Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Forward (+)

83870750 .. 83872307

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036733

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCTTATGTTTTCCCAGGTCTAAAGCCATTTGTAACCCTCTTCCACTGGGATCTTCCCCAGACTTTAGAAGATGAATGTGGCGGTTTCTTAAGCCTTGCTAGGCACACCATCACCAAGTACACTAGGCATAGTAGGCACCACCTTACTGCCATCAGTATTAGTCTCACAGGCACCATGCACATCACCATTACTACATGCAAGAGCACTACTCATTATGCTAACAGGGTAAAGCACTGGATCACGTTGACTGAGCCATGGACATTCAGTAATCGTGGTTATGCCGGCGGATCGTTGGCACCAGGACGGTGTTCTGCTTGGCAGAAGCTAAACCGCACCGGCGGGGACTCGAGTACTGAACCATATTTGGTGGCACACCACCTACTCCTTTCTCATGCAGCTGCGGTAAAGTTGTACAAGCAGAAATATCATGTCAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

148

Amino Acids

16.59

Weight (kDa)

9.71

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	7 - 47	2e-08	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	71 - 143	8.9e-12	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	138, 173, 298
AciI	CCGC	5 cut(s)	84, 288, 334, 342, 404
AclWI	GGATC	3 cut(s)	60, 248, 298
AfaI	GTAC	3 cut(s)	122, 355, 416
AflII	CTTAAG	1 cut(s)	91
AjnI	CCWGG	2 cut(s)	16, 301
AluBI	AGCT	3 cut(s)	328, 401, 441
AluI	AGCT	3 cut(s)	328, 401, 441
Alw21I	GWGCWC	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	60, 248, 298
Ama87I	CYCGRG	1 cut(s)	349
ApeKI	GCWGC	2 cut(s)	398, 401
AsuHPI	GGTGA	2 cut(s)	106, 178
AvaI	CYCGRG	1 cut(s)	349
BanI	GGYRCC	3 cut(s)	138, 173, 298
Bbv12I	GWGCWC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	388, 410
BccI	CCATC	2 cut(s)	119, 161
BciT130I	CCWGG	2 cut(s)	18, 303
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	3 cut(s)	102, 126, 442
BfrI	CTTAAG	1 cut(s)	91
BisI	GCNGC	2 cut(s)	399, 402
BlsI	GCNGC	2 cut(s)	400, 403
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	18, 303
BmeT110I	CYCGRG	1 cut(s)	349
BmiI	GGNNCC	3 cut(s)	140, 175, 300
BmrFI	CCNGG	2 cut(s)	18, 303
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BsaJI	CCNNGG	2 cut(s)	16, 257
Bse118I	RCCGGY	2 cut(s)	284, 338
Bse1I	ACTGG	2 cut(s)	53, 242
BseBI	CCWGG	2 cut(s)	18, 303
BseDI	CCNNGG	2 cut(s)	16, 257
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	2 cut(s)	53, 242
BseXI	GCAGC	2 cut(s)	388, 410
BshNI	GGYRCC	3 cut(s)	138, 173, 298
BsiHKAI	GWGCWC	1 cut(s)	209
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	285, 339
BslFI	GGGAC	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	52, 240, 290
Bsp19I	CCATGG	1 cut(s)	257
BspACI	CCGC	5 cut(s)	84, 288, 334, 342, 404
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	140, 175, 300
BspPI	GGATC	3 cut(s)	60, 248, 298
BspT107I	GGYRCC	3 cut(s)	138, 173, 298
BspTI	CTTAAG	1 cut(s)	91
BsrFI	RCCGGY	2 cut(s)	284, 338
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	53, 242
BssAI	RCCGGY	2 cut(s)	284, 338
BssECI	CCNNGG	2 cut(s)	16, 257
BssMI	GATC	3 cut(s)	52, 240, 290
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	2 cut(s)	18, 303
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	1 cut(s)	47
BstAFI	CTTAAG	1 cut(s)	91
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	257
BstKTI	GATC	3 cut(s)	55, 243, 293
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	3 cut(s)	52, 240, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	2 cut(s)	18, 303
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	16, 301
BstV1I	GCAGC	2 cut(s)	388, 410
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	257
BtsIMutI	CAGTG	2 cut(s)	46, 235
Cac8I	GCNNGC	1 cut(s)	286
Cfr10I	RCCGGY	2 cut(s)	284, 338
Csp6I	GTAC	3 cut(s)	121, 354, 415
CviAII	CATG	5 cut(s)	178, 198, 258, 395, 431
CviJI	RGCY	6 cut(s)	28, 96, 256, 328, 401, 441
CviKI_1	RGCY	6 cut(s)	28, 96, 256, 328, 401, 441
CviQI	GTAC	3 cut(s)	121, 354, 415
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	54, 242, 292
DpnII	GATC	3 cut(s)	52, 240, 290
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	349
EcoRII	CCWGG	2 cut(s)	16, 301
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	5 cut(s)	181, 201, 261, 398, 434
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	5 cut(s)	177, 197, 257, 394, 430
FauI	CCCGC	1 cut(s)	335
Fnu4HI	GCNGC	2 cut(s)	399, 402
Fsp4HI	GCNGC	2 cut(s)	399, 402
FspBI	CTAG	3 cut(s)	102, 126, 442
GluI	GCNGC	2 cut(s)	399, 402
HapII	CCGG	2 cut(s)	285, 339
Hin1II	CATG	5 cut(s)	181, 201, 261, 398, 434
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	2 cut(s)	285, 339
HphI	GGTGA	2 cut(s)	106, 178
Hpy166II	GTNNAC	2 cut(s)	123, 249
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	2 cut(s)	123, 249
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	3 cut(s)	181, 201, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	5 cut(s)	181, 201, 261, 398, 434
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	52, 240, 290
Lsp1109I	GCAGC	2 cut(s)	388, 410
MaeI	CTAG	3 cut(s)	102, 126, 442
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	54, 242, 292
MboI	GATC	3 cut(s)	52, 240, 290
MboII	GAAGA	3 cut(s)	34, 47, 83
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	91
MspI	CCGG	2 cut(s)	285, 339
MspR9I	CCNGG	2 cut(s)	18, 303
MvaI	CCWGG	2 cut(s)	18, 303
MwoI	GCNNNNNNNGC	1 cut(s)	136
NaeI	GCCGGC	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	257
NdeII	GATC	3 cut(s)	52, 240, 290
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	5 cut(s)	181, 201, 261, 398, 434
NlaIV	GGNNCC	3 cut(s)	140, 175, 300
NspI	RCATGY	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	400, 403
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	16, 301
PspGI	CCWGG	2 cut(s)	16, 301
PspN4I	GGNNCC	3 cut(s)	140, 175, 300
PspXI	VCTCGAGB	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	3 cut(s)	122, 355, 416
RsaNI	GTAC	3 cut(s)	121, 354, 415
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	2 cut(s)	399, 402
Sau3AI	GATC	3 cut(s)	52, 240, 290
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	18, 303
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	7 cut(s)	22, 147, 248, 330, 384, 403, 443
Sfr274I	CTCGAG	1 cut(s)	349
SgrAI	CRCCGGYG	1 cut(s)	338
SlaI	CTCGAG	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	91, 349
SmoI	CTYRAG	2 cut(s)	91, 349
SsiI	CCGC	5 cut(s)	84, 288, 334, 342, 404
SspMI	CTAG	3 cut(s)	102, 126, 442
StyD4I	CCNGG	2 cut(s)	16, 301
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	309
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	350
TatI	WGTACW	3 cut(s)	120, 353, 414
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	2 cut(s)	53, 242
TseI	GCWGC	2 cut(s)	398, 401
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	2 cut(s)	53, 242
Vha464I	CTTAAG	1 cut(s)	91
XceI	RCATGY	1 cut(s)	201
XhoI	CTCGAG	1 cut(s)	349
XspI	CTAG	3 cut(s)	102, 126, 442
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.