Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Forward (+)

301978 .. 309259

Gene Structure 7282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCACTTCAAGGCACTCTCATCTCTGCAATCATACTTGTTTTTAGCTGTGCAGTGGCAAGTATAGCTACCTCCCCAAGCCATTACGACGTTGCTTCCATCAACCGGAGCACCTTTCCGGCAGGTTTCATATTTGGGACAGCTTCTTCAGCTTACCAGGTGCTGCAAAAGAAGATGGAAGAGGACCAAGCATATGGGACACTTACACTCACAACATTCCAGGAGGATGTTGGCATCATGAAAAATATGGGTTTTGATGCTTACAGATTCTCCATCTCATGGTCTAGATTGTTACCAGGTCTAAAGCCCTTTGTCACACTCTTCCATTGGGATCTTCCCCAAGCTTTAGAAGATGAATACGGTGGCTTCTTAAGCCCTCAAATTGTAAACCATTTCCAAGACTACGCAGAGCTATGCTTCAAGGAATTTGGTGATAGAGTTAAGGACTGGATCACATTAAACGAGCCCTGGAGCTACGCTAATGGTGGTTATGTAATTGGGACGTTTGCACCATGCCGATGTTCTGAATGGCAAAACCTAAATTGCACCGGTGGAAATTCAGGAACAGAGCCATATTTAGTTTCACACTACCAGCTTCTAGCTCACGCAGCAGCCGTAAAGTTATACAAGGAGAAGTATCAGGCTGATCAGAAGGGTGTGATAGGGATAACAATACTGTCACACTGGTTTGTGCCCTTTTCTGATGCCAAGCACCATGAAGAAGCTGCTCTACGAGCATTGGATTTTATGTTTGGATGTTCGAAGGGGCTGCAAAAGAAGGTGGTAGAGGACCGTGTGTATGGGACGCCTTTACTCACAAGTATCCAGGAAGATGTGAAGATGTTGAAGGACATAGGTTGGGATGCTTACAGATTCTCAATCTCATGGTCTAGACTGTTACCAAATGGAAAGCTGAGTGGGGGTGTGAACCAGGAAGGAATCAAATATTACAAGAACCTCATCAACGAGCTTCTAGCAAATGGTATAAGCCCCTACGTCACACTCTTTCATTGGGATACGCCCCAAGCTTTAGAAGAAGAATACGGTGGTTTCCTAAGCCCTCAAATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0004565 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0015925 GO:0015926 GO:0016143 GO:0016145 GO:0016787 GO:0016798 GO:0019137 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0033907 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0047701 GO:0050896 GO:0071704 GO:0080083 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00380 ko00460 ko00500 ko00940 ko01100 ko01110 map00380 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

357

Amino Acids

40.04

Weight (kDa)

5.5

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	72 - 99	2.4e-07	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	100 - 251	2e-42	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	275 - 357	5e-33	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	279
AclWI	GGATC	2 cut(s)	339, 458
AcsI	RAATTY	2 cut(s)	425, 556
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	806
AfiI	CCNNNNNNNGG	2 cut(s)	105, 279
AflII	CTTAAG	1 cut(s)	370
AgeI	ACCGGT	1 cut(s)	548
AgsI	TTSAA	3 cut(s)	11, 421, 847
AjnI	CCWGG	6 cut(s)	156, 219, 295, 467, 825, 930
Alw21I	GWGCWC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	339, 458
AlwNI	CAGNNNCTG	1 cut(s)	163
ApeKI	GCWGC	5 cut(s)	163, 608, 611, 725, 769
ApoI	RAATTY	2 cut(s)	425, 556
AsiGI	ACCGGT	1 cut(s)	548
AspS9I	GGNCC	2 cut(s)	184, 790
AsuHPI	GGTGA	1 cut(s)	443
AsuII	TTCGAA	1 cut(s)	761
AvaII	GGWCC	2 cut(s)	184, 790
BaeGI	GKGCMC	1 cut(s)	696
BanII	GRGCYC	1 cut(s)	468
BarI	GAAGNNNNNNTAC	2 cut(s)	714, 746
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	5 cut(s)	150, 620, 623, 712, 756
BccI	CCATC	3 cut(s)	107, 169, 281
BceAI	ACGGC	1 cut(s)	599
BcgI	CGANNNNNNTGC	2 cut(s)	751, 785
BciT130I	CCWGG	6 cut(s)	158, 221, 297, 469, 827, 932
BciVI	GTATCC	2 cut(s)	833, 1009
BclI	TGATCA	1 cut(s)	646
BfaI	CTAG	4 cut(s)	285, 599, 891, 974
BfrI	CTTAAG	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	113
BfuI	GTATCC	2 cut(s)	833, 1009
BisI	GCNGC	5 cut(s)	164, 609, 612, 726, 770
BlsI	GCNGC	5 cut(s)	165, 610, 613, 727, 771
Bme1390I	CCNGG	6 cut(s)	158, 221, 297, 469, 827, 932
Bme18I	GGWCC	2 cut(s)	184, 790
BmgT120I	GGNCC	2 cut(s)	184, 790
BmrFI	CCNGG	6 cut(s)	158, 221, 297, 469, 827, 932
BmsI	GCATC	4 cut(s)	243, 247, 694, 853
BpmI	CTGGAG	1 cut(s)	490
Bpu10I	CCTNAGC	1 cut(s)	1055
Bpu14I	TTCGAA	1 cut(s)	761
BsaHI	GRCGYC	1 cut(s)	806
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	2 cut(s)	105, 548
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 279
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	2 cut(s)	452, 689
BseBI	CCWGG	6 cut(s)	158, 221, 297, 469, 827, 932
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	3 cut(s)	232, 761, 868
BseLI	CCNNNNNNNGG	2 cut(s)	105, 279
BseMII	CTCAG	1 cut(s)	905
BseNI	ACTGG	2 cut(s)	452, 689
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	5 cut(s)	150, 620, 623, 712, 756
BsgI	GTGCAG	1 cut(s)	72
BshTI	ACCGGT	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	106, 119, 549
BslFI	GGGAC	4 cut(s)	151, 211, 514, 817
BslI	CCNNNNNNNGG	2 cut(s)	105, 279
BsmFI	GGGAC	4 cut(s)	151, 211, 514, 817
Bsp119I	TTCGAA	1 cut(s)	761
Bsp1286I	GDGCHC	3 cut(s)	113, 468, 696
Bsp143I	GATC	3 cut(s)	331, 450, 646
BspCNI	CTCAG	1 cut(s)	906
BspHI	TCATGA	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	339, 458
BspT104I	TTCGAA	1 cut(s)	761
BspTI	CTTAAG	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	548
BsrI	ACTGG	2 cut(s)	452, 689
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	3 cut(s)	331, 450, 646
BssNI	GRCGYC	1 cut(s)	806
Bst2UI	CCWGG	6 cut(s)	158, 221, 297, 469, 827, 932
Bst4CI	ACNGT	5 cut(s)	362, 678, 794, 897, 1046
Bst6I	CTCTTC	2 cut(s)	174, 326
BstACI	GRCGYC	1 cut(s)	806
BstAFI	CTTAAG	1 cut(s)	370
BstBI	TTCGAA	1 cut(s)	761
BstDEI	CTNAG	2 cut(s)	914, 1055
BstF5I	GGATG	3 cut(s)	232, 761, 868
BstKTI	GATC	3 cut(s)	334, 453, 649
BstMBI	GATC	3 cut(s)	331, 450, 646
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 149, 372, 608, 734
BstNI	CCWGG	6 cut(s)	158, 221, 297, 469, 827, 932
BstSCI	CCNGG	6 cut(s)	156, 219, 295, 467, 825, 930
BstSLI	GKGCMC	1 cut(s)	696
BstV1I	GCAGC	5 cut(s)	150, 620, 623, 712, 756
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	331
BsuI	GTATCC	2 cut(s)	833, 1009
BtsCI	GGATG	3 cut(s)	232, 761, 868
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 682
BveI	ACCTGC	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	163
CciI	TCATGA	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	184, 790
CseI	GACGC	1 cut(s)	814
CsiI	ACCWGGT	2 cut(s)	156, 295
CspAI	ACCGGT	1 cut(s)	548
CviAII	CATG	5 cut(s)	238, 279, 513, 716, 885
DdeI	CTNAG	2 cut(s)	914, 1055
DpnI	GATC	3 cut(s)	333, 452, 648
DpnII	GATC	3 cut(s)	331, 450, 646
Eam1104I	CTCTTC	2 cut(s)	174, 326
EarI	CTCTTC	2 cut(s)	174, 326
Eco24I	GRGCYC	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	184, 790
Eco57I	CTGAAG	1 cut(s)	132
EcoRII	CCWGG	6 cut(s)	156, 219, 295, 467, 825, 930
EcoT38I	GRGCYC	1 cut(s)	468
FaeI	CATG	5 cut(s)	241, 282, 516, 719, 888
FaqI	GGGAC	4 cut(s)	151, 211, 514, 817
FatI	CATG	5 cut(s)	237, 278, 512, 715, 884
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	5 cut(s)	164, 609, 612, 726, 770
FokI	GGATG	3 cut(s)	239, 768, 875
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	5 cut(s)	164, 609, 612, 726, 770
FspBI	CTAG	4 cut(s)	285, 599, 891, 974
GluI	GCNGC	5 cut(s)	164, 609, 612, 726, 770
GsuI	CTGGAG	1 cut(s)	490
HapII	CCGG	3 cut(s)	106, 119, 549
HgaI	GACGC	1 cut(s)	814
Hin1I	GRCGYC	1 cut(s)	806
Hin1II	CATG	5 cut(s)	241, 282, 516, 719, 888
HindIII	AAGCTT	2 cut(s)	342, 1026
HinfI	GANTC	3 cut(s)	267, 873, 939
HpaII	CCGG	3 cut(s)	106, 119, 549
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	2 cut(s)	388, 928
Hpy188I	TCNGA	3 cut(s)	526, 651, 703
Hpy188III	TCNNGA	4 cut(s)	238, 285, 561, 891
Hpy8I	GTNNAC	2 cut(s)	388, 928
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	5 cut(s)	646, 757, 772, 841, 929
HpyCH4III	ACNGT	5 cut(s)	362, 678, 794, 897, 1046
HpyCH4IV	ACGT	3 cut(s)	90, 503, 996
HpyCH4V	TGCA	6 cut(s)	29, 53, 166, 509, 546, 772
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 149, 372, 608, 734
HpyF3I	CTNAG	2 cut(s)	914, 1055
HpySE526I	ACGT	3 cut(s)	90, 503, 996
Hsp92I	GRCGYC	1 cut(s)	806
Hsp92II	CATG	5 cut(s)	241, 282, 516, 719, 888
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	331, 450, 646
LmnI	GCTCC	2 cut(s)	108, 471
Lsp1109I	GCAGC	5 cut(s)	150, 620, 623, 712, 756
LweI	GCATC	4 cut(s)	243, 247, 694, 853
MabI	ACCWGGT	2 cut(s)	156, 295
MaeI	CTAG	4 cut(s)	285, 599, 891, 974
MaeII	ACGT	3 cut(s)	90, 503, 996
MaeIII	GTNAC	5 cut(s)	291, 313, 678, 897, 997
MalI	GATC	3 cut(s)	333, 452, 648
MboI	GATC	3 cut(s)	331, 450, 646
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	3 cut(s)	113, 468, 696
MluCI	AATT	6 cut(s)	381, 425, 495, 541, 556, 1065
MnlI	CCTC	7 cut(s)	82, 175, 217, 387, 781, 968, 1071
MseI	TTAA	3 cut(s)	371, 441, 458
MslI	CAYNNNNRTG	1 cut(s)	517
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	3 cut(s)	106, 119, 549
MspR9I	CCNGG	6 cut(s)	158, 221, 297, 469, 827, 932
MvaI	CCWGG	6 cut(s)	158, 221, 297, 469, 827, 932
MwoI	GCNNNNNNNGC	5 cut(s)	65, 149, 372, 608, 734
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	331, 450, 646
NlaIII	CATG	5 cut(s)	241, 282, 516, 719, 888
NmuCI	GTSAC	3 cut(s)	313, 678, 997
NspV	TTCGAA	1 cut(s)	761
PagI	TCATGA	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PfeI	GAWTC	3 cut(s)	267, 873, 939
PflMI	CCANNNNNTGG	1 cut(s)	279
PfoI	TCCNGGA	2 cut(s)	219, 825
PinAI	ACCGGT	1 cut(s)	548
PkrI	GCNGC	5 cut(s)	165, 610, 613, 727, 771
Psp6I	CCWGG	6 cut(s)	156, 219, 295, 467, 825, 930
PspGI	CCWGG	6 cut(s)	156, 219, 295, 467, 825, 930
PspPI	GGNCC	2 cut(s)	184, 790
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	517
SaqAI	TTAA	3 cut(s)	371, 441, 458
SatI	GCNGC	5 cut(s)	164, 609, 612, 726, 770
Sau3AI	GATC	3 cut(s)	331, 450, 646
Sau96I	GGNCC	2 cut(s)	184, 790
ScrFI	CCNGG	6 cut(s)	158, 221, 297, 469, 827, 932
SduI	GDGCHC	3 cut(s)	113, 468, 696
SexAI	ACCWGGT	2 cut(s)	156, 295
SfaNI	GCATC	4 cut(s)	243, 247, 694, 853
SfuI	TTCGAA	1 cut(s)	761
SgrAI	CRCCGGYG	1 cut(s)	548
SinI	GGWCC	2 cut(s)	184, 790
SmiMI	CAYNNNNRTG	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	6 cut(s)	381, 425, 495, 541, 556, 1065
SspI	AATATT	1 cut(s)	947
SspMI	CTAG	4 cut(s)	285, 599, 891, 974
StyD4I	CCNGG	6 cut(s)	156, 219, 295, 467, 825, 930
TaaI	ACNGT	5 cut(s)	362, 678, 794, 897, 1046
TaiI	ACGT	3 cut(s)	93, 506, 999
TaqI	TCGA	1 cut(s)	761
TasI	AATT	6 cut(s)	381, 425, 495, 541, 556, 1065
TfiI	GAWTC	3 cut(s)	267, 873, 939
Tru1I	TTAA	3 cut(s)	371, 441, 458
Tru9I	TTAA	3 cut(s)	371, 441, 458
TscAI	CASTG	2 cut(s)	60, 689
TseFI	GTSAC	3 cut(s)	313, 678, 997
TseI	GCWGC	5 cut(s)	163, 608, 611, 725, 769
Tsp45I	GTSAC	3 cut(s)	313, 678, 997
TspDTI	ATGAA	5 cut(s)	118, 254, 369, 732, 998
TspRI	CASTG	2 cut(s)	60, 689
Van91I	CCANNNNNTGG	1 cut(s)	279
Vha464I	CTTAAG	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	184, 790
XapI	RAATTY	2 cut(s)	425, 556
XbaI	TCTAGA	2 cut(s)	284, 890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	4 cut(s)	285, 599, 891, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.