722.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042410 Rroxscaffold_3G00255300 Rroxscaffold_7G00172070
rosa_rugosa	Rorug05G0173300.1 Rorug05G0173400 Rorug05G0173500 Rorug06G0255000 Rorug06G0255000 Rorug07G0063400 Rorug07G0063500
rosa_samantha	Rh5AG260700 Rh5BG264400 Rh5CG297100 Rh5DG272800 Rh6AG368700 Rh6BG376400 Rh6CG382600 Rh6DG369200 Rh7AG190300 Rh7BG192700 Rh7CG201800 Rh7DG195300
rosa_wichuraiana	Rw5G024070 Rw5G024360 Rw6G032150 Rw7G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	432, 2315
Acc16I	TGCGCA	1 cut(s)	3357
AccB1I	GGYRCC	3 cut(s)	1547, 2673, 2951
AccB7I	CCANNNNNTGG	3 cut(s)	464, 896, 1040
AccI	GTMKAC	3 cut(s)	292, 1434, 2550
AccIII	TCCGGA	1 cut(s)	2540
AciI	CCGC	4 cut(s)	1410, 2955, 3109, 3147
AclI	AACGTT	1 cut(s)	225
AclWI	GGATC	7 cut(s)	877, 1305, 1318, 1725, 1854, 2532, 2545
AcuI	CTGAAG	1 cut(s)	1557
AfaI	GTAC	2 cut(s)	301, 1713
AflII	CTTAAG	3 cut(s)	1048, 1130, 2008
AjnI	CCWGG	3 cut(s)	167, 768, 3275
AjuI	GAANNNNNNNTTGG	4 cut(s)	586, 618, 3161, 3193
AleI	CACNNNNGTG	1 cut(s)	2813
Alw21I	GWGCWC	1 cut(s)	2810
Alw26I	GTCTC	2 cut(s)	932, 3144
AlwI	GGATC	7 cut(s)	877, 1305, 1318, 1725, 1854, 2532, 2545
Ama87I	CYCGRG	1 cut(s)	962
Aor13HI	TCCGGA	1 cut(s)	2540
AoxI	GGCC	1 cut(s)	3278
ApeKI	GCWGC	2 cut(s)	304, 2563
Asp700I	GAANNNNTTC	6 cut(s)	365, 688, 832, 976, 1877, 2636
AspLEI	GCGC	1 cut(s)	3358
AspS9I	GGNCC	7 cut(s)	590, 734, 1022, 1454, 2026, 2174, 3181
AsuC2I	CCSGG	1 cut(s)	3194
AvaI	CYCGRG	1 cut(s)	962
AvaII	GGWCC	7 cut(s)	590, 734, 1022, 1454, 2026, 2174, 3181
AxyI	CCTNAGG	1 cut(s)	3331
BaeGI	GKGCMC	1 cut(s)	2659
BamHI	GGATCC	2 cut(s)	1310, 2537
BanI	GGYRCC	3 cut(s)	1547, 2673, 2951
BarI	GAAGNNNNNNTAC	2 cut(s)	2746, 2778
BbsI	GAAGAC	3 cut(s)	461, 2308, 3162
Bbv12I	GWGCWC	1 cut(s)	2810
BbvI	GCAGC	2 cut(s)	291, 2550
BceAI	ACGGC	2 cut(s)	391, 2687
BcgI	CGANNNNNNTGC	2 cut(s)	2961, 2995
BciT130I	CCWGG	3 cut(s)	169, 770, 3277
BciVI	GTATCC	3 cut(s)	1812, 2331, 2401
BcnI	CCSGG	1 cut(s)	3194
BcoDI	GTCTC	2 cut(s)	932, 3144
BfmI	CTRYAG	2 cut(s)	2877, 3067
BfrI	CTTAAG	3 cut(s)	1048, 1130, 2008
BfuI	GTATCC	3 cut(s)	1812, 2331, 2401
BisI	GCNGC	3 cut(s)	305, 2564, 3110
BlpI	GCTNAGC	1 cut(s)	2958
BlsI	GCNGC	3 cut(s)	306, 2565, 3111
Bme1390I	CCNGG	4 cut(s)	169, 770, 3194, 3277
Bme18I	GGWCC	7 cut(s)	590, 734, 1022, 1454, 2026, 2174, 3181
BmeT110I	CYCGRG	1 cut(s)	962
BmgT120I	GGNCC	7 cut(s)	590, 734, 1022, 1454, 2026, 2174, 3181
BmrFI	CCNGG	4 cut(s)	169, 770, 3194, 3277
BmsI	GCATC	6 cut(s)	387, 1683, 2194, 2532, 2866, 2893
BoxI	GACNNNNGTC	1 cut(s)	2010
BpiI	GAAGAC	3 cut(s)	461, 2308, 3162
BpmI	CTGGAG	3 cut(s)	657, 801, 2824
Bpu10I	CCTNAGC	2 cut(s)	1320, 1577
Bpu1102I	GCTNAGC	1 cut(s)	2958
BpuEI	CTTGAG	5 cut(s)	513, 530, 637, 1871, 2791
BpuMI	CCSGG	1 cut(s)	3194
BsaI	GGTCTC	1 cut(s)	932
BsaJI	CCNNGG	2 cut(s)	2268, 2362
BsaWI	WCCGGW	3 cut(s)	1644, 2540, 2676
Bse21I	CCTNAGG	1 cut(s)	3331
Bse3DI	GCAATG	4 cut(s)	1699, 2227, 2428, 3231
BseAI	TCCGGA	1 cut(s)	2540
BseBI	CCWGG	3 cut(s)	169, 770, 3277
BseDI	CCNNGG	2 cut(s)	2268, 2362
BseGI	GGATG	7 cut(s)	378, 1674, 3143, 3178, 3259, 3265, 3311
BseMI	GCAATG	4 cut(s)	1699, 2227, 2428, 3231
BseMII	CTCAG	9 cut(s)	367, 401, 1112, 1311, 1674, 2445, 3042, 3314, 3345
BseRI	GAGGAG	1 cut(s)	2633
BseSI	GKGCMC	1 cut(s)	2659
BseXI	GCAGC	2 cut(s)	291, 2550
BseYI	CCCAGC	4 cut(s)	182, 1998, 2136, 3112
BsgI	GTGCAG	1 cut(s)	3018
BshFI	GGCC	1 cut(s)	3280
BshNI	GGYRCC	3 cut(s)	1547, 2673, 2951
BsiHKAI	GWGCWC	1 cut(s)	2810
BsiHKCI	CYCGRG	1 cut(s)	962
BsiSI	CCGG	5 cut(s)	1645, 1653, 2541, 2677, 3194
BslFI	GGGAC	5 cut(s)	1440, 1981, 2160, 2165, 2903
BsmAI	GTCTC	2 cut(s)	932, 3144
BsmBI	CGTCTC	1 cut(s)	3144
BsmFI	GGGAC	5 cut(s)	1440, 1981, 2160, 2165, 2903
BsnI	GGCC	1 cut(s)	3280
Bso31I	GGTCTC	1 cut(s)	932
BsoBI	CYCGRG	1 cut(s)	962
Bsp1286I	GDGCHC	2 cut(s)	2659, 2810
Bsp13I	TCCGGA	1 cut(s)	2540
Bsp143I	GATC	9 cut(s)	14, 421, 882, 1117, 1310, 1717, 1835, 1846, 2537
Bsp1720I	GCTNAGC	1 cut(s)	2958
Bsp19I	CCATGG	1 cut(s)	2268
BspACI	CCGC	4 cut(s)	1410, 2955, 3109, 3147
BspANI	GGCC	1 cut(s)	3280
BspCNI	CTCAG	9 cut(s)	366, 400, 1113, 1312, 1675, 2446, 3043, 3313, 3344
BspEI	TCCGGA	1 cut(s)	2540
BspHI	TCATGA	2 cut(s)	1338, 2860
BspPI	GGATC	7 cut(s)	877, 1305, 1318, 1725, 1854, 2532, 2545
BspT107I	GGYRCC	3 cut(s)	1547, 2673, 2951
BspTI	CTTAAG	3 cut(s)	1048, 1130, 2008
BspTNI	GGTCTC	1 cut(s)	932
BsrDI	GCAATG	4 cut(s)	1699, 2227, 2428, 3231
BssECI	CCNNGG	2 cut(s)	2268, 2362
BssMI	GATC	9 cut(s)	14, 421, 882, 1117, 1310, 1717, 1835, 1846, 2537
BssNAI	GTATAC	2 cut(s)	293, 1435
BssT1I	CCWWGG	2 cut(s)	2268, 2362
Bst1107I	GTATAC	2 cut(s)	293, 1435
Bst2UI	CCWGG	3 cut(s)	169, 770, 3277
Bst4CI	ACNGT	3 cut(s)	1215, 1432, 1598
Bst6I	CTCTTC	1 cut(s)	119
BstAFI	CTTAAG	3 cut(s)	1048, 1130, 2008
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstC8I	GCNNGC	6 cut(s)	130, 2283, 3001, 3030, 3238, 3253
BstDSI	CCRYGG	1 cut(s)	2268
BstEII	GGTNACC	1 cut(s)	3226
BstF5I	GGATG	7 cut(s)	378, 1674, 3143, 3178, 3259, 3265, 3311
BstHHI	GCGC	1 cut(s)	3358
BstKTI	GATC	9 cut(s)	17, 424, 885, 1120, 1313, 1720, 1838, 1849, 2540
BstMAI	GTCTC	2 cut(s)	932, 3144
BstMBI	GATC	9 cut(s)	14, 421, 882, 1117, 1310, 1717, 1835, 1846, 2537
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 3242, 3286
BstNI	CCWGG	3 cut(s)	169, 770, 3277
BstNSI	RCATGY	3 cut(s)	2285, 2714, 3255
BstPAI	GACNNNNGTC	1 cut(s)	2010
BstPI	GGTNACC	1 cut(s)	3226
BstSCI	CCNGG	4 cut(s)	167, 768, 3192, 3275
BstSFI	CTRYAG	2 cut(s)	2877, 3067
BstSLI	GKGCMC	1 cut(s)	2659
BstV1I	GCAGC	2 cut(s)	291, 2550
BstV2I	GAAGAC	3 cut(s)	461, 2308, 3162
BstX2I	RGATCY	4 cut(s)	1310, 1717, 1846, 2537
BstXI	CCANNNNNNTGG	4 cut(s)	515, 1307, 1379, 1508
BstYI	RGATCY	4 cut(s)	1310, 1717, 1846, 2537
BstZ17I	GTATAC	2 cut(s)	293, 1435
Bsu36I	CCTNAGG	1 cut(s)	3331
BsuI	GTATCC	3 cut(s)	1812, 2331, 2401
BsuRI	GGCC	1 cut(s)	3280
BtgI	CCRYGG	1 cut(s)	2268
BtgZI	GCGATG	1 cut(s)	3075
BtsCI	GGATG	7 cut(s)	378, 1674, 3143, 3178, 3259, 3265, 3311
BtsI	GCAGTG	2 cut(s)	249, 2592
BtsIMutI	CAGTG	4 cut(s)	249, 2021, 2592, 3086
Cac8I	GCNNGC	6 cut(s)	130, 2283, 3001, 3030, 3238, 3253
CciI	TCATGA	2 cut(s)	1338, 2860
CfoI	GCGC	1 cut(s)	3358
Cfr13I	GGNCC	7 cut(s)	590, 734, 1022, 1454, 2026, 2174, 3181
Csp6I	GTAC	2 cut(s)	300, 1712
CviQI	GTAC	2 cut(s)	300, 1712
DpnI	GATC	9 cut(s)	16, 423, 884, 1119, 1312, 1719, 1837, 1848, 2539
DpnII	GATC	9 cut(s)	14, 421, 882, 1117, 1310, 1717, 1835, 1846, 2537
DraI	TTTAAA	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	2 cut(s)	1425, 3136
Eco130I	CCWWGG	2 cut(s)	2268, 2362
Eco31I	GGTCTC	1 cut(s)	932
Eco47I	GGWCC	7 cut(s)	590, 734, 1022, 1454, 2026, 2174, 3181
Eco57I	CTGAAG	1 cut(s)	1557
Eco81I	CCTNAGG	1 cut(s)	3331
Eco88I	CYCGRG	1 cut(s)	962
Eco91I	GGTNACC	1 cut(s)	3226
EcoO109I	RGGNCCY	2 cut(s)	1454, 2174
EcoO65I	GGTNACC	1 cut(s)	3226
EcoRI	GAATTC	2 cut(s)	365, 2636
EcoRII	CCWGG	3 cut(s)	167, 768, 3275
EcoT14I	CCWWGG	2 cut(s)	2268, 2362
EcoT22I	ATGCAT	2 cut(s)	2133, 2859
ErhI	CCWWGG	2 cut(s)	2268, 2362
Esp3I	CGTCTC	1 cut(s)	3144
FalI	AAGNNNNNCTT	2 cut(s)	2193, 2225
FaqI	GGGAC	5 cut(s)	1440, 1981, 2160, 2165, 2903
FauNDI	CATATG	1 cut(s)	3007
FblI	GTMKAC	3 cut(s)	292, 1434, 2550
Fnu4HI	GCNGC	3 cut(s)	305, 2564, 3110
FokI	GGATG	7 cut(s)	365, 1661, 3130, 3185, 3246, 3252, 3298
Fsp4HI	GCNGC	3 cut(s)	305, 2564, 3110
FspI	TGCGCA	1 cut(s)	3357
GlaI	GCGC	1 cut(s)	3357
GluI	GCNGC	3 cut(s)	305, 2564, 3110
GsaI	CCCAGC	4 cut(s)	186, 2002, 2140, 3116
GsuI	CTGGAG	3 cut(s)	657, 801, 2824
HaeIII	GGCC	1 cut(s)	3280
HapII	CCGG	5 cut(s)	1645, 1653, 2541, 2677, 3194
HhaI	GCGC	1 cut(s)	3358
Hin6I	GCGC	1 cut(s)	3356
HinP1I	GCGC	1 cut(s)	3356
HincII	GTYRAC	3 cut(s)	265, 703, 1869
HindII	GTYRAC	3 cut(s)	265, 703, 1869
HindIII	AAGCTT	7 cut(s)	757, 901, 1045, 1133, 1468, 2062, 2960
HinfI	GANTC	9 cut(s)	1333, 1497, 1886, 2071, 2077, 2296, 2304, 2621, 2975
HpaII	CCGG	5 cut(s)	1645, 1653, 2541, 2677, 3194
HpyCH4III	ACNGT	3 cut(s)	1215, 1432, 1598
HpyCH4IV	ACGT	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 3242, 3286
HpySE526I	ACGT	1 cut(s)	225
HspAI	GCGC	1 cut(s)	3356
KflI	GGGWCCC	1 cut(s)	2174
Kpn2I	TCCGGA	1 cut(s)	2540
Kzo9I	GATC	9 cut(s)	14, 421, 882, 1117, 1310, 1717, 1835, 1846, 2537
LmnI	GCTCC	4 cut(s)	1244, 2428, 2805, 3202
Lsp1109I	GCAGC	2 cut(s)	291, 2550
LweI	GCATC	6 cut(s)	387, 1683, 2194, 2532, 2866, 2893
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	5 cut(s)	1187, 1367, 1907, 3046, 3226
MalI	GATC	9 cut(s)	16, 423, 884, 1119, 1312, 1719, 1837, 1848, 2539
MboI	GATC	9 cut(s)	14, 421, 882, 1117, 1310, 1717, 1835, 1846, 2537
MfeI	CAATTG	2 cut(s)	1973, 3246
MflI	RGATCY	4 cut(s)	1310, 1717, 1846, 2537
MhlI	GDGCHC	2 cut(s)	2659, 2810
MlyI	GAGTC	4 cut(s)	1895, 2298, 2630, 2969
MmeI	TCCRAC	4 cut(s)	338, 1525, 1796, 3224
Mph1103I	ATGCAT	2 cut(s)	2133, 2859
MroI	TCCGGA	1 cut(s)	2540
MroXI	GAANNNNTTC	6 cut(s)	365, 688, 832, 976, 1877, 2636
MslI	CAYNNNNRTG	3 cut(s)	498, 710, 2813
MspCI	CTTAAG	3 cut(s)	1048, 1130, 2008
MspI	CCGG	5 cut(s)	1645, 1653, 2541, 2677, 3194
MspR9I	CCNGG	4 cut(s)	169, 770, 3194, 3277
MunI	CAATTG	2 cut(s)	1973, 3246
MvaI	CCWGG	3 cut(s)	169, 770, 3277
MwoI	GCNNNNNNNGC	3 cut(s)	243, 3242, 3286
NciI	CCSGG	1 cut(s)	3194
NcoI	CCATGG	1 cut(s)	2268
NdeI	CATATG	1 cut(s)	3007
NdeII	GATC	9 cut(s)	14, 421, 882, 1117, 1310, 1717, 1835, 1846, 2537
NmuCI	GTSAC	1 cut(s)	1907
NsbI	TGCGCA	1 cut(s)	3357
NsiI	ATGCAT	2 cut(s)	2133, 2859
NspI	RCATGY	3 cut(s)	2285, 2714, 3255
OliI	CACNNNNGTG	1 cut(s)	2813
PaeI	GCATGC	2 cut(s)	2285, 3255
PaeR7I	CTCGAG	1 cut(s)	962
PagI	TCATGA	2 cut(s)	1338, 2860
PdmI	GAANNNNTTC	6 cut(s)	365, 688, 832, 976, 1877, 2636
PfeI	GAWTC	5 cut(s)	1333, 1497, 2071, 2077, 2296
PflMI	CCANNNNNTGG	3 cut(s)	464, 896, 1040
PfoI	TCCNGGA	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	306, 2565, 3111
PleI	GAGTC	4 cut(s)	1894, 2298, 2629, 2969
PpsI	GAGTC	4 cut(s)	1894, 2298, 2629, 2969
PpuMI	RGGWCCY	2 cut(s)	1454, 2174
PshAI	GACNNNNGTC	1 cut(s)	2010
PsiI	TTATAA	2 cut(s)	432, 2315
Psp1406I	AACGTT	1 cut(s)	225
Psp5II	RGGWCCY	2 cut(s)	1454, 2174
Psp6I	CCWGG	3 cut(s)	167, 768, 3275
PspEI	GGTNACC	1 cut(s)	3226
PspFI	CCCAGC	4 cut(s)	182, 1998, 2136, 3112
PspGI	CCWGG	3 cut(s)	167, 768, 3275
PspPI	GGNCC	7 cut(s)	590, 734, 1022, 1454, 2026, 2174, 3181
PspPPI	RGGWCCY	2 cut(s)	1454, 2174
PsuI	RGATCY	4 cut(s)	1310, 1717, 1846, 2537
RsaI	GTAC	2 cut(s)	301, 1713
RsaNI	GTAC	2 cut(s)	300, 1712
RseI	CAYNNNNRTG	3 cut(s)	498, 710, 2813
SatI	GCNGC	3 cut(s)	305, 2564, 3110
Sau3AI	GATC	9 cut(s)	14, 421, 882, 1117, 1310, 1717, 1835, 1846, 2537
Sau96I	GGNCC	7 cut(s)	590, 734, 1022, 1454, 2026, 2174, 3181
SchI	GAGTC	4 cut(s)	1895, 2298, 2630, 2969
ScrFI	CCNGG	4 cut(s)	169, 770, 3194, 3277
SduI	GDGCHC	2 cut(s)	2659, 2810
SfaNI	GCATC	6 cut(s)	387, 1683, 2194, 2532, 2866, 2893
SfcI	CTRYAG	2 cut(s)	2877, 3067
Sfr274I	CTCGAG	1 cut(s)	962
SinI	GGWCC	7 cut(s)	590, 734, 1022, 1454, 2026, 2174, 3181
SlaI	CTCGAG	1 cut(s)	962
SmiMI	CAYNNNNRTG	3 cut(s)	498, 710, 2813
SmlI	CTYRAG	9 cut(s)	528, 545, 616, 962, 1048, 1130, 1850, 2008, 2770
SmoI	CTYRAG	9 cut(s)	528, 545, 616, 962, 1048, 1130, 1850, 2008, 2770
SphI	GCATGC	2 cut(s)	2285, 3255
SsiI	CCGC	4 cut(s)	1410, 2955, 3109, 3147
SspI	AATATT	2 cut(s)	346, 2242
StyD4I	CCNGG	4 cut(s)	167, 768, 3192, 3275
StyI	CCWWGG	2 cut(s)	2268, 2362
TaaI	ACNGT	3 cut(s)	1215, 1432, 1598
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	963, 2148, 2299, 2981
TatI	WGTACW	1 cut(s)	1711
TauI	GCSGC	1 cut(s)	3112
TfiI	GAWTC	5 cut(s)	1333, 1497, 2071, 2077, 2296
TscAI	CASTG	4 cut(s)	256, 2028, 2592, 3093
TseFI	GTSAC	1 cut(s)	1907
TseI	GCWGC	2 cut(s)	304, 2563
Tsp45I	GTSAC	1 cut(s)	1907
TspRI	CASTG	4 cut(s)	256, 2028, 2592, 3093
Van91I	CCANNNNNTGG	3 cut(s)	464, 896, 1040
Vha464I	CTTAAG	3 cut(s)	1048, 1130, 2008
VpaK11BI	GGWCC	7 cut(s)	590, 734, 1022, 1454, 2026, 2174, 3181
XbaI	TCTAGA	1 cut(s)	583
XceI	RCATGY	3 cut(s)	2285, 2714, 3255
XcmI	CCANNNNNNNNNTGG	2 cut(s)	225, 1400
XhoI	CTCGAG	1 cut(s)	962
XmiI	GTMKAC	3 cut(s)	292, 1434, 2550
XmnI	GAANNNNTTC	6 cut(s)	365, 688, 832, 976, 1877, 2636
Zsp2I	ATGCAT	2 cut(s)	2133, 2859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.