Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Forward (+)

82579961 .. 82580272

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG603900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTATCGATGGTACTGGGAAAGTGAAGAACCGGATGACATTCAATGAGCCTAGAGTGGTGGTTGCTCTTGGCTATGACAATGGGATGAATACTCCGGCACGGTGCTCCAAAGCTTATGGAAATTGCACAGCTGGGATTTCACAAACTGAGCCTCACATTGCTGCTTATCATTCGATTTTGTCACATGCAGCTGCTGTTCAGAGATACCGTGAAAAGTATCAGAAAACACAAAAAGAGTGGTCTTGCTCATCCATAAATATTGGCTTAATTTCCTTGGTTTTTTTTTTTCCCTCTCATCTCAGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

9.33

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	8 - 78	2.3e-07	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	310
AfaI	GTAC	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	46
AluBI	AGCT	3 cut(s)	116, 134, 194
AluI	AGCT	3 cut(s)	116, 134, 194
Alw21I	GWGCWC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	197
ApeKI	GCWGC	3 cut(s)	164, 191, 194
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	151, 181, 203
BccI	CCATC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	3 cut(s)	165, 192, 195
BlsI	GCNGC	3 cut(s)	166, 193, 196
BmrI	ACTGGG	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	3 cut(s)	42, 93, 251
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	151, 181, 203
BseYI	CCCAGC	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	34, 98
Bsp1286I	GDGCHC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	105, 212
BstDEI	CTNAG	2 cut(s)	150, 302
BstF5I	GGATG	3 cut(s)	42, 93, 251
BstNSI	RCATGY	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	151, 181, 203
Bsu15I	ATCGAT	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	42, 93, 251
CaiI	CAGNNNCTG	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	15
CspCI	CAANNNNNGTGG	2 cut(s)	221, 256
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	7 cut(s)	52, 75, 116, 134, 154, 194, 267
CviKI_1	RGCY	7 cut(s)	52, 75, 116, 134, 154, 194, 267
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	2 cut(s)	150, 302
Eco130I	CCWWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	1 cut(s)	191
FaiI	YATR	5 cut(s)	78, 120, 189, 257, 310
FatI	CATG	1 cut(s)	187
Fnu4HI	GCNGC	3 cut(s)	165, 192, 195
FokI	GGATG	3 cut(s)	49, 100, 238
Fsp4HI	GCNGC	3 cut(s)	165, 192, 195
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	3 cut(s)	165, 192, 195
GsaI	CCCAGC	1 cut(s)	138
HapII	CCGG	2 cut(s)	34, 98
Hin1II	CATG	1 cut(s)	191
HindIII	AAGCTT	1 cut(s)	114
HpaII	CCGG	2 cut(s)	34, 98
Hpy188I	TCNGA	2 cut(s)	204, 225
HpyCH4III	ACNGT	2 cut(s)	105, 212
HpyCH4V	TGCA	2 cut(s)	129, 191
HpyF3I	CTNAG	2 cut(s)	150, 302
Hsp92II	CATG	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	4 cut(s)	3, 47, 111, 120
Lsp1109I	GCAGC	3 cut(s)	151, 181, 203
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	183
MboII	GAAGA	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	2 cut(s)	124, 270
MnlI	CCTC	2 cut(s)	165, 304
MseI	TTAA	1 cut(s)	269
MspA1I	CMGCKG	2 cut(s)	134, 194
MspI	CCGG	2 cut(s)	34, 98
NlaIII	CATG	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	183
NspI	RCATGY	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	166, 193, 196
PsiI	TTATAA	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	197
PvuII	CAGCTG	2 cut(s)	134, 194
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	3 cut(s)	165, 192, 195
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	3 cut(s)	118, 136, 196
Sse9I	AATT	2 cut(s)	124, 270
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	105, 212
TaqI	TCGA	2 cut(s)	9, 176
TasI	AATT	2 cut(s)	124, 270
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	3 cut(s)	164, 191, 194
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	104
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.