Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

1147803 .. 1152780

Gene Structure 4978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAGCCTGGAGTGGTGGTTGCTCTGCCATGACAATGGGATGAATCCTCCAGCACGGTGCTCCAAAGCTTATGCAAATTGCACAGCTGGGATTTCACAAACTGAGCCTTACATTGCTGCTCATCATTTGATTTTGTCACATGCAGCTGCTGTTCAGAGATACCGTGACAAGTATCAGAAAACACAAAAAGAGTGGTCTTGCTCCCCCCCGGGAAACGCAGCCTATGTCCATGCATCTCCGGTGTCAGAGCGTCGTGCTGGAGAAGATGACTCGCCTCATGATGAAGCCACTCCGGATGATGATGAAGACTACTTGAAAGAGGATGATGATGATATGTTCAAAAAAAAGAATGATGATGATGAAGAGTGCTTGGAAGACGATGATGATGCCTTCGATGATGAAGACAGCTTGGACGACGATGAGATTCCTTGGCTTCATTATGATGATGAAAATGGAGACTGTTCCTTGGACGATGACGATGATGATGAAGACCGCTTGGACAATGATGAGATTCCTTGGCTTCATTATGATGGTGAAGATGAAGACTGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

184

Amino Acids

21.13

Weight (kDa)

4.05

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	316, 340
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	4 cut(s)	68, 86, 146, 408
AluI	AGCT	4 cut(s)	68, 86, 146, 408
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	450
AlwNI	CAGNNNCTG	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	208
Aor13HI	TCCGGA	1 cut(s)	292
ApeKI	GCWGC	4 cut(s)	116, 143, 146, 218
AsuC2I	CCSGG	2 cut(s)	209, 210
AsuHPI	GGTGA	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	208
BbsI	GAAGAC	5 cut(s)	312, 381, 408, 495, 549
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	4 cut(s)	103, 133, 155, 230
BccI	CCATC	1 cut(s)	524
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	1 cut(s)	8
BcnI	CCSGG	2 cut(s)	209, 210
BcoDI	GTCTC	1 cut(s)	450
BisI	GCNGC	4 cut(s)	117, 144, 147, 219
BlsI	GCNGC	4 cut(s)	118, 145, 148, 220
Bme1390I	CCNGG	3 cut(s)	8, 209, 210
BmeT110I	CYCGRG	1 cut(s)	208
BmrFI	CCNGG	3 cut(s)	8, 209, 210
BmsI	GCATC	2 cut(s)	242, 376
BpiI	GAAGAC	5 cut(s)	312, 381, 408, 495, 549
BpmI	CTGGAG	3 cut(s)	29, 33, 279
BpuMI	CCSGG	2 cut(s)	209, 210
BsaJI	CCNNGG	5 cut(s)	207, 208, 428, 465, 515
BsaWI	WCCGGW	2 cut(s)	238, 292
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	5 cut(s)	207, 208, 428, 465, 515
BseGI	GGATG	3 cut(s)	45, 301, 328
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	4 cut(s)	103, 133, 155, 230
BseYI	CCCAGC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	3 cut(s)	209, 239, 293
BsmAI	GTCTC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	292
BspACI	CCGC	1 cut(s)	493
BspCNI	CTCAG	1 cut(s)	94
BspEI	TCCGGA	1 cut(s)	292
BspHI	TCATGA	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	111
BssECI	CCNNGG	5 cut(s)	207, 208, 428, 465, 515
BssT1I	CCWWGG	3 cut(s)	428, 465, 515
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	4 cut(s)	57, 164, 461, 548
Bst6I	CTCTTC	1 cut(s)	357
BstDEI	CTNAG	2 cut(s)	102, 552
BstF5I	GGATG	3 cut(s)	45, 301, 328
BstMAI	GTCTC	1 cut(s)	450
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	6, 207, 208
BstV1I	GCAGC	4 cut(s)	103, 133, 155, 230
BstV2I	GAAGAC	5 cut(s)	312, 381, 408, 495, 549
BstXI	CCANNNNNNTGG	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	45, 301, 328
CaiI	CAGNNNCTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	277
Cfr9I	CCCGGG	1 cut(s)	208
CseI	GACGC	1 cut(s)	239
CspCI	CAANNNNNGTGG	2 cut(s)	173, 208
CviAII	CATG	4 cut(s)	29, 140, 230, 278
DdeI	CTNAG	2 cut(s)	102, 552
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	3 cut(s)	428, 465, 515
Eco88I	CYCGRG	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	3 cut(s)	428, 465, 515
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	3 cut(s)	428, 465, 515
FaeI	CATG	4 cut(s)	32, 143, 233, 281
FaiI	YATR	9 cut(s)	30, 72, 141, 225, 231, 279, 335, 441, 528
FatI	CATG	4 cut(s)	28, 139, 229, 277
Fnu4HI	GCNGC	4 cut(s)	117, 144, 147, 219
FokI	GGATG	3 cut(s)	52, 308, 335
Fsp4HI	GCNGC	4 cut(s)	117, 144, 147, 219
GluI	GCNGC	4 cut(s)	117, 144, 147, 219
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	3 cut(s)	29, 33, 279
HapII	CCGG	3 cut(s)	209, 239, 293
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	32, 143, 233, 281
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	4 cut(s)	43, 269, 424, 511
HpaII	CCGG	3 cut(s)	209, 239, 293
HphI	GGTGA	1 cut(s)	545
Hpy188I	TCNGA	3 cut(s)	156, 177, 247
Hpy188III	TCNNGA	2 cut(s)	278, 293
Hpy99I	CGWCG	2 cut(s)	255, 419
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	4 cut(s)	57, 164, 461, 548
HpyCH4V	TGCA	4 cut(s)	74, 81, 143, 233
HpyF3I	CTNAG	2 cut(s)	102, 552
Hsp92II	CATG	4 cut(s)	32, 143, 233, 281
Kpn2I	TCCGGA	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	65, 206
LpnPI	CCDG	7 cut(s)	20, 63, 72, 222, 243, 252, 306
Lsp1109I	GCAGC	4 cut(s)	103, 133, 155, 230
LweI	GCATC	2 cut(s)	242, 376
MaeIII	GTNAC	2 cut(s)	135, 164
MboII	GAAGA	8 cut(s)	275, 317, 374, 386, 413, 500, 548, 554
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	3 cut(s)	57, 285, 313
Mph1103I	ATGCAT	1 cut(s)	235
MroI	TCCGGA	1 cut(s)	292
MslI	CAYNNNNRTG	3 cut(s)	33, 441, 528
MspA1I	CMGCKG	2 cut(s)	86, 146
MspI	CCGG	3 cut(s)	209, 239, 293
MspR9I	CCNGG	3 cut(s)	8, 209, 210
MvaI	CCWGG	1 cut(s)	8
NciI	CCSGG	2 cut(s)	209, 210
NlaIII	CATG	4 cut(s)	32, 143, 233, 281
NmuCI	GTSAC	2 cut(s)	135, 164
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	143
PagI	TCATGA	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	43, 424, 511
PkrI	GCNGC	4 cut(s)	118, 145, 148, 220
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	6
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	149
PvuII	CAGCTG	2 cut(s)	86, 146
RseI	CAYNNNNRTG	3 cut(s)	33, 441, 528
SatI	GCNGC	4 cut(s)	117, 144, 147, 219
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	3 cut(s)	8, 209, 210
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	4 cut(s)	70, 88, 148, 410
SfaNI	GCATC	2 cut(s)	242, 376
SmaI	CCCGGG	1 cut(s)	210
SmiMI	CAYNNNNRTG	3 cut(s)	33, 441, 528
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	493
StyD4I	CCNGG	3 cut(s)	6, 207, 208
StyI	CCWWGG	3 cut(s)	428, 465, 515
TaaI	ACNGT	4 cut(s)	57, 164, 461, 548
TaqI	TCGA	1 cut(s)	393
TasI	AATT	1 cut(s)	76
TfiI	GAWTC	3 cut(s)	43, 424, 511
TseFI	GTSAC	2 cut(s)	135, 164
TseI	GCWGC	4 cut(s)	116, 143, 146, 218
Tsp45I	GTSAC	2 cut(s)	135, 164
TspMI	CCCGGG	1 cut(s)	208
XceI	RCATGY	1 cut(s)	143
XmaI	CCCGGG	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.