Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

13678116 .. 13678645

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCCGTTTGTAACACTCTTTCATTGGGATGTTCCCCAAGCTTTAGAAGATGAATATGGTGGTTTCTTAAGCCCTCGTATTGTCGATCATTTTAAAGACTATGTAGAACTTTGTTATAAAGAATTTGGTGATCGAGTCAAGCACTGGTTCACGTTAAATGAGCCGCATACTTTTTGTAATATGGGTTATGCTCTTGGGAGTTACGCACCGGGACGCTGCTCTTCTTGGCAAAACCTAAACTGCACCGGTGGAGATTCAGCCATTGAACCATACTTGGTGGCACACCACCTTCTTCTTGCTCATGGAGCAGCTGTAGAATTGTACAAGAACAGATATCAGGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

116

Amino Acids

13.24

Weight (kDa)

5.71

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AciI	CCGC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	1 cut(s)	323
AflII	CTTAAG	1 cut(s)	67
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	266, 344
AluBI	AGCT	2 cut(s)	41, 311
AluI	AGCT	2 cut(s)	41, 311
ApeKI	GCWGC	2 cut(s)	216, 308
ApoI	RAATTY	1 cut(s)	122
AsiGI	ACCGGT	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	203, 320
BcnI	CCSGG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	67
BisI	GCNGC	3 cut(s)	164, 217, 309
BlsI	GCNGC	3 cut(s)	165, 218, 310
Bme1390I	CCNGG	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	203, 320
BsgI	GTGCAG	1 cut(s)	226
BshTI	ACCGGT	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	209, 246
BslFI	GGGAC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	225
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	85, 130
BspACI	CCGC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	226
BspTI	CTTAAG	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	245
BssMI	GATC	2 cut(s)	85, 130
Bst6I	CTCTTC	1 cut(s)	226
BstAFI	CTTAAG	1 cut(s)	67
BstAUI	TGTACA	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	2 cut(s)	88, 133
BstMBI	GATC	2 cut(s)	85, 130
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	203, 320
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	245
CseI	GACGC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	322
CspAI	ACCGGT	1 cut(s)	245
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	5 cut(s)	41, 72, 163, 260, 311
CviKI_1	RGCY	5 cut(s)	41, 72, 163, 260, 311
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	2 cut(s)	87, 132
DpnII	GATC	2 cut(s)	85, 130
DraI	TTTAAA	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	335
EcoRV	GATATC	1 cut(s)	335
FaeI	CATG	1 cut(s)	305
FaiI	YATR	8 cut(s)	57, 102, 117, 168, 182, 189, 271, 303
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	164, 217, 309
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	164, 217, 309
GluI	GCNGC	3 cut(s)	164, 217, 309
HapII	CCGG	2 cut(s)	209, 246
HgaI	GACGC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	2 cut(s)	135, 254
HpaII	CCGG	2 cut(s)	209, 246
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	150
Hpy8I	GTNNAC	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	2 cut(s)	85, 130
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	4 cut(s)	130, 222, 259, 323
Lsp1109I	GCAGC	2 cut(s)	203, 320
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	10, 200
MalI	GATC	2 cut(s)	87, 132
MboI	GATC	2 cut(s)	85, 130
MboII	GAAGA	3 cut(s)	59, 213, 284
MluCI	AATT	2 cut(s)	122, 317
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	1 cut(s)	84
MseI	TTAA	3 cut(s)	68, 93, 155
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	67
MspI	CCGG	2 cut(s)	209, 246
MspR9I	CCNGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	85, 130
NlaIII	CATG	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	254
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	165, 218, 310
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PsiI	TTATAA	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	68, 93, 155
SatI	GCNGC	3 cut(s)	164, 217, 309
Sau3AI	GATC	2 cut(s)	85, 130
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	6 cut(s)	43, 155, 237, 291, 313, 342
SfcI	CTRYAG	1 cut(s)	312
SgrAI	CRCCGGYG	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	2 cut(s)	122, 317
SsiI	CCGC	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	2 cut(s)	84, 133
TasI	AATT	2 cut(s)	122, 317
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	3 cut(s)	68, 93, 155
Tru9I	TTAA	3 cut(s)	68, 93, 155
TscAI	CASTG	1 cut(s)	149
TseI	GCWGC	2 cut(s)	216, 308
TspDTI	ATGAA	2 cut(s)	11, 66
TspRI	CASTG	1 cut(s)	149
Vha464I	CTTAAG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.