Rorug05G0173400

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
16140810 .. 16144985
4176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0173400.1

Sequence Viewer

Length: 1209 bp
ATGGAGAAGAGTCCGCACTCGAATTCCGGTGGAGACTACCGGAGGGAACCGCTTCTAGAGTCGGAGGACGGCGTCGCGCCAAGCAGGTCTTGGAGGCTTAACATCAATGAGTTTCGCATGCCGGAACAGAACGAGGGTGAAGGTGAAAAAGGGTGTCGACCCTTCAGTAATATCCGTCGTCTCTGCACACCCAAGAAAAAGTACAAAGTTGAGCAATATTACAAGCAACAAGGAAGGCTTCTTGAAGGGTACAGTGAGATGGAGACCATGGCTGAAGAGGGTTGGTTGCCAGGAAGTCTCACAGAGGATGAAATGAAGCAGCTAGTTAAGAGTGAGAGGATGGCAGTTCATATATCAAATGTAGCTAATTTGCTGCTCTTTGTTGCAAAAGTTTATGCTTCAATCATGAGCAGATCACTGGCAGTTATTGCCTCTACCTTGGATTCCCTCTTGGATCTCTTGTCTGGTTTTATTTTGTGGTTCACTGCCCATGCCATGAGAAAGCCAAACCGCTTTCATTATCCTATTGGAAAGAAACGTATGCAACCAGTGGGTATCATTGTCTTTGCATCTGTTATGGCAACTCTTGGACTGCAAATATTGCTTGAGTCTGCTCGGGAACTCGTCTCAAAGTCCCCAACAGAAATGAAAGATGCACAGGAGAAGTGGATGATTGCCATCATGGTCTCGGTGACAGTAGTGAAGTTTCTGCTCATGCTCTACTGTCGTAGATTTGAAAATGAAATTGTACGCGCCTATGCACAAGACCACTTCTTTGATGTCATTACTAATTCAGTTGGTCTAGCAGCAGCAGTCCTAGCCCACCGGTATAAATGGTGGATTGATCCTGCTGGTGCTATTGTGATTGCACTTTACACCATCAATACATGGGCGAGGACAGTCTTGGAGAATGTGCGTTCGCTAATCGGAAGAACAGCTCCACCTGAGTTTTTGGCCAAGTTAACCTATCTGATATGGAACCACCATGAGGAGATCAAGCACATTGATACAGTGAGAGCATACACATTTGGTAACTATTACTTTGTGGAGGTCGACATAGTCCTGCCAGAAGACATGCTTCTGCACAAAGCACATAACATTGGCGAGACACTCCAAGAGAAGCTCGAGCAACTTGCTGAAGTCGAACGGGCCTTTGTGCATATCGATTTTGAGTTTAGTCACCGGCCGGAACACAAAACTAGCGTATGA

Protein Analysis

402

Amino Acids

46.27

Weight (kDa)

6.72

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 117 - 309 1.9e-33 Cation efflux transmembrane domain
ZT_dimer PF16916 316 - 389 3.9e-09 Cation efflux protein, cytoplasmic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 75
AccI GTMKAC 2 cut(s) 157, 1053
AccII CGCG 2 cut(s) 77, 753
AciI CCGC 3 cut(s) 14, 50, 511
AclWI GGATC 2 cut(s) 462, 839
AcoI YGGCCR 2 cut(s) 954, 1184
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 3 cut(s) 148, 294, 1158
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 203, 251, 750
AfiI CCNNNNNNNGG 1 cut(s) 988
AgeI ACCGGT 1 cut(s) 825
AgsI TTSAA 3 cut(s) 245, 402, 737
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 4 cut(s) 322, 365, 938, 1123
AluI AGCT 4 cut(s) 322, 365, 938, 1123
Alw26I GTCTC 7 cut(s) 27, 185, 257, 302, 631, 691, 1100
AlwI GGATC 2 cut(s) 462, 839
Ama87I CYCGRG 2 cut(s) 615, 1124
AoxI GGCC 3 cut(s) 954, 1149, 1184
ApeKI GCWGC 4 cut(s) 319, 373, 806, 809
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 758, 790
AsiGI ACCGGT 1 cut(s) 825
Asp700I GAANNNNTTC 1 cut(s) 51
AspLEI GCGC 2 cut(s) 79, 755
AspS9I GGNCC 1 cut(s) 1149
AsuHPI GGTGA 4 cut(s) 149, 155, 703, 1172
AvaI CYCGRG 2 cut(s) 615, 1124
BalI TGGCCA 1 cut(s) 956
BbsI GAAGAC 1 cut(s) 1077
BbvI GCAGC 4 cut(s) 331, 360, 818, 821
BccI CCATC 4 cut(s) 253, 334, 686, 887
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 1115, 1149
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 7 cut(s) 27, 185, 257, 302, 631, 691, 1100
BfaI CTAG 5 cut(s) 56, 323, 803, 818, 1200
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 4 cut(s) 320, 374, 807, 810
BlsI GCNGC 4 cut(s) 321, 375, 808, 811
Bme1390I CCNGG 1 cut(s) 291
BmeT110I CYCGRG 2 cut(s) 615, 1124
BmgT120I GGNCC 1 cut(s) 1149
BmiI GGNNCC 2 cut(s) 48, 980
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 2 cut(s) 578, 643
BpiI GAAGAC 1 cut(s) 1077
BpuEI CTTGAG 1 cut(s) 626
Bsa29I ATCGAT 1 cut(s) 1164
BsaBI GATNNNNATC 1 cut(s) 677
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 257, 691
BsaJI CCNNGG 2 cut(s) 267, 438
BsaWI WCCGGW 3 cut(s) 26, 39, 825
Bsc4I CCNNNNNNNGG 1 cut(s) 988
Bse118I RCCGGY 2 cut(s) 825, 1182
Bse1I ACTGG 2 cut(s) 423, 548
Bse8I GATNNNNATC 1 cut(s) 677
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 1164
BseDI CCNNGG 2 cut(s) 267, 438
BseGI GGATG 3 cut(s) 313, 345, 675
BseJI GATNNNNATC 1 cut(s) 677
BseLI CCNNNNNNNGG 1 cut(s) 988
BseMII CTCAG 1 cut(s) 936
BseNI ACTGG 2 cut(s) 423, 548
BseRI GAGGAG 1 cut(s) 1004
BseX3I CGGCCG 1 cut(s) 1184
BseXI GCAGC 4 cut(s) 331, 360, 818, 821
BsgI GTGCAG 2 cut(s) 169, 1067
Bsh1236I CGCG 2 cut(s) 77, 753
Bsh1285I CGRYCG 1 cut(s) 1187
BshFI GGCC 3 cut(s) 956, 1151, 1186
BshTI ACCGGT 1 cut(s) 825
BshVI ATCGAT 1 cut(s) 1164
BsiEI CGRYCG 1 cut(s) 1187
BsiHKCI CYCGRG 2 cut(s) 615, 1124
BsiSI CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 1 cut(s) 988
BsmAI GTCTC 7 cut(s) 27, 185, 257, 302, 631, 691, 1100
BsmBI CGTCTC 2 cut(s) 185, 631
BsmFI GGGAC 1 cut(s) 619
BsnI GGCC 3 cut(s) 956, 1151, 1186
Bso31I GGTCTC 2 cut(s) 257, 691
BsoBI CYCGRG 2 cut(s) 615, 1124
Bsp143I GATC 4 cut(s) 413, 454, 844, 993
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 3 cut(s) 14, 50, 511
BspANI GGCC 3 cut(s) 956, 1151, 1186
BspCNI CTCAG 1 cut(s) 937
BspDI ATCGAT 1 cut(s) 1164
BspFNI CGCG 2 cut(s) 77, 753
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 48, 980
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 2 cut(s) 462, 839
BspTNI GGTCTC 2 cut(s) 257, 691
BsrFI RCCGGY 2 cut(s) 825, 1182
BsrI ACTGG 2 cut(s) 423, 548
BssAI RCCGGY 2 cut(s) 825, 1182
BssECI CCNNGG 2 cut(s) 267, 438
BssMI GATC 4 cut(s) 413, 454, 844, 993
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 2 cut(s) 267, 438
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 5 cut(s) 254, 697, 725, 901, 1012
Bst6I CTCTTC 2 cut(s) 2, 270
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 2 cut(s) 428, 601
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 945
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 3 cut(s) 313, 345, 675
BstFNI CGCG 2 cut(s) 77, 753
BstHHI GCGC 2 cut(s) 79, 755
BstKTI GATC 4 cut(s) 416, 457, 847, 996
BstMAI GTCTC 7 cut(s) 27, 185, 257, 302, 631, 691, 1100
BstMBI GATC 4 cut(s) 413, 454, 844, 993
BstMCI CGRYCG 1 cut(s) 1187
BstMWI GCNNNNNNNGC 3 cut(s) 428, 601, 818
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 121, 1078
BstSCI CCNGG 1 cut(s) 289
BstUI CGCG 2 cut(s) 77, 753
BstV1I GCAGC 4 cut(s) 331, 360, 818, 821
BstV2I GAAGAC 1 cut(s) 1077
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BstZI CGGCCG 1 cut(s) 1184
Bsu15I ATCGAT 1 cut(s) 1164
BsuRI GGCC 3 cut(s) 956, 1151, 1186
BsuTUI ATCGAT 1 cut(s) 1164
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 313, 345, 675
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 5 cut(s) 259, 416, 483, 555, 1017
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 119
CciI TCATGA 1 cut(s) 405
CfoI GCGC 2 cut(s) 79, 755
Cfr10I RCCGGY 2 cut(s) 825, 1182
Cfr13I GGNCC 1 cut(s) 1149
ClaI ATCGAT 1 cut(s) 1164
CseI GACGC 1 cut(s) 61
Csp6I GTAC 3 cut(s) 202, 250, 749
CspAI ACCGGT 1 cut(s) 825
CviQI GTAC 3 cut(s) 202, 250, 749
DdeI CTNAG 1 cut(s) 945
DpnI GATC 4 cut(s) 415, 456, 846, 995
DpnII GATC 4 cut(s) 413, 454, 844, 993
EaeI YGGCCR 2 cut(s) 954, 1184
EagI CGGCCG 1 cut(s) 1184
Eam1104I CTCTTC 2 cut(s) 2, 270
EarI CTCTTC 2 cut(s) 2, 270
EclXI CGGCCG 1 cut(s) 1184
Eco130I CCWWGG 2 cut(s) 267, 438
Eco31I GGTCTC 2 cut(s) 257, 691
Eco52I CGGCCG 1 cut(s) 1184
Eco57I CTGAAG 3 cut(s) 148, 294, 1158
Eco88I CYCGRG 2 cut(s) 615, 1124
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 267, 438
ErhI CCWWGG 2 cut(s) 267, 438
Esp3I CGTCTC 2 cut(s) 185, 631
FalI AAGNNNNNCTT 6 cut(s) 73, 105, 222, 254, 1062, 1094
FaqI GGGAC 1 cut(s) 619
FblI GTMKAC 2 cut(s) 157, 1053
Fnu4HI GCNGC 4 cut(s) 320, 374, 807, 810
FokI GGATG 3 cut(s) 320, 352, 682
Fsp4HI GCNGC 4 cut(s) 320, 374, 807, 810
FspBI CTAG 5 cut(s) 56, 323, 803, 818, 1200
GlaI GCGC 2 cut(s) 78, 754
GluI GCNGC 4 cut(s) 320, 374, 807, 810
HaeIII GGCC 3 cut(s) 956, 1151, 1186
HapII CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
HgaI GACGC 1 cut(s) 61
HhaI GCGC 2 cut(s) 79, 755
Hin1I GRCGYC 1 cut(s) 72
Hin6I GCGC 2 cut(s) 77, 753
HinP1I GCGC 2 cut(s) 77, 753
HincII GTYRAC 3 cut(s) 158, 963, 1054
HindII GTYRAC 3 cut(s) 158, 963, 1054
HinfI GANTC 4 cut(s) 10, 59, 443, 608
HpaI GTTAAC 1 cut(s) 963
HpaII CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
HphI GGTGA 4 cut(s) 149, 155, 703, 1172
Hpy166II GTNNAC 4 cut(s) 158, 483, 963, 1054
Hpy188I TCNGA 3 cut(s) 64, 929, 972
Hpy188III TCNNGA 4 cut(s) 56, 242, 406, 617
Hpy8I GTNNAC 4 cut(s) 158, 483, 963, 1054
Hpy99I CGWCG 2 cut(s) 77, 180
HpyAV CCTTC 4 cut(s) 134, 172, 228, 239
HpyCH4III ACNGT 5 cut(s) 254, 697, 725, 901, 1012
HpyCH4IV ACGT 1 cut(s) 538
HpyF10VI GCNNNNNNNGC 3 cut(s) 428, 601, 818
HpyF3I CTNAG 1 cut(s) 945
HpySE526I ACGT 1 cut(s) 538
Hsp92I GRCGYC 1 cut(s) 72
HspAI GCGC 2 cut(s) 77, 753
KspAI GTTAAC 1 cut(s) 963
Kzo9I GATC 4 cut(s) 413, 454, 844, 993
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 4 cut(s) 331, 360, 818, 821
LweI GCATC 2 cut(s) 578, 643
MaeI CTAG 5 cut(s) 56, 323, 803, 818, 1200
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 3 cut(s) 691, 1031, 1178
MalI GATC 4 cut(s) 415, 456, 846, 995
MboI GATC 4 cut(s) 413, 454, 844, 993
MboII GAAGA 4 cut(s) 19, 287, 942, 1082
MflI RGATCY 1 cut(s) 454
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 4 cut(s) 22, 367, 744, 790
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 3 cut(s) 19, 68, 617
MmeI TCCRAC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 956
MroXI GAANNNNTTC 1 cut(s) 51
MscI TGGCCA 1 cut(s) 956
MseI TTAA 3 cut(s) 99, 327, 962
Msp20I TGGCCA 1 cut(s) 956
MspI CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 2 cut(s) 77, 753
MwoI GCNNNNNNNGC 3 cut(s) 428, 601, 818
NcoI CCATGG 1 cut(s) 267
NdeII GATC 4 cut(s) 413, 454, 844, 993
NlaIV GGNNCC 2 cut(s) 48, 980
NmuCI GTSAC 2 cut(s) 691, 1178
NspI RCATGY 2 cut(s) 121, 1078
PaeI GCATGC 1 cut(s) 121
PaeR7I CTCGAG 1 cut(s) 1124
PagI TCATGA 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 1 cut(s) 443
PflFI GACNNNGTC 2 cut(s) 71, 1058
PinAI ACCGGT 1 cut(s) 825
PkrI GCNGC 4 cut(s) 321, 375, 808, 811
PleI GAGTC 3 cut(s) 18, 67, 616
PpsI GAGTC 3 cut(s) 18, 67, 616
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 48, 980
PspPI GGNCC 1 cut(s) 1149
PspXI VCTCGAGB 1 cut(s) 1124
PsuI RGATCY 1 cut(s) 454
PsyI GACNNNGTC 2 cut(s) 71, 1058
RsaI GTAC 3 cut(s) 203, 251, 750
RsaNI GTAC 3 cut(s) 202, 250, 749
SalI GTCGAC 2 cut(s) 156, 1052
SaqAI TTAA 3 cut(s) 99, 327, 962
SatI GCNGC 4 cut(s) 320, 374, 807, 810
Sau3AI GATC 4 cut(s) 413, 454, 844, 993
Sau96I GGNCC 1 cut(s) 1149
SchI GAGTC 3 cut(s) 19, 68, 617
ScrFI CCNGG 1 cut(s) 291
SfaNI GCATC 2 cut(s) 578, 643
Sfr274I CTCGAG 1 cut(s) 1124
SlaI CTCGAG 1 cut(s) 1124
SmlI CTYRAG 2 cut(s) 605, 1124
SmoI CTYRAG 2 cut(s) 605, 1124
SphI GCATGC 1 cut(s) 121
Sse9I AATT 4 cut(s) 22, 367, 744, 790
SsiI CCGC 3 cut(s) 14, 50, 511
SspI AATATT 2 cut(s) 218, 600
SspMI CTAG 5 cut(s) 56, 323, 803, 818, 1200
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 267, 438
TaaI ACNGT 5 cut(s) 254, 697, 725, 901, 1012
TaiI ACGT 1 cut(s) 541
TaqI TCGA 6 cut(s) 20, 157, 1053, 1125, 1143, 1164
TasI AATT 4 cut(s) 22, 367, 744, 790
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 3 cut(s) 99, 327, 962
Tru9I TTAA 3 cut(s) 99, 327, 962
TscAI CASTG 5 cut(s) 259, 423, 490, 555, 1017
TseFI GTSAC 2 cut(s) 691, 1178
TseI GCWGC 4 cut(s) 319, 373, 806, 809
Tsp45I GTSAC 2 cut(s) 691, 1178
TspDTI ATGAA 6 cut(s) 324, 329, 338, 506, 662, 756
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 5 cut(s) 259, 423, 490, 555, 1017
Tth111I GACNNNGTC 2 cut(s) 71, 1058
XapI RAATTY 1 cut(s) 22
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 2 cut(s) 121, 1078
XcmI CCANNNNNNNNNTGG 1 cut(s) 87
XhoI CTCGAG 1 cut(s) 1124
XmiI GTMKAC 2 cut(s) 157, 1053
XmnI GAANNNNTTC 1 cut(s) 51
XspI CTAG 5 cut(s) 56, 323, 803, 818, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.