Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006568.1

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Forward (+)

60070 .. 61600

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006568.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgagccctagagtggtggttgctcttggctatgacaatgggatgaatcctccggcacggtgctccaaagcttatggaaattgcacaactgggatttcacaaactgagccttacattgttgctcatcatttgattttgtcacatgcagctgctgttcagagataccgtgaaaagtatcagaaaacacaaaaagagtggtcttgctcatccataaatattggcttaatttccttgcctggagcaggacaccatggtggccaccagggagagcaaaggtggaggcgccgatggtgcatgagatgtcgtcctagcaccgagagagagaaagagagagagacagttgagggagaagaactggtcgatgaagaggaagaggaagaggaagagaagaggctggtcgtgtgtgtaattccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

138

Amino Acids

15.78

Weight (kDa)

6.31

Isoelectric Point (pI)

69.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	256
AcyI	GRCGYC	1 cut(s)	283
AfiI	CCNNNNNNNGG	2 cut(s)	13, 242
AjnI	CCWGG	2 cut(s)	235, 261
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	2 cut(s)	71, 149
AluI	AGCT	2 cut(s)	71, 149
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	146, 149
AspLEI	GCGC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	136, 158
BccI	CCATC	1 cut(s)	282
BciT130I	CCWGG	2 cut(s)	237, 263
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	9, 309
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	2 cut(s)	147, 150
BlsI	GCNGC	2 cut(s)	148, 151
Bme1390I	CCNGG	2 cut(s)	237, 263
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	237, 263
BmrI	ACTGGG	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	250, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 242
Bse1I	ACTGG	2 cut(s)	94, 360
BseBI	CCWGG	2 cut(s)	237, 263
BseDI	CCNNGG	2 cut(s)	250, 262
BseGI	GGATG	2 cut(s)	48, 206
BseLI	CCNNNNNNNGG	2 cut(s)	13, 242
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	94, 360
BseXI	GCAGC	2 cut(s)	136, 158
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	13, 242
BsmAI	GTCTC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	8, 65
Bsp19I	CCATGG	1 cut(s)	250
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	94, 360
BssECI	CCNNGG	2 cut(s)	250, 262
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	237, 263
Bst4CI	ACNGT	3 cut(s)	60, 167, 340
Bst6I	CTCTTC	5 cut(s)	360, 366, 372, 378, 383
BstACI	GRCGYC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	48, 206
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	2 cut(s)	237, 263
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	235, 261
BstV1I	GCAGC	2 cut(s)	136, 158
BsuRI	GGCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	48, 206
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	1 cut(s)	285
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	3 cut(s)	143, 251, 295
CviJI	RGCY	8 cut(s)	6, 30, 71, 109, 149, 222, 258, 394
CviKI_1	RGCY	8 cut(s)	6, 30, 71, 109, 149, 222, 258, 394
DdeI	CTNAG	1 cut(s)	105
DinI	GGCGCC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	5 cut(s)	360, 366, 372, 378, 383
EarI	CTCTTC	5 cut(s)	360, 366, 372, 378, 383
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	8
EcoNI	CCTNNNNNAGG	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	235, 261
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	3 cut(s)	146, 254, 298
FaiI	YATR	6 cut(s)	33, 75, 144, 212, 252, 296
FatI	CATG	3 cut(s)	142, 250, 294
Fnu4HI	GCNGC	2 cut(s)	147, 150
FokI	GGATG	2 cut(s)	55, 193
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	147, 150
FspBI	CTAG	2 cut(s)	9, 309
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	2 cut(s)	147, 150
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	3 cut(s)	146, 254, 298
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	159, 180
HpyCH4III	ACNGT	3 cut(s)	60, 167, 340
HpyCH4V	TGCA	3 cut(s)	84, 146, 294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	3 cut(s)	146, 254, 298
HspAI	GCGC	1 cut(s)	283
KasI	GGCGCC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	68, 239
LpnPI	CCDG	9 cut(s)	66, 75, 222, 228, 248, 249, 275, 341, 380
Lsp1109I	GCAGC	2 cut(s)	136, 158
MaeI	CTAG	2 cut(s)	9, 309
MaeIII	GTNAC	1 cut(s)	138
MboII	GAAGA	6 cut(s)	362, 377, 383, 389, 395, 400
MhlI	GDGCHC	2 cut(s)	8, 65
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	3 cut(s)	79, 225, 408
MluNI	TGGCCA	1 cut(s)	258
Mly113I	GGCGCC	1 cut(s)	283
MnlI	CCTC	7 cut(s)	60, 273, 337, 361, 367, 373, 384
Mox20I	TGGCCA	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	237, 263
MvaI	CCWGG	2 cut(s)	237, 263
MwoI	GCNNNNNNNGC	1 cut(s)	291
NarI	GGCGCC	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	250
NlaIII	CATG	3 cut(s)	146, 254, 298
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	138
NspI	RCATGY	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	148, 151
PluTI	GGCGCC	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	235, 261
PspGI	CCWGG	2 cut(s)	235, 261
PspN4I	GGNNCC	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	2 cut(s)	147, 150
ScrFI	CCNGG	2 cut(s)	237, 263
SduI	GDGCHC	2 cut(s)	8, 65
SetI	ASST	3 cut(s)	73, 151, 278
SfoI	GGCGCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	79, 225, 408
SspDI	GGCGCC	1 cut(s)	282
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	9, 309
StyD4I	CCNGG	2 cut(s)	235, 261
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	3 cut(s)	60, 167, 340
TaqI	TCGA	1 cut(s)	360
TasI	AATT	3 cut(s)	79, 225, 408
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	2 cut(s)	146, 149
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	59, 378
XagI	CCTNNNNNAGG	1 cut(s)	240
XceI	RCATGY	1 cut(s)	146
XspI	CTAG	2 cut(s)	9, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.