Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001124

Physical Location & Seq

Genomic Coordinates Forward (+)

60531222 .. 60535970

Gene Structure 4749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCTACACGTGTAGCCACAGTCTTTGCTTCTTTAAGGGTAGATGAATTTCCTATTGTTCGCTACCAAGCTGCCAATAGGATTGATGCCACCATGGAGACCACTTTTCGTGATTTAATTCCTACAAAGCTTGCTGCTGGTGTCTGGGATTGTCTCATGCATTACAAAAGAACAATTCCAAATTTCCCTCAGATAGAAACATGCGAGTTACTTATCCTTGACAGATCTGTGGATCAGGTTGCGAGCATAAACGGTGGTCCTCCTGACAAGAAGGATGTTCTTCTAGAGGAGCGTGATCCTGTCTGGCTTGAACTTCTCGATCATCATTTAGGATTTGCCTTGGAATGGTTGAATTCGAAACTTTCCAATCTTAAGCAGAACAAGGCTGCACGATTCGAAAATTCAAGAGATGGGCAATGTCCTGAGCTATCTTCAAGGGAATTGAAAGAGATAACTGAAGCATTGCCACAGTATGTTGAACTAAAAGAAAAGCTCTCCCTTCATATAGAGATTGCATCGAAACTAAACAGAATTGTCAGGAACCTTGAGCTCCCATTCCTTTCGGAGCTGGAGCAGGGTCTTGTTTTTGGAGATGCAGGAATAAAAGAGCCGTATATTACTCGCGAACATAAGCTGCGCTTGTTGATGATTCTTGCTGCCATCTATCCTGAGAAATTTGAGGATGAAGAAGATCTACATATGATGATGAAGTACGCATATTTACTACCCCAGGATATGACTGTTGTGAGGAATATGAAGTTGATTGGGGAGAGCAGAGAAGGCTCATCTGGAATTTTTCCTCTGAAGTTTGGTATTGCTAAGGAACTTATAGAAAAGCTTAGCAATGGTGCACTGTCAGAGGAATTATATCCATGTGTGAATCCCAACGCTCGTTTACTGAGATCGAGGAGGACACCAATGTGGGCCCACCGCCGGAATTCCGATAATGGATTTTCAAGGGATGCATCTACTGATTTCGAAAAGATGGGCCGACGCATATTTGTAGTTATAGTAGGTGGAGCTACTAGATCAGAGCTTAGGGTTTGTCGGAAACTCACAGCAAAGCTCAAAAGGGAAGTTATTCTGGGCTCCTCATCTCTTGACGATCCTGCAACTTTTGTTACGAATCTGAAAATGATCACAGCAGACGACCAACCGCTCACGTTGGATGATATCCAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0016020 GO:0019898 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 map04721

Pfam Domains

Protein Families

Sec1

Protein Analysis

394

Amino Acids

44.94

Weight (kDa)

6.08

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	1 - 375	2e-42	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12360 AT4G12120
fragaria_vesca	FvH4_2g27020 FvH4_2g27020 FvH4_2g27020 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g00770 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992 FvH4_5g29992
malus_domestica	MD04G1079000.v1.1 MD06G1073800.v1.1
prunus_persica	Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1 Prupe.5G080200_v2.0.a1
pyrus_communis	pycom04g07080 pycom06g05270
rosa_chinensis	RchiOBHm_Chr5g0038751 RchiOBHm_Chr6g0295901 RchiOBHm_Chr7g0201411
rosa_laevigata	RLG00000003677 RLG00000011758 RLG00000033865
rosa_multiflora	Rmu_sc0001469.1_g000008 Rmu_sc0005722.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042410 Rroxscaffold_3G00255300 Rroxscaffold_7G00172070
rosa_rugosa	Rorug05G0173300.1 Rorug05G0173400 Rorug05G0173500 Rorug06G0255000 Rorug06G0255000 Rorug07G0063400 Rorug07G0063500
rosa_samantha	Rh5AG260700 Rh5BG264400 Rh5CG297100 Rh5DG272800 Rh6AG368700 Rh6BG376400 Rh6CG382600 Rh6DG369200 Rh7AG190300 Rh7BG192700 Rh7CG201800 Rh7DG195300
rosa_wichuraiana	Rw5G024070 Rw5G024360 Rw6G032150 Rw7G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1159
AccII	CGCG	1 cut(s)	624
AciI	CCGC	2 cut(s)	931, 1157
AclWI	GGATC	3 cut(s)	240, 290, 1100
AcsI	RAATTY	7 cut(s)	47, 181, 352, 400, 674, 792, 937
AcuI	CTGAAG	2 cut(s)	477, 824
AcvI	CACGTG	1 cut(s)	11
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	2 cut(s)	345, 933
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	2 cut(s)	8, 10
AgsI	TTSAA	7 cut(s)	311, 352, 405, 435, 445, 479, 957
AjnI	CCWGG	1 cut(s)	729
AleI	CACNNNNGTG	1 cut(s)	919
Alw21I	GWGCWC	2 cut(s)	552, 853
Alw26I	GTCTC	2 cut(s)	92, 158
Alw44I	GTGCAC	1 cut(s)	849
AlwI	GGATC	3 cut(s)	240, 290, 1100
AoxI	GGCC	2 cut(s)	924, 988
ApaI	GGGCCC	1 cut(s)	928
ApaLI	GTGCAC	1 cut(s)	849
ApeKI	GCWGC	5 cut(s)	71, 134, 386, 634, 656
ApoI	RAATTY	7 cut(s)	47, 181, 352, 400, 674, 792, 937
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	4 cut(s)	257, 924, 925, 988
AsuII	TTCGAA	3 cut(s)	356, 396, 978
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	2 cut(s)	853, 928
BanII	GRGCYC	3 cut(s)	552, 928, 1091
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
BbrPI	CACGTG	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	552, 853
BbvI	GCAGC	5 cut(s)	58, 121, 373, 621, 643
BccI	CCATC	3 cut(s)	404, 668, 979
BceAI	ACGGC	1 cut(s)	595
BciT130I	CCWGG	1 cut(s)	731
BclI	TGATCA	1 cut(s)	1137
BcoDI	GTCTC	2 cut(s)	92, 158
BfaI	CTAG	2 cut(s)	284, 1026
BfrI	CTTAAG	1 cut(s)	371
BglII	AGATCT	3 cut(s)	224, 691, 1179
BisI	GCNGC	5 cut(s)	72, 135, 387, 635, 657
BlpI	GCTNAGC	1 cut(s)	839
BlsI	GCNGC	5 cut(s)	73, 136, 388, 636, 658
Bme1390I	CCNGG	1 cut(s)	731
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	4 cut(s)	257, 924, 925, 988
BmiI	GGNNCC	3 cut(s)	542, 926, 1090
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	5 cut(s)	76, 524, 583, 952, 974
BpmI	CTGGAG	1 cut(s)	590
Bpu10I	CCTNAGC	3 cut(s)	423, 819, 1037
Bpu1102I	GCTNAGC	1 cut(s)	839
Bpu14I	TTCGAA	3 cut(s)	356, 396, 978
BpuEI	CTTGAG	1 cut(s)	566
BsaAI	YACGTR	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	93, 339, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 933
Bse3DI	GCAATG	3 cut(s)	422, 461, 850
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	3 cut(s)	93, 339, 729
BseGI	GGATG	4 cut(s)	280, 688, 967, 1174
BseLI	CCNNNNNNNGG	2 cut(s)	345, 933
BseMI	GCAATG	3 cut(s)	422, 461, 850
BseMII	CTCAG	4 cut(s)	203, 414, 660, 890
BseRI	GAGGAG	3 cut(s)	302, 922, 1081
BseSI	GKGCMC	2 cut(s)	853, 928
BseXI	GCAGC	5 cut(s)	58, 121, 373, 621, 643
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	624
BshFI	GGCC	2 cut(s)	926, 990
BsiHKAI	GWGCWC	2 cut(s)	552, 853
BsiSI	CCGG	1 cut(s)	934
BslI	CCNNNNNNNGG	2 cut(s)	345, 933
BsmAI	GTCTC	2 cut(s)	92, 158
BsnI	GGCC	2 cut(s)	926, 990
Bso31I	GGTCTC	1 cut(s)	92
Bsp119I	TTCGAA	3 cut(s)	356, 396, 978
Bsp120I	GGGCCC	1 cut(s)	924
Bsp1286I	GDGCHC	4 cut(s)	552, 853, 928, 1091
Bsp1720I	GCTNAGC	1 cut(s)	839
Bsp19I	CCATGG	1 cut(s)	93
Bsp68I	TCGCGA	1 cut(s)	624
BspACI	CCGC	2 cut(s)	931, 1157
BspANI	GGCC	2 cut(s)	926, 990
BspCNI	CTCAG	4 cut(s)	202, 415, 661, 891
BspFNI	CGCG	1 cut(s)	624
BspLI	GGNNCC	3 cut(s)	542, 926, 1090
BspPI	GGATC	3 cut(s)	240, 290, 1100
BspT104I	TTCGAA	3 cut(s)	356, 396, 978
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	1159
BsrDI	GCAATG	3 cut(s)	422, 461, 850
BssECI	CCNNGG	3 cut(s)	93, 339, 729
BssT1I	CCWWGG	2 cut(s)	93, 339
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	5 cut(s)	22, 254, 471, 742, 855
BstAFI	CTTAAG	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	11
BstBI	TTCGAA	3 cut(s)	356, 396, 978
BstC8I	GCNNGC	2 cut(s)	132, 244
BstDEI	CTNAG	7 cut(s)	189, 423, 669, 819, 839, 899, 1037
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	4 cut(s)	280, 688, 967, 1174
BstFNI	CGCG	1 cut(s)	624
BstHHI	GCGC	1 cut(s)	639
BstMAI	GTCTC	2 cut(s)	92, 158
BstMWI	GCNNNNNNNGC	1 cut(s)	780
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	729
BstSLI	GKGCMC	2 cut(s)	853, 928
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	5 cut(s)	58, 121, 373, 621, 643
BstX2I	RGATCY	3 cut(s)	224, 691, 1179
BstYI	RGATCY	3 cut(s)	224, 691, 1179
BsuRI	GGCC	2 cut(s)	926, 990
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	4 cut(s)	280, 688, 967, 1174
BtsIMutI	CAGTG	1 cut(s)	851
BtuMI	TCGCGA	1 cut(s)	624
Cac8I	GCNNGC	2 cut(s)	132, 244
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	4 cut(s)	257, 924, 925, 988
CseI	GACGC	1 cut(s)	1002
Csp6I	GTAC	1 cut(s)	712
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	4 cut(s)	94, 157, 201, 873
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	7 cut(s)	189, 423, 669, 819, 839, 899, 1037
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	2 cut(s)	93, 339
Eco24I	GRGCYC	3 cut(s)	552, 928, 1091
Eco31I	GGTCTC	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	1174
Eco47I	GGWCC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	2 cut(s)	477, 824
Eco72I	CACGTG	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	550
EcoRI	GAATTC	2 cut(s)	352, 937
EcoRII	CCWGG	1 cut(s)	729
EcoRV	GATATC	1 cut(s)	1174
EcoT14I	CCWWGG	2 cut(s)	93, 339
EcoT22I	ATGCAT	2 cut(s)	162, 967
EcoT38I	GRGCYC	3 cut(s)	552, 928, 1091
ErhI	CCWWGG	2 cut(s)	93, 339
FaeI	CATG	4 cut(s)	97, 160, 204, 876
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FatI	CATG	4 cut(s)	93, 156, 200, 872
FauNDI	CATATG	1 cut(s)	699
FbaI	TGATCA	1 cut(s)	1137
Fnu4HI	GCNGC	5 cut(s)	72, 135, 387, 635, 657
FokI	GGATG	4 cut(s)	287, 695, 974, 1181
FriOI	GRGCYC	3 cut(s)	552, 928, 1091
Fsp4HI	GCNGC	5 cut(s)	72, 135, 387, 635, 657
FspBI	CTAG	2 cut(s)	284, 1026
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	5 cut(s)	72, 135, 387, 635, 657
GsuI	CTGGAG	1 cut(s)	590
HaeIII	GGCC	2 cut(s)	926, 990
HapII	CCGG	1 cut(s)	934
HgaI	GACGC	1 cut(s)	1002
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	4 cut(s)	97, 160, 204, 876
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HindIII	AAGCTT	2 cut(s)	128, 836
HinfI	GANTC	4 cut(s)	393, 649, 880, 1126
HpaII	CCGG	1 cut(s)	934
Hpy166II	GTNNAC	2 cut(s)	851, 896
Hpy188I	TCNGA	9 cut(s)	192, 565, 804, 859, 943, 1033, 1050, 1131, 1184
Hpy8I	GTNNAC	2 cut(s)	851, 896
Hpy99I	CGWCG	1 cut(s)	996
HpyAV	CCTTC	3 cut(s)	265, 509, 773
HpyCH4III	ACNGT	5 cut(s)	22, 254, 471, 742, 855
HpyCH4IV	ACGT	2 cut(s)	10, 1163
HpyCH4V	TGCA	7 cut(s)	160, 389, 515, 596, 851, 965, 1112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	780
HpyF3I	CTNAG	7 cut(s)	189, 423, 669, 819, 839, 899, 1037
HpySE526I	ACGT	2 cut(s)	10, 1163
Hsp92II	CATG	4 cut(s)	97, 160, 204, 876
HspAI	GCGC	1 cut(s)	637
Ksp22I	TGATCA	1 cut(s)	1137
LmnI	GCTCC	6 cut(s)	289, 555, 565, 571, 1019, 1094
Lsp1109I	GCAGC	5 cut(s)	58, 121, 373, 621, 643
LweI	GCATC	5 cut(s)	76, 524, 583, 952, 974
MaeI	CTAG	2 cut(s)	284, 1026
MaeII	ACGT	2 cut(s)	10, 1163
MaeIII	GTNAC	2 cut(s)	207, 1120
MbiI	CCGCTC	1 cut(s)	1159
MboII	GAAGA	4 cut(s)	272, 423, 698, 701
MflI	RGATCY	3 cut(s)	224, 691, 1179
MhlI	GDGCHC	4 cut(s)	552, 853, 928, 1091
MmeI	TCCRAC	2 cut(s)	1028, 1146
Mph1103I	ATGCAT	2 cut(s)	162, 967
MroXI	GAANNNNTTC	1 cut(s)	1080
MseI	TTAA	3 cut(s)	35, 116, 372
MslI	CAYNNNNRTG	1 cut(s)	919
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	934
MspR9I	CCNGG	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	1 cut(s)	780
NcoI	CCATGG	1 cut(s)	93
NdeI	CATATG	1 cut(s)	699
NlaIII	CATG	4 cut(s)	97, 160, 204, 876
NlaIV	GGNNCC	3 cut(s)	542, 926, 1090
NruI	TCGCGA	1 cut(s)	624
NsiI	ATGCAT	2 cut(s)	162, 967
NspI	RCATGY	1 cut(s)	204
NspV	TTCGAA	3 cut(s)	356, 396, 978
OliI	CACNNNNGTG	1 cut(s)	919
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	4 cut(s)	393, 649, 880, 1126
PkrI	GCNGC	5 cut(s)	73, 136, 388, 636, 658
PmaCI	CACGTG	1 cut(s)	11
PmlI	CACGTG	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	729
PspCI	CACGTG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	3 cut(s)	542, 926, 1090
PspOMI	GGGCCC	1 cut(s)	924
PspPI	GGNCC	4 cut(s)	257, 924, 925, 988
PsuI	RGATCY	3 cut(s)	224, 691, 1179
RruI	TCGCGA	1 cut(s)	624
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	1 cut(s)	919
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	35, 116, 372
SatI	GCNGC	5 cut(s)	72, 135, 387, 635, 657
Sau96I	GGNCC	4 cut(s)	257, 924, 925, 988
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	4 cut(s)	552, 853, 928, 1091
SfaNI	GCATC	5 cut(s)	76, 524, 583, 952, 974
SfuI	TTCGAA	3 cut(s)	356, 396, 978
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	919
SmlI	CTYRAG	2 cut(s)	371, 545
SmoI	CTYRAG	2 cut(s)	371, 545
SsiI	CCGC	2 cut(s)	931, 1157
SspMI	CTAG	2 cut(s)	284, 1026
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	2 cut(s)	93, 339
TaaI	ACNGT	5 cut(s)	22, 254, 471, 742, 855
TaiI	ACGT	2 cut(s)	13, 1166
TaqI	TCGA	6 cut(s)	318, 356, 396, 518, 905, 978
TfiI	GAWTC	4 cut(s)	393, 649, 880, 1126
Tru1I	TTAA	3 cut(s)	35, 116, 372
Tru9I	TTAA	3 cut(s)	35, 116, 372
TscAI	CASTG	1 cut(s)	858
TseI	GCWGC	5 cut(s)	71, 134, 386, 634, 656
TspDTI	ATGAA	5 cut(s)	60, 491, 699, 722, 770
TspRI	CASTG	1 cut(s)	858
Vha464I	CTTAAG	1 cut(s)	371
VneI	GTGCAC	1 cut(s)	849
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	7 cut(s)	47, 181, 352, 400, 674, 792, 937
XbaI	TCTAGA	1 cut(s)	283
XceI	RCATGY	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	2 cut(s)	284, 1026
Zsp2I	ATGCAT	2 cut(s)	162, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.