Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

13714770 .. 13715458

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAATATTCACGATCCTTGCTCTTTGGTGTGCTGCTACTCATTGGCTTTGCATTGACAAATAGCAAAGGAACTAATACGGATCCACCTGTTCTTTGCGAATTTCTCAATCGCAGCAGTTTTGAACCAGGGTTCATATTTGGCTCAGGTTCAGCATCTTACCAGGTTAGTATATATATTACAGGTTTAAAGCCGTTTGTAACACTCTTTCATTGGGATGTTCCCCAAGCTTTAGAAGATGAATATGGTGGTTTCTTAAGCCCTCGTATTGTCGATCATTTTAAAGACTATGTAGAACTTTGTTATAAAGAATTTGGTGATCGAGTCAAGCACTGGTTCACGTTAAATGAGCCGCATACTTTTTGTAATATGGGTTATGCTCTTGGGAGTTACGCACCGGGACGCTGCTCTTCTTGGCAAAACCTAAACTGCACCGGTGGAGATTCAGCCATTGAACCATACTTGGTGGCACACCACCTTCTTCTTGCTCATGGAGCAGCTGTAGAATTGTACAAGAACAGATATCAGGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

179

Amino Acids

20.05

Weight (kDa)

6.13

Isoelectric Point (pI)

27.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	3 cut(s)	9, 77, 90
AcsI	RAATTY	2 cut(s)	101, 311
AfaI	GTAC	1 cut(s)	512
AflII	CTTAAG	1 cut(s)	256
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	125, 455, 533
AjnI	CCWGG	2 cut(s)	127, 162
AluBI	AGCT	2 cut(s)	230, 500
AluI	AGCT	2 cut(s)	230, 500
AlwI	GGATC	3 cut(s)	9, 77, 90
ApeKI	GCWGC	4 cut(s)	34, 114, 405, 497
ApoI	RAATTY	2 cut(s)	101, 311
AsiGI	ACCGGT	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	82
BbvI	GCAGC	4 cut(s)	21, 126, 392, 509
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	129, 164
BcnI	CCSGG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	256
BisI	GCNGC	5 cut(s)	35, 115, 353, 406, 498
BlsI	GCNGC	5 cut(s)	36, 116, 354, 407, 499
Bme1390I	CCNGG	3 cut(s)	129, 164, 399
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	3 cut(s)	129, 164, 399
BmsI	GCATC	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	129, 164
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	338
BseXI	GCAGC	4 cut(s)	21, 126, 392, 509
BsgI	GTGCAG	1 cut(s)	415
BshTI	ACCGGT	1 cut(s)	434
BsiSI	CCGG	2 cut(s)	398, 435
BslFI	GGGAC	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	414
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	4 cut(s)	14, 82, 274, 319
BspACI	CCGC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	3 cut(s)	9, 77, 90
BspQI	GCTCTTC	1 cut(s)	415
BspTI	CTTAAG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	434
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	4 cut(s)	14, 82, 274, 319
Bst2UI	CCWGG	2 cut(s)	129, 164
Bst6I	CTCTTC	1 cut(s)	415
BstAFI	CTTAAG	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	510
BstDEI	CTNAG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	4 cut(s)	17, 85, 277, 322
BstMBI	GATC	4 cut(s)	14, 82, 274, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNI	CCWGG	2 cut(s)	129, 164
BstSCI	CCNGG	3 cut(s)	127, 162, 397
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	4 cut(s)	21, 126, 392, 509
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	434
CseI	GACGC	1 cut(s)	411
CsiI	ACCWGGT	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	511
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	1 cut(s)	491
CviJI	RGCY	8 cut(s)	48, 144, 193, 230, 261, 352, 449, 500
CviKI_1	RGCY	8 cut(s)	48, 144, 193, 230, 261, 352, 449, 500
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	4 cut(s)	16, 84, 276, 321
DpnII	GATC	4 cut(s)	14, 82, 274, 319
DraI	TTTAAA	2 cut(s)	189, 283
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	127, 162
EcoRV	GATATC	1 cut(s)	524
FaeI	CATG	1 cut(s)	494
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	1 cut(s)	490
Fnu4HI	GCNGC	5 cut(s)	35, 115, 353, 406, 498
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	5 cut(s)	35, 115, 353, 406, 498
GluI	GCNGC	5 cut(s)	35, 115, 353, 406, 498
HapII	CCGG	2 cut(s)	398, 435
HgaI	GACGC	1 cut(s)	411
Hin1II	CATG	1 cut(s)	494
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	2 cut(s)	324, 443
HpaII	CCGG	2 cut(s)	398, 435
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	1 cut(s)	488
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	2 cut(s)	53, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	1 cut(s)	145
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	1 cut(s)	494
Kzo9I	GATC	4 cut(s)	14, 82, 274, 319
LguI	GCTCTTC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	4 cut(s)	21, 126, 392, 509
LweI	GCATC	1 cut(s)	164
MabI	ACCWGGT	1 cut(s)	162
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	199, 389
MalI	GATC	4 cut(s)	16, 84, 276, 321
MboI	GATC	4 cut(s)	14, 82, 274, 319
MboII	GAAGA	3 cut(s)	248, 402, 473
MflI	RGATCY	1 cut(s)	82
MluCI	AATT	3 cut(s)	101, 311, 506
MlyI	GAGTC	1 cut(s)	333
MnlI	CCTC	1 cut(s)	273
MseI	TTAA	4 cut(s)	188, 257, 282, 344
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	256
MspI	CCGG	2 cut(s)	398, 435
MspR9I	CCNGG	3 cut(s)	129, 164, 399
MvaI	CCWGG	2 cut(s)	129, 164
MwoI	GCNNNNNNNGC	1 cut(s)	494
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	4 cut(s)	14, 82, 274, 319
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	443
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	5 cut(s)	36, 116, 354, 407, 499
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PsiI	TTATAA	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	127, 162
PspGI	CCWGG	2 cut(s)	127, 162
PspN4I	GGNNCC	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	415
SaqAI	TTAA	4 cut(s)	188, 257, 282, 344
SatI	GCNGC	5 cut(s)	35, 115, 353, 406, 498
Sau3AI	GATC	4 cut(s)	14, 82, 274, 319
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	3 cut(s)	129, 164, 399
SexAI	ACCWGGT	1 cut(s)	162
SfaNI	GCATC	1 cut(s)	164
SfcI	CTRYAG	1 cut(s)	501
SgrAI	CRCCGGYG	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	3 cut(s)	101, 311, 506
SsiI	CCGC	1 cut(s)	353
SspI	AATATT	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	127, 162, 397
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	2 cut(s)	273, 322
TasI	AATT	3 cut(s)	101, 311, 506
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	4 cut(s)	188, 257, 282, 344
Tru9I	TTAA	4 cut(s)	188, 257, 282, 344
TscAI	CASTG	1 cut(s)	338
TseI	GCWGC	4 cut(s)	34, 114, 405, 497
TspDTI	ATGAA	4 cut(s)	17, 124, 200, 255
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	338
Vha464I	CTTAAG	1 cut(s)	256
XapI	RAATTY	2 cut(s)	101, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.