Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7982122.1

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 469

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7982122.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 383 bp

tatgcagcaagcattttcgggactatgcggagctgtgttacaaggaatttggtgatcgggtaaagcactggatgacgttgaatcagccatgggcatacagtaatggtggttatgcaaccgggtcaaaggcaccaggacggtgttctgcgtggcagcagctaaattgcttcggcggggattcgggtactgaaccatatttggtgggacaccacctactcctttctcatgcagctgctgtaaagttgtacaagcagaaatatcaggcatctcaaaaaggacttataggggtgacccatgtgtctcactggttcattccaatttcaggggcaaagcacaacaaaaatgctgccttacgatctttggattttatgcttggatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

9.37

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	129
AciI	CCGC	2 cut(s)	28, 173
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	2 cut(s)	186, 247
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	33, 159, 232
AluI	AGCT	3 cut(s)	33, 159, 232
Alw26I	GTCTC	1 cut(s)	305
AlwNI	CAGNNNCTG	1 cut(s)	235
ApeKI	GCWGC	6 cut(s)	5, 153, 156, 229, 232, 346
ApoI	RAATTY	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	64, 300
BanI	GGYRCC	1 cut(s)	129
BbvI	GCAGC	6 cut(s)	17, 165, 168, 219, 241, 333
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	305
BisI	GCNGC	6 cut(s)	6, 154, 157, 230, 233, 347
BlsI	GCNGC	6 cut(s)	7, 155, 158, 231, 234, 348
Bme1390I	CCNGG	2 cut(s)	120, 134
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	2 cut(s)	120, 134
BmsI	GCATC	1 cut(s)	274
BpuMI	CCSGG	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	2 cut(s)	73, 310
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	77, 382
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseNI	ACTGG	2 cut(s)	73, 310
BseXI	GCAGC	6 cut(s)	17, 165, 168, 219, 241, 333
BshNI	GGYRCC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	34, 218
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	34, 218
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	54, 355
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	2 cut(s)	28, 173
BspLI	GGNNCC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	129
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	73, 310
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	54, 355
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	100, 140
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	10
BstDSI	CCRYGG	1 cut(s)	88
BstEII	GGTNACC	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	77, 382
BstKTI	GATC	2 cut(s)	57, 358
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	54, 355
BstNI	CCWGG	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	118, 132
BstV1I	GCAGC	6 cut(s)	17, 165, 168, 219, 241, 333
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	77, 382
BtsIMutI	CAGTG	2 cut(s)	66, 303
Cac8I	GCNNGC	1 cut(s)	10
CaiI	CAGNNNCTG	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	185, 246
CviAII	CATG	3 cut(s)	89, 226, 295
CviJI	RGCY	4 cut(s)	33, 87, 159, 232
CviKI_1	RGCY	4 cut(s)	33, 87, 159, 232
CviQI	GTAC	2 cut(s)	185, 246
DpnI	GATC	2 cut(s)	56, 357
DpnII	GATC	2 cut(s)	54, 355
DrdI	GACNNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	288
EcoO65I	GGTNACC	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	92, 229, 298
FaqI	GGGAC	2 cut(s)	34, 218
FatI	CATG	3 cut(s)	88, 225, 294
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	6 cut(s)	6, 154, 157, 230, 233, 347
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	6 cut(s)	6, 154, 157, 230, 233, 347
GluI	GCNGC	6 cut(s)	6, 154, 157, 230, 233, 347
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	3 cut(s)	92, 229, 298
HinfI	GANTC	2 cut(s)	81, 178
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	2 cut(s)	64, 300
Hpy188III	TCNNGA	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	100, 140
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	5, 115, 229
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	3 cut(s)	92, 229, 298
Kzo9I	GATC	2 cut(s)	54, 355
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	7 cut(s)	54, 119, 132, 146, 247, 291, 308
Lsp1109I	GCAGC	6 cut(s)	17, 165, 168, 219, 241, 333
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	2 cut(s)	37, 288
MalI	GATC	2 cut(s)	56, 357
MboI	GATC	2 cut(s)	54, 355
MluCI	AATT	3 cut(s)	46, 162, 317
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	120, 134
MvaI	CCWGG	1 cut(s)	134
NciI	CCSGG	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	2 cut(s)	54, 355
NlaIII	CATG	3 cut(s)	92, 229, 298
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	81, 178
PkrI	GCNGC	6 cut(s)	7, 155, 158, 231, 234, 348
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	131
PstNI	CAGNNNCTG	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	2 cut(s)	186, 247
RsaNI	GTAC	2 cut(s)	185, 246
SatI	GCNGC	6 cut(s)	6, 154, 157, 230, 233, 347
Sau3AI	GATC	2 cut(s)	54, 355
ScrFI	CCNGG	2 cut(s)	120, 134
SetI	ASST	5 cut(s)	35, 79, 161, 215, 234
SfaNI	GCATC	1 cut(s)	274
Sse9I	AATT	3 cut(s)	46, 162, 317
SsiI	CCGC	2 cut(s)	28, 173
StyD4I	CCNGG	2 cut(s)	118, 132
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	100, 140
TaiI	ACGT	1 cut(s)	79
TasI	AATT	3 cut(s)	46, 162, 317
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	81, 178
TscAI	CASTG	2 cut(s)	73, 310
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	6 cut(s)	5, 153, 156, 229, 232, 346
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	73, 310
XapI	RAATTY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.