Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006862.1

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

11065 .. 16368

Gene Structure 5304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006862.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgagcctggagtggtggttgctctgccatgacaatgggatgaatcctccggcacggtgcaccaaagcttatggaaattgcacagctgggatttcacaaactgagccttacattgctgctcatcatttgattttgtcacatgcagctgctgttcagagataccgtgaaaagtatcagaaaacacaaaaagagtggacaaagaaagagaggccaaacgcagcctatgtcctcgcatctccggtgtcagagcgtcgtgctggagaagatgactcgcctcatgatgaaggcactctggatgatgatgaagactacttgaaagagcatgatgatgatatgttcaaaaaaaagaatgatgatgatgaaaagtgcttggaaaatgatgatgatgtcttcgatgatgaagacagtttggacgacgatgagattccttggcttaattatgatggtgaagatggagacttctgcttggacgatgacgatgatgatgaagactgcttggacaatgatgagattccttggcttcattatgatggtgaagatgaagactgttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

184

Amino Acids

21.31

Weight (kDa)

4.05

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	316, 340
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	3 cut(s)	68, 86, 146
AluI	AGCT	3 cut(s)	68, 86, 146
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	450
Alw44I	GTGCAC	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	209
ApaLI	GTGCAC	1 cut(s)	58
ApeKI	GCWGC	4 cut(s)	116, 143, 146, 218
AsuHPI	GGTGA	2 cut(s)	458, 545
BaeGI	GKGCMC	1 cut(s)	62
BbsI	GAAGAC	5 cut(s)	312, 382, 408, 495, 549
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	4 cut(s)	103, 133, 155, 230
BccI	CCATC	3 cut(s)	437, 446, 524
BciT130I	CCWGG	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	450
BisI	GCNGC	4 cut(s)	117, 144, 147, 219
BlsI	GCNGC	4 cut(s)	118, 145, 148, 220
Bme1390I	CCNGG	1 cut(s)	8
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	242
BpiI	GAAGAC	5 cut(s)	312, 382, 408, 495, 549
BpmI	CTGGAG	2 cut(s)	29, 279
BsaJI	CCNNGG	2 cut(s)	428, 515
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	2 cut(s)	428, 515
BseGI	GGATG	2 cut(s)	45, 301
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	4 cut(s)	103, 133, 155, 230
BseYI	CCCAGC	1 cut(s)	86
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	50, 239
BsmAI	GTCTC	1 cut(s)	450
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	428, 515
BssT1I	CCWWGG	2 cut(s)	428, 515
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	4 cut(s)	57, 164, 407, 548
BstDEI	CTNAG	2 cut(s)	102, 552
BstF5I	GGATG	2 cut(s)	45, 301
BstMAI	GTCTC	1 cut(s)	450
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	4 cut(s)	103, 133, 155, 230
BstV2I	GAAGAC	5 cut(s)	312, 382, 408, 495, 549
BstXI	CCANNNNNNTGG	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	45, 301
CaiI	CAGNNNCTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	277
CseI	GACGC	1 cut(s)	239
CspCI	CAANNNNNGTGG	2 cut(s)	173, 208
CviAII	CATG	4 cut(s)	29, 140, 278, 323
CviJI	RGCY	9 cut(s)	6, 68, 86, 106, 146, 211, 221, 433, 520
CviKI_1	RGCY	9 cut(s)	6, 68, 86, 106, 146, 211, 221, 433, 520
DdeI	CTNAG	2 cut(s)	102, 552
Eco130I	CCWWGG	2 cut(s)	428, 515
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	428, 515
ErhI	CCWWGG	2 cut(s)	428, 515
FaeI	CATG	4 cut(s)	32, 143, 281, 326
FaiI	YATR	9 cut(s)	30, 72, 141, 225, 279, 324, 335, 441, 528
FatI	CATG	4 cut(s)	28, 139, 277, 322
Fnu4HI	GCNGC	4 cut(s)	117, 144, 147, 219
FokI	GGATG	2 cut(s)	52, 308
Fsp4HI	GCNGC	4 cut(s)	117, 144, 147, 219
GluI	GCNGC	4 cut(s)	117, 144, 147, 219
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	2 cut(s)	29, 279
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	2 cut(s)	50, 239
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	32, 143, 281, 326
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	4 cut(s)	43, 269, 424, 511
HpaII	CCGG	2 cut(s)	50, 239
HphI	GGTGA	2 cut(s)	458, 545
Hpy166II	GTNNAC	2 cut(s)	60, 195
Hpy188I	TCNGA	3 cut(s)	156, 177, 247
Hpy188III	TCNNGA	2 cut(s)	278, 293
Hpy8I	GTNNAC	2 cut(s)	60, 195
Hpy99I	CGWCG	2 cut(s)	255, 419
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	4 cut(s)	57, 164, 407, 548
HpyCH4V	TGCA	3 cut(s)	60, 81, 143
HpyF3I	CTNAG	2 cut(s)	102, 552
Hsp92II	CATG	4 cut(s)	32, 143, 281, 326
LpnPI	CCDG	6 cut(s)	20, 63, 72, 243, 252, 278
Lsp1109I	GCAGC	4 cut(s)	103, 133, 155, 230
LweI	GCATC	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	135
MboII	GAAGA	8 cut(s)	275, 317, 382, 413, 461, 500, 548, 554
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	2 cut(s)	76, 436
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	4 cut(s)	57, 201, 239, 285
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	3 cut(s)	33, 327, 528
MspA1I	CMGCKG	2 cut(s)	86, 146
MspI	CCGG	2 cut(s)	50, 239
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
NlaIII	CATG	4 cut(s)	32, 143, 281, 326
NmuCI	GTSAC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	143
PagI	TCATGA	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	43, 424, 511
PkrI	GCNGC	4 cut(s)	118, 145, 148, 220
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	6
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	149
PvuII	CAGCTG	2 cut(s)	86, 146
RseI	CAYNNNNRTG	3 cut(s)	33, 327, 528
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	4 cut(s)	117, 144, 147, 219
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	3 cut(s)	70, 88, 148
SfaNI	GCATC	1 cut(s)	242
SmiMI	CAYNNNNRTG	3 cut(s)	33, 327, 528
Sse9I	AATT	2 cut(s)	76, 436
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	2 cut(s)	428, 515
TaaI	ACNGT	4 cut(s)	57, 164, 407, 548
TaqI	TCGA	1 cut(s)	393
TasI	AATT	2 cut(s)	76, 436
TfiI	GAWTC	3 cut(s)	43, 424, 511
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	4 cut(s)	116, 143, 146, 218
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	8 cut(s)	56, 297, 318, 375, 414, 501, 512, 555
VneI	GTGCAC	1 cut(s)	58
XceI	RCATGY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.