Rh6AG368700

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
56718567 .. 56729629
11063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG368700.1

Sequence Viewer

Length: 1926 bp
ATGCCGTTCTCCAGCTCCGGCGGTTCGTCATCATATAAGAATTTCAGACAAATAACGCGCGACCGATTATTGCATGAGATGCTTGGGTCTTGCAAAAGAGGGGACTCAACGCAATGGAAGGTACTTATCATGGATGAACTTACTACTACGATAATGTCTTACACTTGCACGGTCAGTGATACTACAGAAGAGGGTGTTTCATTGCTCGAACGCATAGAAAAGAAAAGGCAGCCAATGCCCCACATGGACGCAATATACTTTATCCGGCCTTCCAAAAAGAATGTTAACTTGTTCTTGTCAGACATGTCTGAAAGAGCATCATTATACAGGAAGGCATTTATTTTCTTCAGTTCACCTATTTCTAAAGATTTGGTTGGTCGCATCAAGGAGGATGGAAGTGTATTAAGTCGCATATCTGCATTGAGTGAGATGAATTTGGAGTATTTTGCTATAGACAGCCAGGTTTTTGTTACCAACAATGAGAGGGCTTTAGAGCAGCTTTATGGGGACAAGGAGGATTCATGCAAAGGTATAGCATGTTTGAATGAGATAGCTGCACGTATTGCCACAGTCTTTGCTTCTTTAAAGGAATTTCCTATTGTGCGCTACCGAGCTGCTAAGTTGCTTGATGCCACCACGATTACCACTTTTCCTGATTTAATTCCTACAAAGCTTGCTGCTGGGATCTGGGATTGTCTCATAAAATATAAAAATACAATTCCAAATTTCCCTGTGACAGAATCATGCGAGTTGCTTATCCTTGACAGATCTGTGGATCAGATTGCACCGGTCATACATGAATGGACATATGATGCCATGTGTCATGACTTGTTAAATATGGAAGGAAATAGATATCTGCTTGAGGTTCCAAGCAAAACTGGTGGTCTGGCTGACAAGAAAGGTGTTCTTCTAGAGGAGCACGATCCTGTCTGGCTTGAGTTTCGCCATGAACACATAGCAGAGGTTAGTGAACGGTTGAATGAGAAACTTACCAATTTTCTTTCAAATAATAAGGCAGCACAATTGCAGAATTCAAGTGATTGTGGATCTCATGAACGATCTACAAGGGAACTCAAGAAGATAACTCAAGCATTACCACAGTATGGCAAACAAAAGGACAGGCTTTCCCTTCATTCAGAGATTGCAAAGAAAATCCACTCAATTAGCAGGGAGCTTGGGCTTCGAGAGCTTGCGCAGCTGGAGCAAGCTCTTGTTTTTGGATATGCGGGAATGAAAGATGTCATCAAATTTCTGAGGACAAAAGATGATACAACTGGCGAAAATAAGTTACGTTTGTTGATGATTCTTGCTGCCATTTATCCTGAGAAATTTGAGGGTGAGGAGGGTCAAGAGAATTTGATGAAGTTGGCAAAATTATCACCATGTGATATGGCTGCTGTGAATAATATCAAACTGATTGGGGGATCATCAGAGAACAGAAACAGCTCATCAGGAATTTTTTTTCGGAACTTCAATCTTACCAAGAAGAATTGTGCGTCTAGGAAAGAACGTCCAAGTGAAGAAAAATGGCAGTTTTCGAGCTTTTATCCCATTATAGAGGTACTAATAGAAAAGCTTAGCAAAGGTGAACTGTCCAAGGAAGACTATCCATGTCTAAATGACCCAACCCCAACTTTACATCAATCCCCCCAGGCCCATTCAATAAGATCAAGACGGACACCGACATGGGCCCAGCGTGGGATTTCTGGAGATGGGATTTCAAGGCATGCATCCAATGATTTCAAAAAGATGGGCAAACGCATATTTGTAGTTATAGTAGGCGGAGCTACTAGATCAGAGCTTAGAGTTTGCCATAAGCTCACAGCGAAGCTGAAAAGGGAAGTTGTTCTAGGCTCCACATCTCTTGATGATCCTGCAACTTTTATTACGAAAGTAAAGATGATCACAGCAGACGATCAGCTCTAA

Protein Analysis

641

Amino Acids

72.43

Weight (kDa)

8.61

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 40 - 630 1.7e-121 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1194
AccB7I CCANNNNNTGG 1 cut(s) 1103
AccII CGCG 2 cut(s) 58, 60
AciI CCGC 3 cut(s) 21, 1226, 1782
AclWI GGATC 6 cut(s) 692, 783, 917, 1054, 1432, 1865
AcsI RAATTY 9 cut(s) 40, 433, 590, 724, 1030, 1247, 1328, 1354, 1455
AcuI CTGAAG 1 cut(s) 331
AdeI CACNNNGTG 1 cut(s) 1385
AfaI GTAC 2 cut(s) 123, 1563
AfiI CCNNNNNNNGG 2 cut(s) 1103, 1698
AflIII ACRYGT 1 cut(s) 303
AgeI ACCGGT 1 cut(s) 787
AgsI TTSAA 8 cut(s) 544, 979, 1005, 1035, 1474, 1662, 1722, 1744
AjnI CCWGG 2 cut(s) 459, 1650
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 1 cut(s) 701
AlwI GGATC 6 cut(s) 692, 783, 917, 1054, 1432, 1865
AoxI GGCC 3 cut(s) 266, 1653, 1689
ApaI GGGCCC 1 cut(s) 1693
ApeKI GCWGC 9 cut(s) 229, 496, 554, 614, 677, 1016, 1195, 1310, 1394
ApoI RAATTY 9 cut(s) 40, 433, 590, 724, 1030, 1247, 1328, 1354, 1455
AsiGI ACCGGT 1 cut(s) 787
Asp700I GAANNNNTTC 1 cut(s) 1845
AspLEI GCGC 3 cut(s) 60, 606, 1195
AspS9I GGNCC 3 cut(s) 1654, 1689, 1690
AsuHPI GGTGA 4 cut(s) 345, 1349, 1371, 1598
BaeGI GKGCMC 1 cut(s) 1693
BanII GRGCYC 1 cut(s) 1693
BbsI GAAGAC 1 cut(s) 1608
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 9 cut(s) 241, 508, 541, 601, 664, 1028, 1207, 1297, 1381
BccI CCATC 3 cut(s) 386, 1706, 1744
BciT130I CCWGG 2 cut(s) 461, 1652
BclI TGATCA 1 cut(s) 1902
BcoDI GTCTC 1 cut(s) 701
BfaI CTAG 4 cut(s) 911, 1500, 1791, 1850
BfmI CTRYAG 2 cut(s) 183, 450
BglII AGATCT 1 cut(s) 767
BisI GCNGC 9 cut(s) 230, 497, 555, 615, 678, 1017, 1196, 1311, 1395
BlpI GCTNAGC 1 cut(s) 1577
BlsI GCNGC 9 cut(s) 231, 498, 556, 616, 679, 1018, 1197, 1312, 1396
Bme1390I CCNGG 2 cut(s) 461, 1652
BmgT120I GGNCC 3 cut(s) 1654, 1689, 1690
BmiI GGNNCC 3 cut(s) 867, 1691, 1855
BmrFI CCNGG 2 cut(s) 461, 1652
BmsI GCATC 6 cut(s) 69, 326, 390, 619, 802, 1739
BpiI GAAGAC 1 cut(s) 1608
BpmI CTGGAG 2 cut(s) 1220, 1728
Bpu1102I GCTNAGC 1 cut(s) 1577
BpuEI CTTGAG 4 cut(s) 881, 956, 1058, 1071
BsaAI YACGTR 1 cut(s) 560
BsaJI CCNNGG 2 cut(s) 1596, 1650
BsaWI WCCGGW 1 cut(s) 787
Bsc4I CCNNNNNNNGG 2 cut(s) 1103, 1698
Bse118I RCCGGY 1 cut(s) 787
Bse1I ACTGG 2 cut(s) 883, 1279
Bse3DI GCAATG 2 cut(s) 119, 200
BseBI CCWGG 2 cut(s) 461, 1652
BseDI CCNNGG 2 cut(s) 1596, 1650
BseGI GGATG 3 cut(s) 139, 397, 1730
BseLI CCNNNNNNNGG 2 cut(s) 1103, 1698
BseMI GCAATG 2 cut(s) 119, 200
BseMII CTCAG 2 cut(s) 1244, 1314
BseNI ACTGG 2 cut(s) 883, 1279
BseRI GAGGAG 2 cut(s) 929, 1355
BseSI GKGCMC 1 cut(s) 1693
BseXI GCAGC 9 cut(s) 241, 508, 541, 601, 664, 1028, 1207, 1297, 1381
BseYI CCCAGC 2 cut(s) 680, 1692
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 2 cut(s) 58, 60
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 3 cut(s) 268, 1655, 1691
BshTI ACCGGT 1 cut(s) 787
BsiEI CGRYCG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 921
BsiSI CCGG 3 cut(s) 18, 265, 788
BslFI GGGAC 2 cut(s) 116, 521
BslI CCNNNNNNNGG 2 cut(s) 1103, 1698
BsmAI GTCTC 1 cut(s) 701
BsmFI GGGAC 2 cut(s) 116, 521
BsnI GGCC 3 cut(s) 268, 1655, 1691
Bsp120I GGGCCC 1 cut(s) 1689
Bsp1286I GDGCHC 2 cut(s) 921, 1693
Bsp1720I GCTNAGC 1 cut(s) 1577
BspACI CCGC 3 cut(s) 21, 1226, 1782
BspANI GGCC 3 cut(s) 268, 1655, 1691
BspCNI CTCAG 2 cut(s) 1245, 1315
BspFNI CGCG 2 cut(s) 58, 60
BspHI TCATGA 2 cut(s) 823, 1051
BspLI GGNNCC 3 cut(s) 867, 1691, 1855
BspPI GGATC 6 cut(s) 692, 783, 917, 1054, 1432, 1865
BsrDI GCAATG 2 cut(s) 119, 200
BsrFI RCCGGY 1 cut(s) 787
BsrI ACTGG 2 cut(s) 883, 1279
BssAI RCCGGY 1 cut(s) 787
BssECI CCNNGG 2 cut(s) 1596, 1650
BssT1I CCWWGG 1 cut(s) 1596
Bst2UI CCWGG 2 cut(s) 461, 1652
Bst4CI ACNGT 5 cut(s) 172, 571, 975, 1101, 1593
Bst6I CTCTTC 1 cut(s) 183
BstAPI GCANNNNNTGC 3 cut(s) 79, 235, 563
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 4 cut(s) 675, 1191, 1206, 1728
BstDEI CTNAG 5 cut(s) 618, 1253, 1323, 1577, 1802
BstF5I GGATG 3 cut(s) 139, 397, 1730
BstFNI CGCG 2 cut(s) 58, 60
BstHHI GCGC 3 cut(s) 60, 606, 1195
BstMAI GTCTC 1 cut(s) 701
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 6 cut(s) 79, 235, 563, 1186, 1195, 1201
BstNI CCWGG 2 cut(s) 461, 1652
BstNSI RCATGY 3 cut(s) 307, 540, 1730
BstSCI CCNGG 2 cut(s) 459, 1650
BstSFI CTRYAG 2 cut(s) 183, 450
BstSLI GKGCMC 1 cut(s) 1693
BstUI CGCG 2 cut(s) 58, 60
BstV1I GCAGC 9 cut(s) 241, 508, 541, 601, 664, 1028, 1207, 1297, 1381
BstV2I GAAGAC 1 cut(s) 1608
BstX2I RGATCY 3 cut(s) 684, 767, 1046
BstYI RGATCY 3 cut(s) 684, 767, 1046
BsuRI GGCC 3 cut(s) 268, 1655, 1691
BtsCI GGATG 3 cut(s) 139, 397, 1730
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 4 cut(s) 675, 1191, 1206, 1728
CciI TCATGA 2 cut(s) 823, 1051
CfoI GCGC 3 cut(s) 60, 606, 1195
Cfr10I RCCGGY 1 cut(s) 787
Cfr13I GGNCC 3 cut(s) 1654, 1689, 1690
CseI GACGC 2 cut(s) 257, 1485
Csp6I GTAC 2 cut(s) 122, 1562
CspAI ACCGGT 1 cut(s) 787
CspCI CAANNNNNGTGG 6 cut(s) 556, 591, 862, 897, 1846, 1881
CviQI GTAC 2 cut(s) 122, 1562
DdeI CTNAG 5 cut(s) 618, 1253, 1323, 1577, 1802
DraI TTTAAA 1 cut(s) 585
DraIII CACNNNGTG 1 cut(s) 1385
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 1797
Eco130I CCWWGG 1 cut(s) 1596
Eco24I GRGCYC 1 cut(s) 1693
Eco32I GATATC 1 cut(s) 854
Eco57I CTGAAG 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 1030
EcoRII CCWGG 2 cut(s) 459, 1650
EcoRV GATATC 1 cut(s) 854
EcoT14I CCWWGG 1 cut(s) 1596
EcoT22I ATGCAT 1 cut(s) 1732
EcoT38I GRGCYC 1 cut(s) 1693
ErhI CCWWGG 1 cut(s) 1596
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FaqI GGGAC 2 cut(s) 116, 521
FauI CCCGC 1 cut(s) 1219
FauNDI CATATG 1 cut(s) 808
FbaI TGATCA 1 cut(s) 1902
Fnu4HI GCNGC 9 cut(s) 230, 497, 555, 615, 678, 1017, 1196, 1311, 1395
FokI GGATG 3 cut(s) 146, 404, 1717
FriOI GRGCYC 1 cut(s) 1693
Fsp4HI GCNGC 9 cut(s) 230, 497, 555, 615, 678, 1017, 1196, 1311, 1395
FspBI CTAG 4 cut(s) 911, 1500, 1791, 1850
FspI TGCGCA 1 cut(s) 1194
GlaI GCGC 3 cut(s) 59, 605, 1194
GluI GCNGC 9 cut(s) 230, 497, 555, 615, 678, 1017, 1196, 1311, 1395
GsaI CCCAGC 2 cut(s) 684, 1696
GsuI CTGGAG 2 cut(s) 1220, 1728
HaeIII GGCC 3 cut(s) 268, 1655, 1691
HapII CCGG 3 cut(s) 18, 265, 788
HgaI GACGC 2 cut(s) 257, 1485
HhaI GCGC 3 cut(s) 60, 606, 1195
Hin6I GCGC 3 cut(s) 58, 604, 1193
HinP1I GCGC 3 cut(s) 58, 604, 1193
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 2 cut(s) 671, 1574
HinfI GANTC 4 cut(s) 104, 518, 740, 1303
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 3 cut(s) 18, 265, 788
HphI GGTGA 4 cut(s) 345, 1349, 1371, 1598
Hpy166II GTNNAC 4 cut(s) 286, 353, 971, 1589
Hpy188I TCNGA 9 cut(s) 47, 301, 310, 780, 1138, 1254, 1432, 1467, 1798
Hpy8I GTNNAC 4 cut(s) 286, 353, 971, 1589
HpyAV CCTTC 5 cut(s) 112, 279, 325, 836, 1139
HpyCH4III ACNGT 5 cut(s) 172, 571, 975, 1101, 1593
HpyCH4IV ACGT 3 cut(s) 559, 1291, 1510
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 235, 563, 1186, 1195, 1201
HpyF3I CTNAG 5 cut(s) 618, 1253, 1323, 1577, 1802
HpySE526I ACGT 3 cut(s) 559, 1291, 1510
HspAI GCGC 3 cut(s) 58, 604, 1193
Ksp22I TGATCA 1 cut(s) 1902
KspAI GTTAAC 1 cut(s) 286
LmnI GCTCC 6 cut(s) 20, 916, 1171, 1201, 1784, 1859
Lsp1109I GCAGC 9 cut(s) 241, 508, 541, 601, 664, 1028, 1207, 1297, 1381
LweI GCATC 6 cut(s) 69, 326, 390, 619, 802, 1739
MaeI CTAG 4 cut(s) 911, 1500, 1791, 1850
MaeII ACGT 3 cut(s) 559, 1291, 1510
MaeIII GTNAC 3 cut(s) 469, 733, 1287
MboII GAAGA 7 cut(s) 200, 337, 899, 1090, 1498, 1532, 1613
MfeI CAATTG 1 cut(s) 1022
MflI RGATCY 3 cut(s) 684, 767, 1046
MhlI GDGCHC 2 cut(s) 921, 1693
MlyI GAGTC 1 cut(s) 98
Mph1103I ATGCAT 1 cut(s) 1732
MroXI GAANNNNTTC 1 cut(s) 1845
MseI TTAA 5 cut(s) 285, 404, 584, 659, 833
MslI CAYNNNNRTG 1 cut(s) 1684
MspA1I CMGCKG 1 cut(s) 1198
MspI CCGG 3 cut(s) 18, 265, 788
MspR9I CCNGG 2 cut(s) 461, 1652
MunI CAATTG 1 cut(s) 1022
MvaI CCWGG 2 cut(s) 461, 1652
MvnI CGCG 2 cut(s) 58, 60
MwoI GCNNNNNNNGC 6 cut(s) 79, 235, 563, 1186, 1195, 1201
NdeI CATATG 1 cut(s) 808
NlaIV GGNNCC 3 cut(s) 867, 1691, 1855
NmuCI GTSAC 1 cut(s) 733
NsbI TGCGCA 1 cut(s) 1194
NsiI ATGCAT 1 cut(s) 1732
NspI RCATGY 3 cut(s) 307, 540, 1730
PaeI GCATGC 1 cut(s) 1730
PagI TCATGA 2 cut(s) 823, 1051
PciI ACATGT 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 1845
PfeI GAWTC 3 cut(s) 518, 740, 1303
PflMI CCANNNNNTGG 1 cut(s) 1103
PinAI ACCGGT 1 cut(s) 787
PkrI GCNGC 9 cut(s) 231, 498, 556, 616, 679, 1018, 1197, 1312, 1396
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 560
PscI ACATGT 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 459, 1650
PspFI CCCAGC 2 cut(s) 680, 1692
PspGI CCWGG 2 cut(s) 459, 1650
PspN4I GGNNCC 3 cut(s) 867, 1691, 1855
PspOMI GGGCCC 1 cut(s) 1689
PspPI GGNCC 3 cut(s) 1654, 1689, 1690
PsuI RGATCY 3 cut(s) 684, 767, 1046
PvuII CAGCTG 1 cut(s) 1198
RsaI GTAC 2 cut(s) 123, 1563
RsaNI GTAC 2 cut(s) 122, 1562
RseI CAYNNNNRTG 1 cut(s) 1684
SaqAI TTAA 5 cut(s) 285, 404, 584, 659, 833
SatI GCNGC 9 cut(s) 230, 497, 555, 615, 678, 1017, 1196, 1311, 1395
Sau96I GGNCC 3 cut(s) 1654, 1689, 1690
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 461, 1652
SduI GDGCHC 2 cut(s) 921, 1693
SfaNI GCATC 6 cut(s) 69, 326, 390, 619, 802, 1739
SfcI CTRYAG 2 cut(s) 183, 450
SmiMI CAYNNNNRTG 1 cut(s) 1684
SmlI CTYRAG 4 cut(s) 860, 935, 1073, 1086
SmoI CTYRAG 4 cut(s) 860, 935, 1073, 1086
SphI GCATGC 1 cut(s) 1730
SsiI CCGC 3 cut(s) 21, 1226, 1782
SspMI CTAG 4 cut(s) 911, 1500, 1791, 1850
StyD4I CCNGG 2 cut(s) 459, 1650
StyI CCWWGG 1 cut(s) 1596
TaaI ACNGT 5 cut(s) 172, 571, 975, 1101, 1593
TaiI ACGT 3 cut(s) 562, 1294, 1513
TaqI TCGA 3 cut(s) 207, 1183, 1538
TaqII GACCGA 1 cut(s) 78
TfiI GAWTC 3 cut(s) 518, 740, 1303
Tru1I TTAA 5 cut(s) 285, 404, 584, 659, 833
Tru9I TTAA 5 cut(s) 285, 404, 584, 659, 833
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 9 cut(s) 229, 496, 554, 614, 677, 1016, 1195, 1310, 1394
Tsp45I GTSAC 1 cut(s) 733
TspGWI ACGGA 1 cut(s) 1690
TspRI CASTG 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 1103
XapI RAATTY 9 cut(s) 40, 433, 590, 724, 1030, 1247, 1328, 1354, 1455
XbaI TCTAGA 1 cut(s) 910
XceI RCATGY 3 cut(s) 307, 540, 1730
XmnI GAANNNNTTC 1 cut(s) 1845
XspI CTAG 4 cut(s) 911, 1500, 1791, 1850
Zsp2I ATGCAT 1 cut(s) 1732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.