Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

25135694 .. 25140038

Gene Structure 4345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCGATGTACCTACTTGAATTTTGAGATATGCTTCAAACTTGACAGGAAGGATTTCACGGATTATGCGGAATTTTGCTTCAAGACATATGGAGACAGAGTCAAGAACTGGACGACATTCAATGAGCCTAGAGTGGTGGCTGCTCTTGGCTATGACAATGCACTGAATCCTCCGGCACGGTGCTCCAAAGCTTATGGAAATTGCACAGCTGGGAATTCAGAGATACTGCGAAAAGTATCAGGCCATTTGCTCCCAAAAGAGAATGATAAATTTGTTGAAAGAGTACAAGCTAGAGTTGAGGAGGAGGATCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCAAGAAAAACAACCGAGAATTTCAGACCGGATTCCATAAACGATGGTAAAAGCGAGAATGAGGAAAGTAAAGGCCAGACAATTCAAAGCATTAATGAAAGCGAGTCTACTGCAATCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

165

Amino Acids

18.49

Weight (kDa)

5.06

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	18 - 64	8.1e-13	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	479
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	5 cut(s)	19, 71, 214, 269, 391
AfaI	GTAC	2 cut(s)	10, 285
AgsI	TTSAA	6 cut(s)	19, 37, 82, 121, 278, 458
AluBI	AGCT	4 cut(s)	191, 209, 290, 329
AluI	AGCT	4 cut(s)	191, 209, 290, 329
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	2 cut(s)	241, 445
ApeKI	GCWGC	3 cut(s)	140, 326, 341
ApoI	RAATTY	5 cut(s)	19, 71, 214, 269, 391
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	127, 328, 338
BccI	CCATC	1 cut(s)	410
BcgI	CGANNNNNNTGC	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	3 cut(s)	129, 291, 345
BisI	GCNGC	3 cut(s)	141, 327, 342
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	3 cut(s)	142, 328, 343
BmsI	GCATC	2 cut(s)	328, 340
Bpu1102I	GCTNAGC	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	343, 355
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	2 cut(s)	314, 317
BseXI	GCAGC	3 cut(s)	127, 328, 338
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	2 cut(s)	243, 447
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	173, 401
BsmAI	GTCTC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	243, 447
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	307
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	243, 447
BspCNI	CTCAG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	113
BssMI	GATC	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	343, 355
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 350
BstV1I	GCAGC	3 cut(s)	127, 328, 338
BsuRI	GGCC	2 cut(s)	243, 447
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	343, 355
BtsIMutI	CAGTG	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	9, 284
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	9 cut(s)	127, 140, 150, 191, 209, 243, 290, 329, 447
CviKI_1	RGCY	9 cut(s)	127, 140, 150, 191, 209, 243, 290, 329, 447
CviQI	GTAC	2 cut(s)	9, 284
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	337
FaiI	YATR	8 cut(s)	31, 66, 88, 90, 153, 195, 335, 410
FatI	CATG	1 cut(s)	333
FauNDI	CATATG	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	3 cut(s)	141, 327, 342
FokI	GGATG	2 cut(s)	350, 362
Fsp4HI	GCNGC	3 cut(s)	141, 327, 342
FspBI	CTAG	3 cut(s)	129, 291, 345
GluI	GCNGC	3 cut(s)	141, 327, 342
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	243, 447
HapII	CCGG	2 cut(s)	173, 401
Hin1II	CATG	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	4 cut(s)	99, 166, 404, 476
HpaII	CCGG	2 cut(s)	173, 401
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	2 cut(s)	220, 398
Hpy188III	TCNNGA	3 cut(s)	82, 103, 375
Hpy8I	GTNNAC	1 cut(s)	480
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	4 cut(s)	161, 204, 359, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 350
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	2 cut(s)	188, 255
LpnPI	CCDG	7 cut(s)	31, 94, 186, 195, 225, 414, 461
Lsp1109I	GCAGC	3 cut(s)	127, 328, 338
LweI	GCATC	2 cut(s)	328, 340
MaeI	CTAG	3 cut(s)	129, 291, 345
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	7 cut(s)	19, 71, 199, 214, 269, 391, 453
MlyI	GAGTC	2 cut(s)	108, 485
MnlI	CCTC	5 cut(s)	180, 292, 295, 298, 427
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	1 cut(s)	465
MspA1I	CMGCKG	2 cut(s)	209, 329
MspI	CCGG	2 cut(s)	173, 401
MwoI	GCNNNNNNNGC	2 cut(s)	323, 350
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	166, 404
PflFI	GACNNNGTC	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	142, 328, 343
PleI	GAGTC	2 cut(s)	107, 484
PpsI	GAGTC	2 cut(s)	107, 484
PshBI	ATTAAT	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	98
PvuII	CAGCTG	2 cut(s)	209, 329
RsaI	GTAC	2 cut(s)	10, 285
RsaNI	GTAC	2 cut(s)	9, 284
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	3 cut(s)	141, 327, 342
Sau3AI	GATC	1 cut(s)	307
SchI	GAGTC	2 cut(s)	108, 485
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	5 cut(s)	14, 193, 211, 292, 331
SfaNI	GCATC	2 cut(s)	328, 340
Sse9I	AATT	7 cut(s)	19, 71, 199, 214, 269, 391, 453
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	3 cut(s)	129, 291, 345
TaaI	ACNGT	1 cut(s)	180
TasI	AATT	7 cut(s)	19, 71, 199, 214, 269, 391, 453
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	166, 404
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	3 cut(s)	140, 326, 341
TspDTI	ATGAA	1 cut(s)	483
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	168
Tth111I	GACNNNGTC	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	5 cut(s)	19, 71, 214, 269, 391
XmiI	GTMKAC	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	3 cut(s)	129, 291, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.