Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

62595865 .. 62597486

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035190

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCTATCGATGGTACTGGGAAAGTGAAGAATTGGATAACATTCAATGAGCCTAGAGTGGTGGTTGCTCTTGGCTATGACAATGGGATGAATCCTCCGGCATGGTGCTCCAAAGCTTATGGAAATTGCACAGCTGGGATTTCACAAACTGAGCCTTACATTGCTGCTCAGCATTTGATTTTGTCACATGCAGCTGCTGTTCAGAGATACCGTGAAAAGTTTTCAGGACAGAAAGAAATGGAATCAAACCCTGAGAAATTGAAATCACAAACCAAACTCTTACCGAACTTGAGGTGGCCACCAGGTAGAGCAAAGGTGGAGGCGTCGATGGTGCATGAGATGTCCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

117

Amino Acids

12.88

Weight (kDa)

9.2

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	8 - 74	1.9e-09	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	46, 262
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	116, 134, 194
AluI	AGCT	3 cut(s)	116, 134, 194
Alw21I	GWGCWC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	3 cut(s)	164, 191, 194
BalI	TGGCCA	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	151, 181, 203
BccI	CCATC	2 cut(s)	5, 322
BciT130I	CCWGG	1 cut(s)	303
BfaI	CTAG	2 cut(s)	54, 349
BisI	GCNGC	3 cut(s)	165, 192, 195
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	3 cut(s)	166, 193, 196
Bme1390I	CCNGG	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	27
BplI	GAGNNNNNCTC	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	310
Bsa29I	ATCGAT	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	9
BseGI	GGATG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	141, 182, 243
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	151, 181, 203
BseYI	CCCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	98
BsnI	GGCC	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp1720I	GCTNAGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	3 cut(s)	142, 181, 244
BspDI	ATCGAT	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	22
BssNI	GRCGYC	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	323
BstDEI	CTNAG	3 cut(s)	150, 168, 252
BstF5I	GGATG	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	151, 181, 203
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	1 cut(s)	312
CsiI	ACCWGGT	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	3 cut(s)	102, 188, 335
CviJI	RGCY	7 cut(s)	52, 75, 116, 134, 154, 194, 298
CviKI_1	RGCY	7 cut(s)	52, 75, 116, 134, 154, 194, 298
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	3 cut(s)	150, 168, 252
EaeI	YGGCCR	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	301
FaeI	CATG	3 cut(s)	105, 191, 338
FaiI	YATR	5 cut(s)	78, 103, 120, 189, 336
FatI	CATG	3 cut(s)	101, 187, 334
Fnu4HI	GCNGC	3 cut(s)	165, 192, 195
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	3 cut(s)	165, 192, 195
FspBI	CTAG	2 cut(s)	54, 349
GluI	GCNGC	3 cut(s)	165, 192, 195
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	105, 191, 338
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	2 cut(s)	91, 242
HpaII	CCGG	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	129, 191, 334
HpyF3I	CTNAG	3 cut(s)	150, 168, 252
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	105, 191, 338
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	7 cut(s)	3, 111, 120, 210, 264, 288, 315
Lsp1109I	GCAGC	3 cut(s)	151, 181, 203
MabI	ACCWGGT	1 cut(s)	301
MaeI	CTAG	2 cut(s)	54, 349
MaeIII	GTNAC	1 cut(s)	183
MboII	GAAGA	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	110
MlsI	TGGCCA	1 cut(s)	298
MluCI	AATT	3 cut(s)	31, 124, 257
MluNI	TGGCCA	1 cut(s)	298
MnlI	CCTC	3 cut(s)	105, 285, 313
Mox20I	TGGCCA	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	298
Msp20I	TGGCCA	1 cut(s)	298
MspA1I	CMGCKG	2 cut(s)	134, 194
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
NlaIII	CATG	3 cut(s)	105, 191, 338
NmuCI	GTSAC	1 cut(s)	183
NspI	RCATGY	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	91, 242
PkrI	GCNGC	3 cut(s)	166, 193, 196
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	197
PvuII	CAGCTG	2 cut(s)	134, 194
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SatI	GCNGC	3 cut(s)	165, 192, 195
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	6 cut(s)	118, 136, 196, 296, 307, 318
SexAI	ACCWGGT	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	3 cut(s)	31, 124, 257
SspMI	CTAG	2 cut(s)	54, 349
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	9, 326
TasI	AATT	3 cut(s)	31, 124, 257
TfiI	GAWTC	2 cut(s)	91, 242
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	3 cut(s)	164, 191, 194
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	104
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	2 cut(s)	54, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.