Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011139.1

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1723

Gene Structure 1723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011139.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 283 bp

caagcattttcgggactatgcggagctgtgttacaaggaatttggtgatcgggtaaagcactggatcacgttgagtgagccatgtacatacagtagtggtggttatgcaggtgggtcattggcaccaggaccgtgttctgcgtggcagcagctaaattgcaccggcggggattcgggtactgaaccatatttggtggcacaccacctactcttatctcatgcagctgctgtaaagttgtacaagcagaaatgcactagaatttcccgaatatcaggtcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

93

Amino Acids

10.22

Weight (kDa)

8.65

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	99
Acc36I	ACCTGC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	2 cut(s)	21, 166
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	39, 259
AfaI	GTAC	3 cut(s)	86, 179, 240
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	3 cut(s)	26, 152, 225
AluI	AGCT	3 cut(s)	26, 152, 225
AlwI	GGATC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	228
ApeKI	GCWGC	4 cut(s)	146, 149, 222, 225
ApoI	RAATTY	2 cut(s)	39, 259
ArsI	GACNNNNNNTTYG	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	4 cut(s)	158, 161, 212, 234
BciT130I	CCWGG	1 cut(s)	127
BfaI	CTAG	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	99
BisI	GCNGC	4 cut(s)	147, 150, 223, 226
BlsI	GCNGC	4 cut(s)	148, 151, 224, 227
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	158, 161, 212, 234
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
Bsp1407I	TGTACA	2 cut(s)	84, 238
Bsp143I	GATC	2 cut(s)	47, 64
BspACI	CCGC	2 cut(s)	21, 166
BspLI	GGNNCC	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	162
BsrGI	TGTACA	2 cut(s)	84, 238
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	162
BssMI	GATC	2 cut(s)	47, 64
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	2 cut(s)	93, 133
BstAUI	TGTACA	2 cut(s)	84, 238
BstKTI	GATC	2 cut(s)	50, 67
BstMBI	GATC	2 cut(s)	47, 64
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstV1I	GCAGC	4 cut(s)	158, 161, 212, 234
BtsIMutI	CAGTG	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	99
CaiI	CAGNNNCTG	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	85, 178, 239
CviAII	CATG	2 cut(s)	82, 219
CviJI	RGCY	4 cut(s)	26, 80, 152, 225
CviKI_1	RGCY	4 cut(s)	26, 80, 152, 225
CviQI	GTAC	3 cut(s)	85, 178, 239
DpnI	GATC	2 cut(s)	49, 66
DpnII	GATC	2 cut(s)	47, 64
Eco47I	GGWCC	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	125
FaeI	CATG	2 cut(s)	85, 222
FaiI	YATR	6 cut(s)	19, 83, 89, 106, 188, 220
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	81, 218
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	147, 150, 223, 226
Fsp4HI	GCNGC	4 cut(s)	147, 150, 223, 226
FspBI	CTAG	1 cut(s)	256
GluI	GCNGC	4 cut(s)	147, 150, 223, 226
HapII	CCGG	1 cut(s)	163
Hin1II	CATG	2 cut(s)	85, 222
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	12, 265
HpyCH4III	ACNGT	2 cut(s)	93, 133
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	4 cut(s)	108, 160, 222, 253
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	85, 222
Kzo9I	GATC	2 cut(s)	47, 64
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	47, 94, 112, 139, 176, 259
Lsp1109I	GCAGC	4 cut(s)	158, 161, 212, 234
MaeI	CTAG	1 cut(s)	256
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	2 cut(s)	49, 66
MboI	GATC	2 cut(s)	47, 64
MluCI	AATT	3 cut(s)	39, 155, 259
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
NdeII	GATC	2 cut(s)	47, 64
NlaIII	CATG	2 cut(s)	85, 222
NlaIV	GGNNCC	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	4 cut(s)	148, 151, 224, 227
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	228
PvuII	CAGCTG	1 cut(s)	225
RsaI	GTAC	3 cut(s)	86, 179, 240
RsaNI	GTAC	3 cut(s)	85, 178, 239
SatI	GCNGC	4 cut(s)	147, 150, 223, 226
Sau3AI	GATC	2 cut(s)	47, 64
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	7 cut(s)	28, 72, 113, 154, 208, 227, 278
SgrAI	CRCCGGYG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	129
Sse9I	AATT	3 cut(s)	39, 155, 259
SsiI	CCGC	2 cut(s)	21, 166
SspMI	CTAG	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	93, 133
TaiI	ACGT	1 cut(s)	72
TasI	AATT	3 cut(s)	39, 155, 259
TatI	WGTACW	2 cut(s)	84, 238
TfiI	GAWTC	1 cut(s)	171
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	4 cut(s)	146, 149, 222, 225
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	2 cut(s)	39, 259
XspI	CTAG	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.