Rh5CG297100

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
32681798 .. 32695800
14003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG297100.1

Sequence Viewer

Length: 1338 bp
ATGTCGGGAAGTGCACCTTTATATAGGAAGGCGTTTGTTTTTTTCACTTCACCTATATCGAAAGATTTGGTTGGGCAGATAAAGGGGGATGGAAGTCTAACAAGTCGCATATCTGCATTGAGTGAGATGAATTTGGAGTATTATGCTATAGACAGCCAGGGTTTTGTTACCAATAATGAGAGAGCTTTAGCGCAGCTTTATGGGGACAAGGACGATTCACGCGAAGCCGAAGCATTTTTCGGGGTATTACAGTGTTTGAGTGAGATGGCTGCACGTGTAGCCACAGTCTTTGCTTCTTTAAGGGAATTTCCTATTGTTCGCTACCGAGCTGCCAATAGGATTGATGCCACCATGGAGACCACTTTTCGTGATTTAATTCCTACAAAGCTTGCTGCTGGTGTCTGGGATTGTCTCATGCATTACAAAAGAACAATTCCAAATTTCCCTCAGATAGAAACATGCGAGTTACTTATCCTTGACAGATCTGTGGATCAGATTGCGCCAATCATCCACGAGTGGACATACGATGCCTTGTGTCATGACTTGTTAGATATAGAAGGAAATAAATATGTGCATGAGGTTGCGAGCATAAACGGTGGTCCTCCTGACAAGAAGGATGTTCTTCTAGAGGAGCGTGATCCTGTCTGGCTTGAACTTCGCGATCATCATTTAGGATTTGCCTTGGAATGGTTGAATTCGAAACTTTCCAATCTTAAGCAGAACAAGGCTGCACGATTCGAAAATTCAAGAGATGGGCAATGTCCTGAGCTATCTTCAAGGGAATTGAAAGAGTTAACTGAAGCATTGCCACAGTATGTTGAACTAAAAGAAAAGCTCTCCCTTCATATAGAGATTGCATCGAAACTAAACAGAATTGTCAGGAACCTTGAGCTCCCATTCCTTTCAGAGCTGGAGCAGGGTCTTGTTTTTGGAGATGCAGGAATAAAAGAGGTGATCATGTTTCTGAGAATACATGGGCCGTATATTACTCGCGAACATAAGCTGCGCTTGTTGATGATTCTTGCTGCCATCTATCCTGAGAAATTTGAGGATGAAGAAGATCTACAAATGATGATGAAGTACGCATATTTACTACCCCAGGATATGACTGTTGTGAGGAATATGAAGTTGATTGGGGAGAGCAGAGAAGGCTCATCTGGAATTTTTCCTCTGAAGTTTGGTATTGCTAAGGTGAATGTATTTAACAGATACTTTTTTGAACCCGTTCAGTTTGTTGATCAATATCTGACAAGCAGTTATGCAATAATCAGAGAAAATGTTATAGGAAAGAGCGTCCAAGAGAAGATGAATGGCTTTATTCGCGCTTTTTTCCGATGA

Protein Analysis

445

Amino Acids

51.02

Weight (kDa)

5.56

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 6 - 363 5.2e-65 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 222, 660, 993, 1323
AclWI GGATC 2 cut(s) 498, 632
AcsI RAATTY 7 cut(s) 130, 305, 439, 694, 742, 1043, 1161
AcuI CTGAAG 2 cut(s) 819, 1193
AcvI CACGTG 1 cut(s) 275
AfaI GTAC 1 cut(s) 1082
AfiI CCNNNNNNNGG 1 cut(s) 687
AflII CTTAAG 1 cut(s) 713
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 7 cut(s) 653, 694, 747, 777, 787, 821, 1220
AjnI CCWGG 2 cut(s) 156, 1098
AluBI AGCT 9 cut(s) 185, 196, 329, 388, 769, 835, 892, 910, 1003
AluI AGCT 9 cut(s) 185, 196, 329, 388, 769, 835, 892, 910, 1003
Alw21I GWGCWC 2 cut(s) 16, 894
Alw26I GTCTC 2 cut(s) 350, 416
Alw44I GTGCAC 1 cut(s) 12
AlwI GGATC 2 cut(s) 498, 632
AoxI GGCC 1 cut(s) 977
ApaLI GTGCAC 1 cut(s) 12
ApeKI GCWGC 7 cut(s) 193, 269, 329, 392, 728, 1003, 1025
ApoI RAATTY 7 cut(s) 130, 305, 439, 694, 742, 1043, 1161
Asp700I GAANNNNTTC 1 cut(s) 1224
AspLEI GCGC 4 cut(s) 193, 502, 1008, 1325
AspS9I GGNCC 2 cut(s) 599, 977
AsuHPI GGTGA 3 cut(s) 42, 964, 1204
AsuII TTCGAA 2 cut(s) 698, 738
AvaII GGWCC 1 cut(s) 599
BaeGI GKGCMC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 894
BarI GAAGNNNNNNTAC 2 cut(s) 1047, 1079
BauI CACGAG 1 cut(s) 512
BbrPI CACGTG 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 16, 894
BbvI GCAGC 7 cut(s) 205, 256, 316, 379, 715, 990, 1012
BccI CCATC 4 cut(s) 83, 259, 746, 1037
BceAI ACGGC 1 cut(s) 964
BciT130I CCWGG 2 cut(s) 158, 1100
BclI TGATCA 2 cut(s) 954, 1237
BcoDI GTCTC 2 cut(s) 350, 416
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 713
BglII AGATCT 2 cut(s) 482, 1060
BisI GCNGC 7 cut(s) 194, 270, 330, 393, 729, 1004, 1026
BlsI GCNGC 7 cut(s) 195, 271, 331, 394, 730, 1005, 1027
Bme1390I CCNGG 2 cut(s) 158, 1100
Bme18I GGWCC 1 cut(s) 599
BmgT120I GGNCC 2 cut(s) 599, 977
BmiI GGNNCC 1 cut(s) 884
BmrFI CCNGG 2 cut(s) 158, 1100
BmsI GCATC 4 cut(s) 334, 517, 866, 925
BpmI CTGGAG 1 cut(s) 932
Bpu10I CCTNAGC 2 cut(s) 765, 1188
Bpu14I TTCGAA 2 cut(s) 698, 738
BpuEI CTTGAG 1 cut(s) 908
BsaAI YACGTR 1 cut(s) 275
BsaBI GATNNNNATC 1 cut(s) 1242
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 4 cut(s) 157, 351, 681, 1098
Bsc4I CCNNNNNNNGG 1 cut(s) 687
Bse3DI GCAATG 2 cut(s) 764, 803
Bse8I GATNNNNATC 1 cut(s) 1242
BseBI CCWGG 2 cut(s) 158, 1100
BseDI CCNNGG 4 cut(s) 157, 351, 681, 1098
BseGI GGATG 4 cut(s) 94, 507, 622, 1057
BseJI GATNNNNATC 1 cut(s) 1242
BseLI CCNNNNNNNGG 1 cut(s) 687
BseMI GCAATG 2 cut(s) 764, 803
BseMII CTCAG 4 cut(s) 461, 756, 956, 1029
BseRI GAGGAG 1 cut(s) 644
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 7 cut(s) 205, 256, 316, 379, 715, 990, 1012
BsgI GTGCAG 2 cut(s) 255, 714
Bsh1236I CGCG 4 cut(s) 222, 660, 993, 1323
BshFI GGCC 1 cut(s) 979
BsiHKAI GWGCWC 2 cut(s) 16, 894
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 687
BsmAI GTCTC 2 cut(s) 350, 416
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 979
Bso31I GGTCTC 1 cut(s) 350
Bsp119I TTCGAA 2 cut(s) 698, 738
Bsp1286I GDGCHC 2 cut(s) 16, 894
Bsp143I GATC 7 cut(s) 482, 490, 637, 661, 954, 1060, 1237
Bsp19I CCATGG 1 cut(s) 351
Bsp68I TCGCGA 2 cut(s) 660, 993
BspANI GGCC 1 cut(s) 979
BspCNI CTCAG 4 cut(s) 460, 757, 957, 1030
BspFNI CGCG 4 cut(s) 222, 660, 993, 1323
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 884
BspPI GGATC 2 cut(s) 498, 632
BspT104I TTCGAA 2 cut(s) 698, 738
BspTI CTTAAG 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 350
BsrDI GCAATG 2 cut(s) 764, 803
BssECI CCNNGG 4 cut(s) 157, 351, 681, 1098
BssMI GATC 7 cut(s) 482, 490, 637, 661, 954, 1060, 1237
BssSI CACGAG 1 cut(s) 512
BssT1I CCWWGG 2 cut(s) 351, 681
Bst2BI CACGAG 1 cut(s) 512
Bst2UI CCWGG 2 cut(s) 158, 1100
Bst4CI ACNGT 5 cut(s) 252, 286, 596, 813, 1111
BstAFI CTTAAG 1 cut(s) 713
BstBAI YACGTR 1 cut(s) 275
BstBI TTCGAA 2 cut(s) 698, 738
BstC8I GCNNGC 2 cut(s) 390, 586
BstDEI CTNAG 5 cut(s) 447, 765, 965, 1038, 1188
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 4 cut(s) 94, 507, 622, 1057
BstFNI CGCG 4 cut(s) 222, 660, 993, 1323
BstHHI GCGC 4 cut(s) 193, 502, 1008, 1325
BstKTI GATC 7 cut(s) 485, 493, 640, 664, 957, 1063, 1240
BstMAI GTCTC 2 cut(s) 350, 416
BstMBI GATC 7 cut(s) 482, 490, 637, 661, 954, 1060, 1237
BstMWI GCNNNNNNNGC 3 cut(s) 278, 1149, 1320
BstNI CCWGG 2 cut(s) 158, 1100
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 156, 1098
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 16
BstUI CGCG 4 cut(s) 222, 660, 993, 1323
BstV1I GCAGC 7 cut(s) 205, 256, 316, 379, 715, 990, 1012
BstX2I RGATCY 2 cut(s) 482, 1060
BstYI RGATCY 2 cut(s) 482, 1060
BsuRI GGCC 1 cut(s) 979
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 4 cut(s) 94, 507, 622, 1057
BtsIMutI CAGTG 1 cut(s) 257
BtuMI TCGCGA 2 cut(s) 660, 993
Cac8I GCNNGC 2 cut(s) 390, 586
CciI TCATGA 1 cut(s) 538
CfoI GCGC 4 cut(s) 193, 502, 1008, 1325
Cfr13I GGNCC 2 cut(s) 599, 977
CseI GACGC 1 cut(s) 1282
Csp6I GTAC 1 cut(s) 1081
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 7 cut(s) 352, 415, 459, 539, 575, 958, 974
CviQI GTAC 1 cut(s) 1081
DdeI CTNAG 5 cut(s) 447, 765, 965, 1038, 1188
DpnI GATC 7 cut(s) 484, 492, 639, 663, 956, 1062, 1239
DpnII GATC 7 cut(s) 482, 490, 637, 661, 954, 1060, 1237
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 2 cut(s) 351, 681
Eco24I GRGCYC 1 cut(s) 894
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 599
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 2 cut(s) 819, 1193
Eco72I CACGTG 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 892
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 2 cut(s) 156, 1098
EcoT14I CCWWGG 2 cut(s) 351, 681
EcoT22I ATGCAT 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 2 cut(s) 351, 681
FaeI CATG 7 cut(s) 355, 418, 462, 542, 578, 961, 977
FalI AAGNNNNNCTT 3 cut(s) 33, 992, 1024
FaqI GGGAC 1 cut(s) 218
FatI CATG 7 cut(s) 351, 414, 458, 538, 574, 957, 973
FbaI TGATCA 2 cut(s) 954, 1237
Fnu4HI GCNGC 7 cut(s) 194, 270, 330, 393, 729, 1004, 1026
FokI GGATG 4 cut(s) 101, 494, 629, 1064
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 7 cut(s) 194, 270, 330, 393, 729, 1004, 1026
FspBI CTAG 1 cut(s) 626
GlaI GCGC 4 cut(s) 192, 501, 1007, 1324
GluI GCNGC 7 cut(s) 194, 270, 330, 393, 729, 1004, 1026
GsuI CTGGAG 1 cut(s) 932
HaeIII GGCC 1 cut(s) 979
HgaI GACGC 1 cut(s) 1282
HhaI GCGC 4 cut(s) 193, 502, 1008, 1325
Hin1II CATG 7 cut(s) 355, 418, 462, 542, 578, 961, 977
Hin6I GCGC 4 cut(s) 191, 500, 1006, 1323
HinP1I GCGC 4 cut(s) 191, 500, 1006, 1323
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 3 cut(s) 215, 735, 1018
HpaI GTTAAC 1 cut(s) 795
HphI GGTGA 3 cut(s) 42, 964, 1204
Hpy166II GTNNAC 3 cut(s) 14, 519, 795
Hpy188I TCNGA 8 cut(s) 450, 495, 907, 966, 1173, 1248, 1271, 1334
Hpy8I GTNNAC 3 cut(s) 14, 519, 795
HpyAV CCTTC 5 cut(s) 22, 551, 607, 851, 1142
HpyCH4III ACNGT 5 cut(s) 252, 286, 596, 813, 1111
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 9 cut(s) 14, 116, 272, 418, 574, 731, 857, 938, 1262
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 1149, 1320
HpyF3I CTNAG 5 cut(s) 447, 765, 965, 1038, 1188
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 7 cut(s) 355, 418, 462, 542, 578, 961, 977
HspAI GCGC 4 cut(s) 191, 500, 1006, 1323
Ksp22I TGATCA 2 cut(s) 954, 1237
KspAI GTTAAC 1 cut(s) 795
Kzo9I GATC 7 cut(s) 482, 490, 637, 661, 954, 1060, 1237
LmnI GCTCC 3 cut(s) 631, 897, 913
Lsp1109I GCAGC 7 cut(s) 205, 256, 316, 379, 715, 990, 1012
LweI GCATC 4 cut(s) 334, 517, 866, 925
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 2 cut(s) 166, 465
MalI GATC 7 cut(s) 484, 492, 639, 663, 956, 1062, 1239
MboI GATC 7 cut(s) 482, 490, 637, 661, 954, 1060, 1237
MboII GAAGA 5 cut(s) 614, 765, 1067, 1070, 1315
MflI RGATCY 2 cut(s) 482, 1060
MhlI GDGCHC 2 cut(s) 16, 894
MnlI CCTC 8 cut(s) 456, 571, 612, 622, 943, 1042, 1110, 1179
Mph1103I ATGCAT 1 cut(s) 420
MroXI GAANNNNTTC 1 cut(s) 1224
MseI TTAA 5 cut(s) 299, 374, 714, 794, 1203
MspCI CTTAAG 1 cut(s) 713
MspR9I CCNGG 2 cut(s) 158, 1100
MvaI CCWGG 2 cut(s) 158, 1100
MvnI CGCG 4 cut(s) 222, 660, 993, 1323
MwoI GCNNNNNNNGC 3 cut(s) 278, 1149, 1320
NcoI CCATGG 1 cut(s) 351
NdeII GATC 7 cut(s) 482, 490, 637, 661, 954, 1060, 1237
NlaIII CATG 7 cut(s) 355, 418, 462, 542, 578, 961, 977
NlaIV GGNNCC 1 cut(s) 884
NruI TCGCGA 2 cut(s) 660, 993
NsiI ATGCAT 1 cut(s) 420
NspI RCATGY 1 cut(s) 462
NspV TTCGAA 2 cut(s) 698, 738
PagI TCATGA 1 cut(s) 538
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 1224
PfeI GAWTC 3 cut(s) 215, 735, 1018
PkrI GCNGC 7 cut(s) 195, 271, 331, 394, 730, 1005, 1027
PmaCI CACGTG 1 cut(s) 275
PmlI CACGTG 1 cut(s) 275
Ppu21I YACGTR 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 894
Psp6I CCWGG 2 cut(s) 156, 1098
PspCI CACGTG 1 cut(s) 275
PspGI CCWGG 2 cut(s) 156, 1098
PspN4I GGNNCC 1 cut(s) 884
PspPI GGNCC 2 cut(s) 599, 977
PsuI RGATCY 2 cut(s) 482, 1060
RruI TCGCGA 2 cut(s) 660, 993
RsaI GTAC 1 cut(s) 1082
RsaNI GTAC 1 cut(s) 1081
SacI GAGCTC 1 cut(s) 894
SaqAI TTAA 5 cut(s) 299, 374, 714, 794, 1203
SatI GCNGC 7 cut(s) 194, 270, 330, 393, 729, 1004, 1026
Sau3AI GATC 7 cut(s) 482, 490, 637, 661, 954, 1060, 1237
Sau96I GGNCC 2 cut(s) 599, 977
ScrFI CCNGG 2 cut(s) 158, 1100
SduI GDGCHC 2 cut(s) 16, 894
SfaNI GCATC 4 cut(s) 334, 517, 866, 925
SfcI CTRYAG 1 cut(s) 147
SfuI TTCGAA 2 cut(s) 698, 738
SinI GGWCC 1 cut(s) 599
SmlI CTYRAG 2 cut(s) 713, 887
SmoI CTYRAG 2 cut(s) 713, 887
SspMI CTAG 1 cut(s) 626
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 2 cut(s) 156, 1098
StyI CCWWGG 2 cut(s) 351, 681
TaaI ACNGT 5 cut(s) 252, 286, 596, 813, 1111
TaiI ACGT 1 cut(s) 277
TaqI TCGA 4 cut(s) 59, 698, 738, 860
TfiI GAWTC 3 cut(s) 215, 735, 1018
Tru1I TTAA 5 cut(s) 299, 374, 714, 794, 1203
Tru9I TTAA 5 cut(s) 299, 374, 714, 794, 1203
TscAI CASTG 1 cut(s) 257
TseI GCWGC 7 cut(s) 193, 269, 329, 392, 728, 1003, 1025
TspDTI ATGAA 6 cut(s) 143, 833, 1068, 1091, 1139, 1322
TspRI CASTG 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 713
VneI GTGCAC 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 599
XapI RAATTY 7 cut(s) 130, 305, 439, 694, 742, 1043, 1161
XbaI TCTAGA 1 cut(s) 625
XceI RCATGY 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 1224
XspI CTAG 1 cut(s) 626
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.