Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001711.1

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Forward (+)

14921 .. 16816

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001711.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgctggatgtatatacagcaagcattttcgatcaggactatgcggagctatgttacaaggaatttggtgatcgggtaaagcactggatcacgttgaatgagccatggacattcagtaatcgtggtcatgccggcagatcgttggcaccaggatggtgttctacttggcagaagctaaactgcaccggcggggactccagtagtgaaccatatttggtggcacaccacctactcctttctcatgcagctgcggcaatagccgaaattgtcggctccacggtcgacctctaccggcgaggccaaaatgtcaacttaaacgccctcaaaactgtcgcgtgcagcaagtacgacctcgcacatgtgtcgaaattggtggagacactggcggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

130

Amino Acids

14.42

Weight (kDa)

6.03

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	1 cut(s)	335
AciI	CCGC	4 cut(s)	44, 189, 251, 386
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	62
AfaI	GTAC	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	3 cut(s)	49, 175, 248
AluI	AGCT	3 cut(s)	49, 175, 248
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	245, 248, 339
ApoI	RAATTY	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	145
BbvI	GCAGC	3 cut(s)	235, 257, 351
BccI	CCATC	1 cut(s)	147
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	391
BisI	GCNGC	4 cut(s)	246, 249, 252, 340
BlsI	GCNGC	4 cut(s)	247, 250, 253, 341
Bme1390I	CCNGG	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	147, 274
BmrFI	CCNGG	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	104, 276
Bse118I	RCCGGY	3 cut(s)	131, 185, 291
Bse1I	ACTGG	3 cut(s)	89, 198, 387
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	104, 276
BseGI	GGATG	2 cut(s)	13, 158
BseNI	ACTGG	3 cut(s)	89, 198, 387
BseXI	GCAGC	3 cut(s)	235, 257, 351
BsgI	GTGCAG	2 cut(s)	166, 358
Bsh1236I	CGCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	3 cut(s)	132, 186, 292
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	31, 70, 87, 137
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	4 cut(s)	44, 189, 251, 386
BspANI	GGCC	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	147, 274
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	145
BsrFI	RCCGGY	3 cut(s)	131, 185, 291
BsrI	ACTGG	3 cut(s)	89, 198, 387
BssAI	RCCGGY	3 cut(s)	131, 185, 291
BssECI	CCNNGG	2 cut(s)	104, 276
BssMI	GATC	4 cut(s)	31, 70, 87, 137
BssT1I	CCWWGG	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	280, 331
BstC8I	GCNNGC	3 cut(s)	22, 133, 337
BstDSI	CCRYGG	2 cut(s)	104, 276
BstF5I	GGATG	2 cut(s)	13, 158
BstFNI	CGCG	1 cut(s)	335
BstKTI	GATC	4 cut(s)	34, 73, 90, 140
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	4 cut(s)	31, 70, 87, 137
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 257
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	148
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	3 cut(s)	235, 257, 351
BsuRI	GGCC	1 cut(s)	300
BtgI	CCRYGG	2 cut(s)	104, 276
BtsCI	GGATG	2 cut(s)	13, 158
BtsIMutI	CAGTG	2 cut(s)	82, 380
Cac8I	GCNNGC	3 cut(s)	22, 133, 337
Cfr10I	RCCGGY	3 cut(s)	131, 185, 291
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	4 cut(s)	105, 128, 242, 359
CviJI	RGCY	7 cut(s)	49, 103, 175, 248, 260, 273, 300
CviKI_1	RGCY	7 cut(s)	49, 103, 175, 248, 260, 273, 300
CviQI	GTAC	1 cut(s)	346
DpnI	GATC	4 cut(s)	33, 72, 89, 139
DpnII	GATC	4 cut(s)	31, 70, 87, 137
Eco130I	CCWWGG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	4 cut(s)	108, 131, 245, 362
FaiI	YATR	9 cut(s)	13, 15, 42, 52, 106, 129, 211, 243, 360
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	4 cut(s)	104, 127, 241, 358
FauI	CCCGC	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	4 cut(s)	246, 249, 252, 340
FokI	GGATG	2 cut(s)	20, 165
Fsp4HI	GCNGC	4 cut(s)	246, 249, 252, 340
FspBI	CTAG	1 cut(s)	391
GluI	GCNGC	4 cut(s)	246, 249, 252, 340
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	3 cut(s)	132, 186, 292
Hin1II	CATG	4 cut(s)	108, 131, 245, 362
HincII	GTYRAC	2 cut(s)	283, 310
HindII	GTYRAC	2 cut(s)	283, 310
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	3 cut(s)	132, 186, 292
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	206, 283, 310
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	3 cut(s)	206, 283, 310
HpyCH4III	ACNGT	2 cut(s)	280, 331
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	183, 245, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 257
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	4 cut(s)	108, 131, 245, 362
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	31, 70, 87, 137
LmnI	GCTCC	2 cut(s)	46, 278
LpnPI	CCDG	9 cut(s)	20, 70, 135, 145, 162, 199, 211, 305, 368
Lsp1109I	GCAGC	3 cut(s)	235, 257, 351
MaeI	CTAG	1 cut(s)	391
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	4 cut(s)	33, 72, 89, 139
MboI	GATC	4 cut(s)	31, 70, 87, 137
MluCI	AATT	3 cut(s)	62, 264, 368
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	4 cut(s)	290, 296, 332, 362
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	151
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	3 cut(s)	132, 186, 292
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	251, 257
NaeI	GCCGGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	31, 70, 87, 137
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	4 cut(s)	108, 131, 245, 362
NlaIV	GGNNCC	2 cut(s)	147, 274
NspI	RCATGY	1 cut(s)	362
PciI	ACATGT	1 cut(s)	358
PdiI	GCCGGC	1 cut(s)	133
PkrI	GCNGC	4 cut(s)	247, 250, 253, 341
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	147, 274
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	151
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	4 cut(s)	246, 249, 252, 340
Sau3AI	GATC	4 cut(s)	31, 70, 87, 137
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	7 cut(s)	51, 95, 177, 231, 250, 288, 354
SgrAI	CRCCGGYG	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	151
Sse9I	AATT	3 cut(s)	62, 264, 368
SsiI	CCGC	4 cut(s)	44, 189, 251, 386
SspMI	CTAG	1 cut(s)	391
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	2 cut(s)	280, 331
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	30, 282, 365
TasI	AATT	3 cut(s)	62, 264, 368
TauI	GCSGC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	2 cut(s)	89, 387
TseI	GCWGC	3 cut(s)	245, 248, 339
TspRI	CASTG	2 cut(s)	89, 387
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.