Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003267

Physical Location & Seq

Genomic Coordinates Reverse (-)

7882625 .. 7883807

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATTTCCGGGTATTCGAGGAAGGGGAATGTAGAGAGAGCAAGGCTGGTGTTTGAGGAGATGCCACTGAGAGATGTTTCATCATGGAATGCAATGATCGCAGCTTATGTGAACAATCGCAAACATGAGCTTGGGTTGTCGCTGTTTCGGGATATGGTGATGGGTGAAGAAGGTGTGAGACTTGGCCAAGTGACTGCAGTAGTGGTTTTATCTGGCTGTGCTCACTTGGGTTCTGTTGGGTTGTTGGTGGGGAAGTCAGTTCATGGGTTTGTGGTTAAGAACCGGTGGGAGATGAATGCAGAGCTCGGTACTGTTTTGATTGACATGTATGCGAAATGTGGGTTCATGAAGGGAGCAGAGCAGGTTTTTGAGTTGATGCAAGAGAAGAATGTGATGGCTTGGACTGCATTGATTTGTGGATCGGCGCAACATGGCTATAGCAAAGAAGCATTGTCTTTGTTTGAGATGATGCAAAATGCTGGTGTTAGGCCTAATGAACTGACTCTCACAGGAGTTCTTAGTGCTTGTGTGAACTCAGGGCTAGTTGAGGAGGGTGGGAAATATTTCAATCTGATTGAAAAGAGTGGCTTGGAGGTTAGGATTCAGCATTGTGGATGCATGGTTGATTTGTATGGTAAGGCCGGGATGTTAGGGGAAGCGTATGATTTCATCAAAAACATGAGACTTGAACCCGATATTACTGTGTGGGGAGCATTTTTATCGGCTTGTAAGGAGCATAAGCAGTTTGAGATAGCCGAAAGAGTAGTTGAGGAGGTCATGAAGATGGTGAAACCAGAGAATGATGGTGGGATTTACTCACTTATCGCCCATTTGTATGTTTTGGGTGGGAAGTGGGATGATGCTGAAAGAGTAAGGAGTTTCATGGTGAATCACAAGGTGAGGAAGGCTGTTTACAAACAGGAACAACACAATGATCAGGATTACAACCTTAGTTGCTTCCATTGTTTTAAGGATTCGTATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

329

Amino Acids

36.81

Weight (kDa)

6.38

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	24 - 75	8.6e-07	PPR repeat family
PPR_2	PF13041	129 - 178	4.8e-10	PPR repeat family
PPR	PF01535	133 - 162	7.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13211 FvH4_3g13220
malus_domestica	MD10G1225900.v1.1
prunus_persica	Prupe.4G119500_v2.0.a1 Prupe.4G119600_v2.0.a1
pyrus_communis	pycom10g18980
rosa_chinensis	RchiOBHm_Chr5g0021561 RchiOBHm_Chr5g0021571 RchiOBHm_Chr7g0219451
rosa_laevigata	RLG00000032615
rosa_multiflora	Rmu_co8317561.1_g000001 Rmu_co8317561.1_g000002 Rmu_co8347725.1_g000001 Rmu_sc0002052.1_g000015 Rmu_sc0002052.1_g000016 Rmu_sc0002052.1_g000017 Rmu_sc0003767.1_g000012 Rmu_sc0023070.1_g000006 Rmu_sc0023070.1_g000007 Rmu_sc0023070.1_g000008
rosa_roxburghii	Rroxscaffold_1G00057070 Rroxscaffold_1G00057080 Rroxscaffold_1G00057090
rosa_rugosa	Rorug05G0067400 Rorug05G0067400 Rorug07G0185200
rosa_samantha	Rh5AG156800 Rh5BG156000 Rh5BG156100 Rh5BG156200 Rh5CG170300 Rh5CG170400 Rh5DG156600 Rh7AG328000 Rh7BG318000 Rh7CG345400
rosa_wichuraiana	Rw7G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	184
AdeI	CACNNNGTG	1 cut(s)	898
AfaI	GTAC	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	324
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	568, 578, 689
AluBI	AGCT	3 cut(s)	104, 130, 304
AluI	AGCT	3 cut(s)	104, 130, 304
Alw21I	GWGCWC	2 cut(s)	223, 306
Alw26I	GTCTC	2 cut(s)	172, 676
AlwI	GGATC	1 cut(s)	427
AoxI	GGCC	3 cut(s)	184, 488, 639
ApeKI	GCWGC	1 cut(s)	101
AsiGI	ACCGGT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	427
AsuC2I	CCSGG	2 cut(s)	10, 643
AsuHPI	GGTGA	5 cut(s)	169, 176, 799, 898, 910
BalI	TGGCCA	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	306
BarI	GAAGNNNNNNTAC	2 cut(s)	896, 928
Bbv12I	GWGCWC	2 cut(s)	223, 306
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	4 cut(s)	154, 388, 778, 797
BcgI	CGANNNNNNTGC	2 cut(s)	702, 736
BclI	TGATCA	1 cut(s)	934
BcnI	CCSGG	2 cut(s)	10, 643
BcoDI	GTCTC	2 cut(s)	172, 676
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	2 cut(s)	195, 436
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	10, 643
BmrFI	CCNGG	2 cut(s)	10, 643
BmsI	GCATC	5 cut(s)	51, 366, 459, 605, 850
BpuMI	CCSGG	2 cut(s)	10, 643
BsaWI	WCCGGW	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	99
BseGI	GGATG	3 cut(s)	620, 651, 862
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	59, 549
BseRI	GAGGAG	3 cut(s)	71, 563, 785
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	3 cut(s)	186, 490, 641
BshTI	ACCGGT	1 cut(s)	282
BsiHKAI	GWGCWC	2 cut(s)	223, 306
BsiSI	CCGG	3 cut(s)	9, 283, 642
BsmAI	GTCTC	2 cut(s)	172, 676
BsmI	GAATGC	2 cut(s)	94, 301
BsnI	GGCC	3 cut(s)	186, 490, 641
Bsp1286I	GDGCHC	2 cut(s)	223, 306
Bsp143I	GATC	3 cut(s)	96, 419, 934
BspANI	GGCC	3 cut(s)	186, 490, 641
BspCNI	CTCAG	2 cut(s)	60, 548
BspHI	TCATGA	2 cut(s)	345, 777
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	282
BssMI	GATC	3 cut(s)	96, 419, 934
Bst4CI	ACNGT	2 cut(s)	313, 703
BstDEI	CTNAG	4 cut(s)	68, 518, 535, 950
BstF5I	GGATG	3 cut(s)	620, 651, 862
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	3 cut(s)	99, 422, 937
BstMAI	GTCTC	2 cut(s)	172, 676
BstMBI	GATC	3 cut(s)	96, 419, 934
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 404
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	8, 641
BstSFI	CTRYAG	2 cut(s)	195, 436
BstV1I	GCAGC	1 cut(s)	113
BsuRI	GGCC	3 cut(s)	186, 490, 641
BtsCI	GGATG	3 cut(s)	620, 651, 862
BtsIMutI	CAGTG	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	352
CciI	TCATGA	2 cut(s)	345, 777
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	309
CspAI	ACCGGT	1 cut(s)	282
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	4 cut(s)	68, 518, 535, 950
DpnI	GATC	3 cut(s)	98, 421, 936
DpnII	GATC	3 cut(s)	96, 419, 934
DraIII	CACNNNGTG	1 cut(s)	898
EaeI	YGGCCR	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	620
EcoT38I	GRGCYC	1 cut(s)	306
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	3 cut(s)	627, 658, 869
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	3 cut(s)	186, 490, 641
HapII	CCGG	3 cut(s)	9, 283, 642
HhaI	GCGC	1 cut(s)	427
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	4 cut(s)	502, 601, 889, 974
HpaII	CCGG	3 cut(s)	9, 283, 642
HphI	GGTGA	5 cut(s)	169, 176, 799, 898, 910
Hpy166II	GTNNAC	3 cut(s)	112, 532, 913
Hpy188I	TCNGA	1 cut(s)	573
Hpy188III	TCNNGA	4 cut(s)	149, 346, 778, 938
Hpy8I	GTNNAC	3 cut(s)	112, 532, 913
HpyAV	CCTTC	4 cut(s)	16, 164, 343, 898
HpyCH4III	ACNGT	2 cut(s)	313, 703
HpyCH4V	TGCA	7 cut(s)	92, 197, 299, 379, 407, 472, 618
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 404
HpyF3I	CTNAG	4 cut(s)	68, 518, 535, 950
HspAI	GCGC	1 cut(s)	425
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	3 cut(s)	96, 419, 934
LmnI	GCTCC	3 cut(s)	353, 710, 733
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	5 cut(s)	51, 366, 459, 605, 850
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	98, 421, 936
MboI	GATC	3 cut(s)	96, 419, 934
MboII	GAAGA	3 cut(s)	179, 397, 793
MhlI	GDGCHC	2 cut(s)	223, 306
MlsI	TGGCCA	1 cut(s)	186
MluNI	TGGCCA	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	8 cut(s)	12, 49, 541, 544, 586, 763, 766, 894
Mox20I	TGGCCA	1 cut(s)	186
Mph1103I	ATGCAT	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	2 cut(s)	276, 969
MslI	CAYNNNNRTG	2 cut(s)	782, 834
Msp20I	TGGCCA	1 cut(s)	186
MspI	CCGG	3 cut(s)	9, 283, 642
MspR9I	CCNGG	2 cut(s)	10, 643
Mva1269I	GAATGC	2 cut(s)	94, 301
MwoI	GCNNNNNNNGC	2 cut(s)	98, 404
NciI	CCSGG	2 cut(s)	10, 643
NdeII	GATC	3 cut(s)	96, 419, 934
NmuCI	GTSAC	1 cut(s)	190
NsiI	ATGCAT	1 cut(s)	620
NspI	RCATGY	1 cut(s)	328
PagI	TCATGA	2 cut(s)	345, 777
PceI	AGGCCT	1 cut(s)	490
PciI	ACATGT	1 cut(s)	324
PctI	GAATGC	2 cut(s)	94, 301
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	3 cut(s)	601, 889, 974
PinAI	ACCGGT	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
PscI	ACATGT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
RseI	CAYNNNNRTG	2 cut(s)	782, 834
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	276, 969
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	3 cut(s)	96, 419, 934
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	2 cut(s)	10, 643
SduI	GDGCHC	2 cut(s)	223, 306
SetI	ASST	9 cut(s)	106, 132, 175, 306, 366, 597, 777, 900, 951
SfaNI	GCATC	5 cut(s)	51, 366, 459, 605, 850
SfcI	CTRYAG	2 cut(s)	195, 436
SmiMI	CAYNNNNRTG	2 cut(s)	782, 834
SseBI	AGGCCT	1 cut(s)	490
SspI	AATATT	1 cut(s)	563
SspMI	CTAG	1 cut(s)	542
SstI	GAGCTC	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	2 cut(s)	8, 641
TaaI	ACNGT	2 cut(s)	313, 703
TaqI	TCGA	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	601, 889, 974
Tru1I	TTAA	2 cut(s)	276, 969
Tru9I	TTAA	2 cut(s)	276, 969
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	9 cut(s)	69, 251, 308, 334, 362, 510, 658, 794, 871
TspRI	CASTG	1 cut(s)	72
XceI	RCATGY	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	563
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.