Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

79600296 .. 79600514

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG509600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGACATTCAATGAGCCTGGAGTGGTGGTTGCTCTTGGCTATGACAATGGGATGAATCCTCCGGCACGGTGCTCCAAAGCTTATGGAAATTGCACAGCTGGGAATTCACGAACTGAGCCTTACATTGTTGCTCATCATTTGATTTTGTCACATGCAGCTGCTGTTCAGAGATACCGTGAAAAGTATCAGAAAACACATAATGATCGCCCTCAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

72

Amino Acids

8.02

Weight (kDa)

9.1

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	1 - 66	8.3e-10	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	3 cut(s)	80, 98, 158
AluI	AGCT	3 cut(s)	80, 98, 158
Alw21I	GWGCWC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	155, 158
ApoI	RAATTY	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	145, 167
BciT130I	CCWGG	1 cut(s)	18
BisI	GCNGC	2 cut(s)	156, 159
BlsI	GCNGC	2 cut(s)	157, 160
Bme1390I	CCNGG	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bse21I	CCTNAGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	145, 167
BseYI	CCCAGC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	106
BssMI	GATC	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	69, 176
BstDEI	CTNAG	2 cut(s)	114, 210
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	145, 167
Bsu36I	CCTNAGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	161
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	6 cut(s)	16, 39, 80, 98, 118, 158
CviKI_1	RGCY	6 cut(s)	16, 39, 80, 98, 118, 158
DdeI	CTNAG	2 cut(s)	114, 210
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	155
FaiI	YATR	4 cut(s)	42, 84, 153, 198
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	156, 159
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	156, 159
GluI	GCNGC	2 cut(s)	156, 159
GsaI	CCCAGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	39
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	168, 189
Hpy188III	TCNNGA	1 cut(s)	108
HpyCH4III	ACNGT	2 cut(s)	69, 176
HpyCH4V	TGCA	2 cut(s)	93, 155
HpyF3I	CTNAG	2 cut(s)	114, 210
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	5 cut(s)	3, 30, 75, 84, 197
Lsp1109I	GCAGC	2 cut(s)	145, 167
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	2 cut(s)	88, 103
MnlI	CCTC	2 cut(s)	69, 219
MspA1I	CMGCKG	2 cut(s)	98, 158
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	147
NspI	RCATGY	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	157, 160
Psp6I	CCWGG	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	161
PvuII	CAGCTG	2 cut(s)	98, 158
SatI	GCNGC	2 cut(s)	156, 159
Sau3AI	GATC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	4 cut(s)	82, 100, 160, 216
SgeI	CNNG	9 cut(s)	29, 30, 47, 74, 78, 111, 120, 164, 188
Sse9I	AATT	2 cut(s)	88, 103
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	69, 176
TasI	AATT	2 cut(s)	88, 103
TfiI	GAWTC	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	2 cut(s)	155, 158
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	68
XapI	RAATTY	1 cut(s)	103
XceI	RCATGY	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.