Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

5728003 .. 5729827

Gene Structure 1825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCATTCCGATTAGGCATAACCCTGCTACTTGTTCTTATCTGCACTTCTGTGACAAGCAGTAGAGCTGCCAACTCACGGCACCGTAACACTTCTTCCCTCCACCGGAGCAGTTTTCCGGCAGGTTTCGTGTTTGGGACAGCTTCATCAGCTTACCAGTACGAAGGTGCTGCAAATGAAGGTGGTAGAGGTCCAAGTATATGGGACACATACACTCGCAAGTATCCCGGTCTTGTACCCTATGTTACACTCTTTCATTGGGATACCCCTCAAGCTTTGGAAGATGAATTCGGTGGCTTCCTTAACCCTAAAATTGTGGACCATTTCAAGGACTATGCAAATCTGTGCTATAAAGAATTTGGTGACAGAGTTAAGCACTGGATCACGTTAAATGAGCCATGGAGCTACTCCAATGGTGGTTATGTGATTGGAACATTTGCACCAACCCGATGTTCTGATTGGCAAAACCTAAATTGCACCGGTGGAGATTCAGGGACTGAGCCATACTTGGCGTCACATTACCAACTTCTAGCTCATGCAGCCGCCGTAAAATTGTACAGAGACAAATATCAGGCAGCACAGAAGGGCGTGATTGGAATAACACTACTATCATATTGGTTCGTGCCATATTCTGATGCAAAGTGGGATGTAGATGCTGCAGAACGTGCATTGGATTTTATGTATGGATGGTATGTAGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0004565 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0015925 GO:0015926 GO:0016143 GO:0016145 GO:0016787 GO:0016798 GO:0019137 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0033907 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0047701 GO:0050896 GO:0071704 GO:0080083 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00380 ko00460 ko00500 ko00940 ko01100 ko01110 map00380 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

234

Amino Acids

26.28

Weight (kDa)

6.64

Isoelectric Point (pI)

24.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	36 - 74	2.2e-12	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	77 - 232	4.2e-45	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	81
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	287, 356
AcyI	GRCGYC	1 cut(s)	512
AfaI	GTAC	3 cut(s)	161, 237, 557
AfiI	CCNNNNNNNGG	3 cut(s)	78, 105, 328
AgeI	ACCGGT	1 cut(s)	479
AgsI	TTSAA	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	436, 468
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	7 cut(s)	68, 143, 152, 275, 405, 533, 698
AluI	AGCT	7 cut(s)	68, 143, 152, 275, 405, 533, 698
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	1 cut(s)	389
AlwNI	CAGNNNCTG	1 cut(s)	497
ApeKI	GCWGC	5 cut(s)	68, 170, 539, 575, 656
ApoI	RAATTY	2 cut(s)	287, 356
AsiGI	ACCGGT	1 cut(s)	479
AspS9I	GGNCC	2 cut(s)	191, 319
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	191, 319
BanI	GGYRCC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	79, 111
BbvI	GCAGC	5 cut(s)	55, 157, 551, 587, 643
BccI	CCATC	1 cut(s)	681
BceAI	ACGGC	2 cut(s)	95, 530
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciVI	GTATCC	2 cut(s)	234, 256
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	657
BfuAI	ACCTGC	1 cut(s)	113
BfuI	GTATCC	2 cut(s)	234, 256
BisI	GCNGC	6 cut(s)	69, 171, 540, 543, 576, 657
BlsI	GCNGC	6 cut(s)	70, 172, 541, 544, 577, 658
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	2 cut(s)	191, 319
BmgT120I	GGNCC	2 cut(s)	191, 319
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	625, 643
BpuEI	CTTGAG	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	398
BsaWI	WCCGGW	2 cut(s)	105, 479
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 105, 328
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	2 cut(s)	157, 383
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	652, 692
BseLI	CCNNNNNNNGG	3 cut(s)	78, 105, 328
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	157, 383
BseXI	GCAGC	5 cut(s)	55, 157, 551, 587, 643
BsgI	GTGCAG	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	81
BshTI	ACCGGT	1 cut(s)	479
BsiSI	CCGG	4 cut(s)	106, 119, 228, 480
BslFI	GGGAC	3 cut(s)	151, 218, 508
BslI	CCNNNNNNNGG	3 cut(s)	78, 105, 328
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	3 cut(s)	151, 218, 508
BsmI	GAATGC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	1 cut(s)	381
Bsp19I	CCATGG	1 cut(s)	398
BspACI	CCGC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	479
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	157, 383
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	1 cut(s)	381
BssNI	GRCGYC	1 cut(s)	512
BssT1I	CCWWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstAUI	TGTACA	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	652, 692
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 539, 665
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	5 cut(s)	55, 157, 551, 587, 643
BstXI	CCANNNNNNTGG	1 cut(s)	201
BsuI	GTATCC	2 cut(s)	234, 256
BtgI	CCRYGG	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	652, 692
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	497
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	191, 319
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	3 cut(s)	160, 236, 556
CspAI	ACCGGT	1 cut(s)	479
CviAII	CATG	2 cut(s)	399, 536
CviQI	GTAC	3 cut(s)	160, 236, 556
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	191, 319
EcoRI	GAATTC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	2 cut(s)	402, 539
FaqI	GGGAC	3 cut(s)	151, 218, 508
FatI	CATG	2 cut(s)	398, 535
Fnu4HI	GCNGC	6 cut(s)	69, 171, 540, 543, 576, 657
FokI	GGATG	2 cut(s)	659, 699
Fsp4HI	GCNGC	6 cut(s)	69, 171, 540, 543, 576, 657
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	6 cut(s)	69, 171, 540, 543, 576, 657
HapII	CCGG	4 cut(s)	106, 119, 228, 480
HgaI	GACGC	1 cut(s)	501
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	2 cut(s)	402, 539
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	1 cut(s)	488
HpaII	CCGG	4 cut(s)	106, 119, 228, 480
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	11, 457, 634
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	3 cut(s)	158, 173, 577
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	2 cut(s)	386, 664
HpyCH4V	TGCA	9 cut(s)	45, 173, 338, 440, 477, 539, 638, 659, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 539, 665
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	2 cut(s)	386, 664
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	2 cut(s)	402, 539
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	108, 402
Lsp1109I	GCAGC	5 cut(s)	55, 157, 551, 587, 643
LweI	GCATC	2 cut(s)	625, 643
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	2 cut(s)	386, 664
MaeIII	GTNAC	5 cut(s)	52, 86, 244, 362, 513
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	2 cut(s)	87, 293
MluCI	AATT	6 cut(s)	287, 312, 356, 472, 551, 700
MnlI	CCTC	3 cut(s)	110, 182, 279
MseI	TTAA	3 cut(s)	303, 372, 389
MslI	CAYNNNNRTG	1 cut(s)	50
MspI	CCGG	4 cut(s)	106, 119, 228, 480
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	3 cut(s)	149, 539, 665
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	398
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	2 cut(s)	402, 539
NlaIV	GGNNCC	1 cut(s)	83
NmuCI	GTSAC	3 cut(s)	52, 362, 513
OliI	CACNNNNGTG	1 cut(s)	50
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	488
PinAI	ACCGGT	1 cut(s)	479
PkrI	GCNGC	6 cut(s)	70, 172, 541, 544, 577, 658
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	2 cut(s)	191, 319
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	497
RsaI	GTAC	3 cut(s)	161, 237, 557
RsaNI	GTAC	3 cut(s)	160, 236, 556
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	303, 372, 389
SatI	GCNGC	6 cut(s)	69, 171, 540, 543, 576, 657
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	2 cut(s)	191, 319
ScrFI	CCNGG	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	625, 643
SfcI	CTRYAG	1 cut(s)	657
SgrAI	CRCCGGYG	1 cut(s)	479
SinI	GGWCC	2 cut(s)	191, 319
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	6 cut(s)	287, 312, 356, 472, 551, 700
SsiI	CCGC	1 cut(s)	543
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	2 cut(s)	389, 667
TasI	AATT	6 cut(s)	287, 312, 356, 472, 551, 700
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	3 cut(s)	303, 372, 389
Tru9I	TTAA	3 cut(s)	303, 372, 389
TscAI	CASTG	1 cut(s)	383
TseFI	GTSAC	3 cut(s)	52, 362, 513
TseI	GCWGC	5 cut(s)	68, 170, 539, 575, 656
Tsp45I	GTSAC	3 cut(s)	52, 362, 513
TspDTI	ATGAA	4 cut(s)	135, 192, 245, 300
TspRI	CASTG	1 cut(s)	383
VpaK11BI	GGWCC	2 cut(s)	191, 319
XapI	RAATTY	2 cut(s)	287, 356
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.