Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

37247032 .. 37247931

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAACACTCAGAGGCTGTGAATAAGGAAGGAATCATATATTACAACAACCTCATAAACGAGCTTCTAGCCACTGGTCTAAAGCCCTTTGTCACACTCTTCCATTGGGATCTTCCCCAAGCTTTAGAAGATGAATACGGTGGCTTCTTAAGCCCTCAAATTGTAAACCATTTCCAAGACTACGCAGAGCTATGCTTCAAGGAATTTGGTGATAGAGTTAAGGACTGGATCACATTAAACAAGCCCTGGAGCTATGCTAATGGAATAGAGCCATATTTGGTCTCACACTACCAGCTTCTAGCTCACGCAGGAGCCGTAAAGATATACAAGGAGAAGTATCAGGCTAATCAGAAGGGTGTGATAGCGATAATAATACTGTCGCACTGGTTTCTGCCCTTTTCTGATGCCAAGCACCATGAAGAAGCTACTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0004565 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0015925 GO:0015926 GO:0016143 GO:0016145 GO:0016787 GO:0016798 GO:0019137 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0033907 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0047701 GO:0050896 GO:0071704 GO:0080083 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00380 ko00460 ko00500 ko00940 ko01100 ko01110 map00380 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

144

Amino Acids

16.67

Weight (kDa)

5.53

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	5 - 140	2e-39	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	117, 236
AcsI	RAATTY	1 cut(s)	203
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	245
AluBI	AGCT	7 cut(s)	64, 122, 190, 252, 295, 302, 425
AluI	AGCT	7 cut(s)	64, 122, 190, 252, 295, 302, 425
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	2 cut(s)	117, 236
AlwNI	CAGNNNCTG	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	2 cut(s)	68, 299
BfrI	CTTAAG	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	247
BmsI	GCATC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	268
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	245
Bse1I	ACTGG	3 cut(s)	79, 230, 389
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	3 cut(s)	79, 230, 389
BsmAI	GTCTC	1 cut(s)	286
Bso31I	GGTCTC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	109, 228
BspCNI	CTCAG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	117, 236
BspTI	CTTAAG	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	286
BsrI	ACTGG	3 cut(s)	79, 230, 389
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	109, 228
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	2 cut(s)	140, 378
Bst6I	CTCTTC	1 cut(s)	104
BstAFI	CTTAAG	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	112, 231
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	2 cut(s)	109, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	72, 382
CaiI	CAGNNNCTG	1 cut(s)	17
CviAII	CATG	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	2 cut(s)	111, 230
DpnII	GATC	2 cut(s)	109, 228
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	245
FaeI	CATG	1 cut(s)	419
FaiI	YATR	9 cut(s)	38, 40, 56, 193, 255, 274, 325, 417, 433
FatI	CATG	1 cut(s)	415
FspBI	CTAG	2 cut(s)	68, 299
GsuI	CTGGAG	1 cut(s)	268
Hin1II	CATG	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	1 cut(s)	33
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	13, 351, 403
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	23, 346
HpyCH4III	ACNGT	2 cut(s)	140, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	109, 228
LmnI	GCTCC	2 cut(s)	249, 311
LpnPI	CCDG	8 cut(s)	60, 211, 232, 259, 294, 305, 326, 370
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	68, 299
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	111, 230
MboI	GATC	2 cut(s)	109, 228
MboII	GAAGA	4 cut(s)	91, 104, 140, 431
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	2 cut(s)	159, 203
MnlI	CCTC	3 cut(s)	7, 62, 165
MseI	TTAA	3 cut(s)	149, 219, 236
MspCI	CTTAAG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	150
NdeII	GATC	2 cut(s)	109, 228
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	109
SaqAI	TTAA	3 cut(s)	149, 219, 236
Sau3AI	GATC	2 cut(s)	109, 228
ScrFI	CCNGG	1 cut(s)	247
SetI	ASST	8 cut(s)	54, 66, 124, 192, 254, 297, 304, 427
SfaNI	GCATC	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	2 cut(s)	159, 203
SspMI	CTAG	2 cut(s)	68, 299
StyD4I	CCNGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	140, 378
TasI	AATT	2 cut(s)	159, 203
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	3 cut(s)	149, 219, 236
Tru9I	TTAA	3 cut(s)	149, 219, 236
TscAI	CASTG	2 cut(s)	79, 389
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	147, 432
TspRI	CASTG	2 cut(s)	79, 389
Vha464I	CTTAAG	1 cut(s)	148
XapI	RAATTY	1 cut(s)	203
XspI	CTAG	2 cut(s)	68, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.