Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

1658760 .. 1659047

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g01900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGATTTTGAAATGTGTAAACACAGGTATCACTTTAAAGACTATGCAGAGCCTTGTTTTATGCATTTTGGTGATCGAGTAAAGCACTGGCTCACTTTGAATGAGCCATTTACCGTAAGTAATCAAGGTTATGCAATCGGGACACATGCACCAGGACGATGCTCTGCTTGGCAAAAATTAAACTGCACTGGTGGAAATTCCGCTGTTGAACCATATTTGGTGACACATCACCAACTCCTTGCTCATGCATCCACTGTAAAGTTGTACAAGACTAAATATCAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

96

Amino Acids

10.99

Weight (kDa)

8.72

Isoelectric Point (pI)

21.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	11 - 94	4.1e-20	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	11, 100, 209
AjnI	CCWGG	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	196
AsuHPI	GGTGA	3 cut(s)	83, 221, 232
BaeI	ACNNNNGTAYC	2 cut(s)	11, 44
BciT130I	CCWGG	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	2 cut(s)	149, 257
Bse1I	ACTGG	2 cut(s)	92, 193
BseBI	CCWGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	248
BseNI	ACTGG	2 cut(s)	92, 193
BsgI	GTGCAG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	154
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	92, 193
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	115, 256
BstAUI	TGTACA	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	248
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	248
BtsIMutI	CAGTG	3 cut(s)	85, 186, 252
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	146, 245
CviJI	RGCY	3 cut(s)	52, 91, 106
CviKI_1	RGCY	3 cut(s)	52, 91, 106
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DraI	TTTAAA	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	151
EcoT22I	ATGCAT	2 cut(s)	66, 250
FaeI	CATG	2 cut(s)	149, 248
FaiI	YATR	6 cut(s)	45, 62, 132, 147, 214, 246
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	145, 244
FokI	GGATG	1 cut(s)	235
Hin1II	CATG	2 cut(s)	149, 248
HphI	GGTGA	3 cut(s)	83, 221, 232
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	115, 256
HpyCH4V	TGCA	6 cut(s)	47, 64, 134, 149, 186, 248
Hsp92II	CATG	2 cut(s)	149, 248
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	10, 73, 138, 165, 174, 266
LweI	GCATC	2 cut(s)	149, 257
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MluCI	AATT	2 cut(s)	176, 196
Mph1103I	ATGCAT	2 cut(s)	66, 250
MseI	TTAA	3 cut(s)	36, 179, 286
MslI	CAYNNNNRTG	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	149, 248
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	2 cut(s)	66, 250
NspI	RCATGY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	36, 179, 286
Sau3AI	GATC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	3 cut(s)	29, 130, 285
SfaNI	GCATC	2 cut(s)	149, 257
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	176, 196
SsiI	CCGC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	115, 256
TaqI	TCGA	1 cut(s)	76
TasI	AATT	2 cut(s)	176, 196
TatI	WGTACW	1 cut(s)	264
Tru1I	TTAA	3 cut(s)	36, 179, 286
Tru9I	TTAA	3 cut(s)	36, 179, 286
TscAI	CASTG	3 cut(s)	92, 193, 259
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspRI	CASTG	3 cut(s)	92, 193, 259
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	149
Zsp2I	ATGCAT	2 cut(s)	66, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.