Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001711.1

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Forward (+)

131707 .. 134464

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001711.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atggaattccgattaggcataaccctcctacttgttctggtctgtactgctgtgacaagcagtagagctgccaactcacggcaccgtgacacttcttccctccaccggagcagttttccggcaggtttcgtgtttgggacagcttcatcggcttaccagtatgaaggtgctgcaaatgaaggtggtagaggtccaagtatatgggacacatacactcgcaagtatcccggtcttgtaccctatgttacactctttcactgggatacccctcaagctttggaagatgaattcggtggcttccttagccctaaaattgtggaccatttcaaggactatgtaaatctctgctataaagaatttggtgacagagttaagcactggatcacgttaaatgagccatggagctactccaatggtggttatgtgattggaacatttgcaccaacccgatgttctgattggcaaaacttaaattgcacgggtggagattcagggactgagccatacttggcgtcacattaccaacttctagctcatgccaccgccgtaaaattgtacagagacaaatatcaggcatcacagaagggcgtgattggaataacactactatcatattggttcgtgccatattctgatgcaaagtgggatgtagatgctgcagaacgtgcattggattttatgtatggatggtttatggaccccctaattaatggagactatccacgcagcatgcgatatcttgttgcagaccgattacccaaattcacaaaagaagaatccaagttgcttaagggttcatttgattttattggagtaaactactacactgctaactttgcagcctacaaggcaccttgttttaatgctgctcatcctaatgtgaataacccaagctacactacagacgctctcgttaatctttcagtcgagcgtgatggtgttcctattggtccaaagactgctttggattggctctatatttatccagaaggatttcgagagctattgctctacacaaagaacaagtataatgatccagttatctacatcactgaaaatggagttaatgagctgaacgatcccggattatcgcttgaggaagccctaaccgataatcatagaattgactattacgatgcccatctcagttatcttctttcagcaatcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

390

Amino Acids

44.15

Weight (kDa)

5.59

Isoelectric Point (pI)

23.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccB1I	GGYRCC	2 cut(s)	81, 850
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	3 cut(s)	389, 1028, 1073
AcsI	RAATTY	4 cut(s)	5, 287, 356, 761
AcyI	GRCGYC	1 cut(s)	512
AfaI	GTAC	3 cut(s)	46, 237, 557
AfiI	CCNNNNNNNGG	3 cut(s)	78, 105, 328
AflII	CTTAAG	1 cut(s)	788
AgsI	TTSAA	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	436, 468
AluBI	AGCT	8 cut(s)	68, 143, 275, 405, 533, 894, 1003, 1072
AluI	AGCT	8 cut(s)	68, 143, 275, 405, 533, 894, 1003, 1072
Alw26I	GTCTC	2 cut(s)	555, 708
AlwI	GGATC	3 cut(s)	389, 1028, 1073
AlwNI	CAGNNNCTG	1 cut(s)	497
ApeKI	GCWGC	6 cut(s)	68, 170, 656, 726, 839, 866
ApoI	RAATTY	4 cut(s)	5, 287, 356, 761
AseI	ATTAAT	1 cut(s)	708
Asp700I	GAANNNNTTC	1 cut(s)	993
AspS9I	GGNCC	4 cut(s)	191, 319, 697, 950
AsuC2I	CCSGG	2 cut(s)	228, 1083
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	4 cut(s)	191, 319, 697, 950
BanI	GGYRCC	2 cut(s)	81, 850
BbvI	GCAGC	6 cut(s)	55, 157, 643, 738, 851, 853
BccI	CCATC	3 cut(s)	681, 929, 1149
BceAI	ACGGC	2 cut(s)	95, 530
BciVI	GTATCC	2 cut(s)	234, 256
BcnI	CCSGG	2 cut(s)	228, 1083
BcoDI	GTCTC	2 cut(s)	555, 708
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	2 cut(s)	657, 900
BfrI	CTTAAG	1 cut(s)	788
BfuAI	ACCTGC	1 cut(s)	113
BfuI	GTATCC	2 cut(s)	234, 256
BglI	GCCNNNNNGGC	1 cut(s)	848
BisI	GCNGC	6 cut(s)	69, 171, 657, 727, 840, 867
BlsI	GCNGC	6 cut(s)	70, 172, 658, 728, 841, 868
Bme1390I	CCNGG	2 cut(s)	228, 1083
Bme18I	GGWCC	4 cut(s)	191, 319, 697, 950
BmgT120I	GGNCC	4 cut(s)	191, 319, 697, 950
BmiI	GGNNCC	3 cut(s)	83, 699, 852
BmrFI	CCNGG	2 cut(s)	228, 1083
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	4 cut(s)	584, 625, 643, 1126
BmuI	ACTGGG	1 cut(s)	268
Bpu10I	CCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	255, 1115
BpuMI	CCSGG	2 cut(s)	228, 1083
BsaBI	GATNNNNATC	1 cut(s)	1140
BsaHI	GRCGYC	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	398
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 105, 328
Bse1I	ACTGG	4 cut(s)	157, 263, 383, 1037
Bse8I	GATNNNNATC	1 cut(s)	1140
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	3 cut(s)	652, 692, 871
BseJI	GATNNNNATC	1 cut(s)	1140
BseLI	CCNNNNNNNGG	3 cut(s)	78, 105, 328
BseMII	CTCAG	2 cut(s)	489, 1159
BseNI	ACTGG	4 cut(s)	157, 263, 383, 1037
BseXI	GCAGC	6 cut(s)	55, 157, 643, 738, 851, 853
BshNI	GGYRCC	2 cut(s)	81, 850
BsiSI	CCGG	4 cut(s)	106, 119, 228, 1083
BslFI	GGGAC	3 cut(s)	151, 218, 508
BslI	CCNNNNNNNGG	3 cut(s)	78, 105, 328
BsmAI	GTCTC	2 cut(s)	555, 708
BsmFI	GGGAC	3 cut(s)	151, 218, 508
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	381, 1033, 1078
Bsp19I	CCATGG	1 cut(s)	398
BspACI	CCGC	1 cut(s)	543
BspCNI	CTCAG	2 cut(s)	490, 1158
BspLI	GGNNCC	3 cut(s)	83, 699, 852
BspMAI	CTGCAG	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	3 cut(s)	389, 1028, 1073
BspT107I	GGYRCC	2 cut(s)	81, 850
BspTI	CTTAAG	1 cut(s)	788
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	4 cut(s)	157, 263, 383, 1037
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	3 cut(s)	381, 1033, 1078
BssNI	GRCGYC	1 cut(s)	512
BssT1I	CCWWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	512
BstAFI	CTTAAG	1 cut(s)	788
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstAUI	TGTACA	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	731
BstDEI	CTNAG	3 cut(s)	302, 498, 1145
BstDSI	CCRYGG	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	652, 692, 871
BstKTI	GATC	3 cut(s)	384, 1036, 1081
BstMAI	GTCTC	2 cut(s)	555, 708
BstMBI	GATC	3 cut(s)	381, 1033, 1078
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 303, 665, 836, 848
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	2 cut(s)	226, 1081
BstSFI	CTRYAG	2 cut(s)	657, 900
BstV1I	GCAGC	6 cut(s)	55, 157, 643, 738, 851, 853
BstXI	CCANNNNNNTGG	1 cut(s)	201
BsuI	GTATCC	2 cut(s)	234, 256
BtgI	CCRYGG	1 cut(s)	398
BtsCI	GGATG	3 cut(s)	652, 692, 871
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	4 cut(s)	256, 376, 825, 1050
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	731
CaiI	CAGNNNCTG	1 cut(s)	497
Cfr13I	GGNCC	4 cut(s)	191, 319, 697, 950
CseI	GACGC	2 cut(s)	501, 914
Csp6I	GTAC	3 cut(s)	45, 236, 556
CviAII	CATG	3 cut(s)	399, 536, 730
CviQI	GTAC	3 cut(s)	45, 236, 556
DdeI	CTNAG	3 cut(s)	302, 498, 1145
DpnI	GATC	3 cut(s)	383, 1035, 1080
DpnII	GATC	3 cut(s)	381, 1033, 1078
Eco130I	CCWWGG	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	737
Eco47I	GGWCC	4 cut(s)	191, 319, 697, 950
EcoRI	GAATTC	2 cut(s)	5, 287
EcoRV	GATATC	1 cut(s)	737
EcoT14I	CCWWGG	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	3 cut(s)	402, 539, 733
FaqI	GGGAC	3 cut(s)	151, 218, 508
FatI	CATG	3 cut(s)	398, 535, 729
Fnu4HI	GCNGC	6 cut(s)	69, 171, 657, 727, 840, 867
FokI	GGATG	3 cut(s)	659, 699, 858
Fsp4HI	GCNGC	6 cut(s)	69, 171, 657, 727, 840, 867
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	6 cut(s)	69, 171, 657, 727, 840, 867
HapII	CCGG	4 cut(s)	106, 119, 228, 1083
HgaI	GACGC	2 cut(s)	501, 914
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	3 cut(s)	402, 539, 733
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	2 cut(s)	488, 776
HpaII	CCGG	4 cut(s)	106, 119, 228, 1083
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	319, 817
Hpy188I	TCNGA	3 cut(s)	11, 457, 634
Hpy188III	TCNNGA	2 cut(s)	986, 998
Hpy8I	GTNNAC	2 cut(s)	319, 817
HpyAV	CCTTC	4 cut(s)	158, 173, 577, 983
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	2 cut(s)	386, 664
HpyCH4V	TGCA	8 cut(s)	173, 440, 477, 638, 659, 668, 746, 839
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 303, 665, 836, 848
HpyF3I	CTNAG	3 cut(s)	302, 498, 1145
HpySE526I	ACGT	2 cut(s)	386, 664
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	3 cut(s)	402, 539, 733
Kzo9I	GATC	3 cut(s)	381, 1033, 1078
LmnI	GCTCC	2 cut(s)	108, 402
Lsp1109I	GCAGC	6 cut(s)	55, 157, 643, 738, 851, 853
LweI	GCATC	4 cut(s)	584, 625, 643, 1126
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	2 cut(s)	386, 664
MaeIII	GTNAC	5 cut(s)	52, 86, 244, 362, 513
MalI	GATC	3 cut(s)	383, 1035, 1080
MboI	GATC	3 cut(s)	381, 1033, 1078
MboII	GAAGA	4 cut(s)	87, 293, 785, 1145
MluCI	AATT	9 cut(s)	5, 287, 312, 356, 472, 551, 705, 761, 1122
MnlI	CCTC	5 cut(s)	35, 110, 182, 279, 1090
MroXI	GAANNNNTTC	1 cut(s)	993
MseI	TTAA	8 cut(s)	372, 389, 470, 708, 789, 861, 915, 1065
MslI	CAYNNNNRTG	1 cut(s)	876
MspCI	CTTAAG	1 cut(s)	788
MspI	CCGG	4 cut(s)	106, 119, 228, 1083
MspR9I	CCNGG	2 cut(s)	228, 1083
MwoI	GCNNNNNNNGC	5 cut(s)	149, 303, 665, 836, 848
NciI	CCSGG	2 cut(s)	228, 1083
NcoI	CCATGG	1 cut(s)	398
NdeII	GATC	3 cut(s)	381, 1033, 1078
NlaIII	CATG	3 cut(s)	402, 539, 733
NlaIV	GGNNCC	3 cut(s)	83, 699, 852
NmuCI	GTSAC	4 cut(s)	52, 86, 362, 513
NspI	RCATGY	1 cut(s)	733
PaeI	GCATGC	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	993
PfeI	GAWTC	2 cut(s)	488, 776
PfoI	TCCNGGA	1 cut(s)	1081
PkrI	GCNGC	6 cut(s)	70, 172, 658, 728, 841, 868
PshBI	ATTAAT	1 cut(s)	708
PspN4I	GGNNCC	3 cut(s)	83, 699, 852
PspPI	GGNCC	4 cut(s)	191, 319, 697, 950
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	497
RsaI	GTAC	3 cut(s)	46, 237, 557
RsaNI	GTAC	3 cut(s)	45, 236, 556
RseI	CAYNNNNRTG	1 cut(s)	876
SaqAI	TTAA	8 cut(s)	372, 389, 470, 708, 789, 861, 915, 1065
SatI	GCNGC	6 cut(s)	69, 171, 657, 727, 840, 867
Sau3AI	GATC	3 cut(s)	381, 1033, 1078
Sau96I	GGNCC	4 cut(s)	191, 319, 697, 950
ScrFI	CCNGG	2 cut(s)	228, 1083
SfaNI	GCATC	4 cut(s)	584, 625, 643, 1126
SfcI	CTRYAG	2 cut(s)	657, 900
SinI	GGWCC	4 cut(s)	191, 319, 697, 950
SmiMI	CAYNNNNRTG	1 cut(s)	876
SmlI	CTYRAG	3 cut(s)	270, 788, 1094
SmoI	CTYRAG	3 cut(s)	270, 788, 1094
SphI	GCATGC	1 cut(s)	733
Sse9I	AATT	9 cut(s)	5, 287, 312, 356, 472, 551, 705, 761, 1122
SsiI	CCGC	1 cut(s)	543
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	2 cut(s)	226, 1081
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	2 cut(s)	389, 667
TaqI	TCGA	2 cut(s)	927, 997
TaqII	GACCGA	1 cut(s)	765
TasI	AATT	9 cut(s)	5, 287, 312, 356, 472, 551, 705, 761, 1122
TatI	WGTACW	2 cut(s)	44, 555
TfiI	GAWTC	2 cut(s)	488, 776
Tru1I	TTAA	8 cut(s)	372, 389, 470, 708, 789, 861, 915, 1065
Tru9I	TTAA	8 cut(s)	372, 389, 470, 708, 789, 861, 915, 1065
TscAI	CASTG	4 cut(s)	263, 383, 832, 1057
TseFI	GTSAC	4 cut(s)	52, 86, 362, 513
TseI	GCWGC	6 cut(s)	68, 170, 656, 726, 839, 866
Tsp45I	GTSAC	4 cut(s)	52, 86, 362, 513
TspDTI	ATGAA	5 cut(s)	135, 177, 192, 300, 786
TspRI	CASTG	4 cut(s)	263, 383, 832, 1057
Vha464I	CTTAAG	1 cut(s)	788
VpaK11BI	GGWCC	4 cut(s)	191, 319, 697, 950
VspI	ATTAAT	1 cut(s)	708
XapI	RAATTY	4 cut(s)	5, 287, 356, 761
XceI	RCATGY	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	993
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.