Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

83794362 .. 83795265

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAACGCTCAGAGGGTGTGAATAAGGAAGGAATCAAATATTACAACAACCTCATAAACGAGCTTCTAGCCACTGGTTTAAAGCCCTTTGTCACACTCTTCCATTGGGATCTTCCCCAAGCTTTGGAAGATGAATACGAAACCATTTCCAAGAGTACGCAGAGCTATGCTTCAAGGAATTTGGTGATAGAGTTAAGGACTGGAACGAGCCCTGGAACTACGTATGCCAATGGTGGTTATGTAATTGGGACTTTTGCACCCTGCCGAAGTTCTGAATGGCATTGTACCGGTGGAAATTCAGGAACAGAGCCATATTTTGTCTCACACTATCAGCTTCTAGCTCACGCAGCAGCTGTAAAGTTATACAAGGAGAAGTATCAGAAGGGTATGATAGCGATAACAATATTGTCGCATTGGTTTGTGCCCTTTTCTGATGCCAAGCACCACGAAGAAGCTGCTCTACGAGCATTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

159

Amino Acids

17.72

Weight (kDa)

6.15

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	6 - 155	7.6e-28	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	124
AclWI	GGATC	1 cut(s)	117
AcsI	RAATTY	2 cut(s)	178, 295
AfaI	GTAC	2 cut(s)	157, 286
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	7 cut(s)	64, 122, 165, 334, 341, 353, 455
AluI	AGCT	7 cut(s)	64, 122, 165, 334, 341, 353, 455
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	117
AlwNI	CAGNNNCTG	1 cut(s)	353
ApeKI	GCWGC	3 cut(s)	347, 350, 455
ApoI	RAATTY	2 cut(s)	178, 295
AsiGI	ACCGGT	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	212
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BbvI	GCAGC	3 cut(s)	359, 362, 442
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	68, 338
BisI	GCNGC	3 cut(s)	348, 351, 456
BlsI	GCNGC	3 cut(s)	349, 352, 457
Bme1390I	CCNGG	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	424
BsaAI	YACGTR	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	79, 205
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	79, 205
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	3 cut(s)	359, 362, 442
BshTI	ACCGGT	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	212, 426
Bsp143I	GATC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	23
BspPI	GGATC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	79, 205
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 464
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	426
BstSNI	TACGTA	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	359, 362, 442
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	353
Cfr10I	RCCGGY	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	156, 285
CspAI	ACCGGT	1 cut(s)	287
CviQI	GTAC	2 cut(s)	156, 285
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DraI	TTTAAA	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco105I	TACGTA	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	212
FaiI	YATR	7 cut(s)	56, 168, 225, 240, 313, 364, 389
FaqI	GGGAC	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	348, 351, 456
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	348, 351, 456
FspBI	CTAG	2 cut(s)	68, 338
GluI	GCNGC	3 cut(s)	348, 351, 456
HapII	CCGG	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	4 cut(s)	13, 274, 381, 433
Hpy188III	TCNNGA	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	23, 376
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 464
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	7 cut(s)	60, 186, 198, 225, 274, 285, 301
Lsp1109I	GCAGC	3 cut(s)	359, 362, 442
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	2 cut(s)	68, 338
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	4 cut(s)	91, 104, 140, 461
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	2 cut(s)	212, 426
MluCI	AATT	3 cut(s)	178, 243, 295
MnlI	CCTC	2 cut(s)	7, 62
MseI	TTAA	3 cut(s)	80, 194, 475
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	347, 464
NdeII	GATC	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	33
PflMI	CCANNNNNTGG	1 cut(s)	124
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	349, 352, 457
Ppu21I	YACGTR	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	157, 286
RsaNI	GTAC	2 cut(s)	156, 285
SaqAI	TTAA	3 cut(s)	80, 194, 475
SatI	GCNGC	3 cut(s)	348, 351, 456
Sau3AI	GATC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	212, 426
SetI	ASST	9 cut(s)	54, 66, 124, 167, 224, 336, 343, 355, 457
SfaNI	GCATC	1 cut(s)	424
SnaBI	TACGTA	1 cut(s)	222
Sse9I	AATT	3 cut(s)	178, 243, 295
SspI	AATATT	2 cut(s)	41, 405
SspMI	CTAG	2 cut(s)	68, 338
StyD4I	CCNGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	224
TasI	AATT	3 cut(s)	178, 243, 295
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	3 cut(s)	80, 194, 475
Tru9I	TTAA	3 cut(s)	80, 194, 475
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	3 cut(s)	347, 350, 455
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	124
XapI	RAATTY	2 cut(s)	178, 295
XspI	CTAG	2 cut(s)	68, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.