Rh5CG170400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003267
Physical Location & Seq
Reverse (-)
15885713 .. 15887047
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG170400.1

Sequence Viewer

Length: 1335 bp
ATGCTTTCGGGGTATAAGAGTTTGGGGGATGTAGAGAAAGCACGCTCAGTGTTTGATCAAATGAAGCCGCGAGGTGTTAAGTCATGGAGTTGCATGATCGACGCGTATGTGAAGAATGGCGACAATGAGCATGGCGTAACGCTCTTTCGGAATATGGTGATTGAGGAAGGTATAAAGCCTGACATTGTAACTCTACTGCCGGTTTTATCAGTTTGCGCTGACATGGGTCCTTGTGGCTTGTTGCTTGGGAAGTCAGTTCATGGGTTTGTGGTGCGTCATGGGTTGAGATTGAGCGATTTGGTTGGTTCAGCTTTGGTTACTATGTATGCTAAGTGCCGGTTTTTGGACGCAGCGGCCAGGCTGTTGGCATTTTTGCAAGAGAGGGATTTGAAGACTTGGAATATGCATTTTTGTCGAACGGTGCAAAAGGGCTACACAAAAGGGCCGTTATATGTATTTGAGAATTTGCAAAAAGCCAGTGTGAGACCTAATGAGCTAACTTTCAAGGAAGTTCTTAATGCTAGTGTGCATTCAGGACTAGTCAAGGAGGGGCGGGAATATTTCAAGTTGATTGAAGGATGTGGTTTGAAGCCTAGTATTCAACACTATCGATCCATGGTCCAACTATATAGTAATGCAGGGCAGTTAGAAGAAGCATATAAGGTGATTAAGAACATGAAACTTGAATCTGATGTTGTGGTCTGGAGTTCTTTACTGTCTGCTTGTGAGAAGCACAGACAGTTTGGGATGGCGGAAAGAGTAGCTAAGGAGATCATGAAGACAGTGAAGCCAGACAGCAAAAGTCGTGTTCAGCTTCATTCTCTGGTCCAACTATATAGTAATGCTTATAAGGTTATTAAGAACACGAAAGTTGAACCTGATGTTGAGGCCTGGAGTTCTTTTCTGTCTGCTTGTAAGGAGCACAAACAGTTTGGGATGGCGGAAAGAGTAGCTAGGGAGGCCATGACAGTGAAGCCGGACAGCAAACATGGTGCTCCGCTTCATCCTCTGATCCAACTATATAGTCATGCAGGCCTGCTAGAGGAAGCTTATAAGGTTATTAAGGACATGAAACTTAAACCTTATGTTGCGTCCTGGACTTCTTTTCTATCTGCTTGTAAGGAGCACAAACAGTTTGGGATGGCTGAAAGAATAGCTGAGACGGTCATGATGACAGTGAAGCCGGACAGCAAACACGGTGCTCCGCTTCATTCTCATATCTCAGATATGAGGGATTTGAGAAAGTCAATGGCCAATCCAAATTTAGGGAAGATACATGATTTGCTGCAAAAATTTGACGAAGGCCAGGGAGCTATATGTTTTGATGCACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

444

Amino Acids

49.96

Weight (kDa)

9.21

Isoelectric Point (pI)

26.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 26 - 65 7e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 849, 1053
AccII CGCG 2 cut(s) 70, 104
AciI CCGC 7 cut(s) 68, 353, 553, 752, 941, 998, 1205
AclWI GGATC 2 cut(s) 606, 1006
AcoI YGGCCR 2 cut(s) 354, 1251
AcsI RAATTY 3 cut(s) 463, 1261, 1292
AfiI CCNNNNNNNGG 3 cut(s) 343, 1042, 1265
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 8 cut(s) 391, 505, 565, 575, 589, 602, 686, 875
AhlI ACTAGT 1 cut(s) 538
AjnI CCWGG 4 cut(s) 356, 890, 1094, 1305
AluBI AGCT 8 cut(s) 311, 496, 764, 814, 953, 1049, 1157, 1313
AluI AGCT 8 cut(s) 311, 496, 764, 814, 953, 1049, 1157, 1313
Alw21I GWGCWC 4 cut(s) 924, 997, 1128, 1204
Alw26I GTCTC 2 cut(s) 478, 1154
AlwI GGATC 2 cut(s) 606, 1006
AoxI GGCC 7 cut(s) 354, 443, 888, 960, 1033, 1251, 1303
ApeKI GCWGC 2 cut(s) 350, 1285
ApoI RAATTY 3 cut(s) 463, 1261, 1292
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 4 cut(s) 227, 443, 619, 826
AsuHPI GGTGA 2 cut(s) 169, 676
AvaII GGWCC 3 cut(s) 227, 619, 826
BalI TGGCCA 1 cut(s) 1253
BbsI GAAGAC 2 cut(s) 398, 785
Bbv12I GWGCWC 4 cut(s) 924, 997, 1128, 1204
BbvI GCAGC 2 cut(s) 362, 1272
BccI CCATC 3 cut(s) 742, 931, 1135
BceAI ACGGC 1 cut(s) 430
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 4 cut(s) 358, 892, 1096, 1307
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 478, 1154
BcuI ACTAGT 1 cut(s) 538
BfaI CTAG 5 cut(s) 522, 539, 594, 954, 1040
BisI GCNGC 4 cut(s) 68, 351, 354, 1286
BlsI GCNGC 4 cut(s) 69, 352, 355, 1287
Bme1390I CCNGG 4 cut(s) 358, 892, 1096, 1307
Bme18I GGWCC 3 cut(s) 227, 619, 826
BmgT120I GGNCC 4 cut(s) 227, 443, 619, 826
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 4 cut(s) 358, 892, 1096, 1307
BmsI GCATC 1 cut(s) 1315
BoxI GACNNNNGTC 1 cut(s) 225
BpiI GAAGAC 2 cut(s) 398, 785
BpmI CTGGAG 2 cut(s) 724, 913
Bpu10I CCTNAGC 1 cut(s) 765
Bsa29I ATCGAT 1 cut(s) 610
BsaI GGTCTC 1 cut(s) 478
BsaJI CCNNGG 2 cut(s) 615, 1306
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 1042, 1265
Bse118I RCCGGY 2 cut(s) 199, 336
Bse1I ACTGG 1 cut(s) 477
BseBI CCWGG 4 cut(s) 358, 892, 1096, 1307
BseCI ATCGAT 1 cut(s) 610
BseDI CCNNGG 2 cut(s) 615, 1306
BseGI GGATG 6 cut(s) 34, 584, 753, 942, 1003, 1146
BseLI CCNNNNNNNGG 3 cut(s) 343, 1042, 1265
BseMII CTCAG 3 cut(s) 60, 1149, 1236
BseNI ACTGG 1 cut(s) 477
BseXI GCAGC 2 cut(s) 362, 1272
Bsh1236I CGCG 2 cut(s) 70, 104
BshFI GGCC 7 cut(s) 356, 445, 890, 962, 1035, 1253, 1305
BshVI ATCGAT 1 cut(s) 610
BsiHKAI GWGCWC 4 cut(s) 924, 997, 1128, 1204
BsiSI CCGG 4 cut(s) 200, 337, 977, 1184
BslI CCNNNNNNNGG 3 cut(s) 343, 1042, 1265
BsmAI GTCTC 2 cut(s) 478, 1154
BsmBI CGTCTC 1 cut(s) 1154
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 7 cut(s) 356, 445, 890, 962, 1035, 1253, 1305
Bso31I GGTCTC 1 cut(s) 478
Bsp1286I GDGCHC 4 cut(s) 924, 997, 1128, 1204
Bsp143I GATC 5 cut(s) 55, 96, 611, 771, 1011
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 7 cut(s) 68, 353, 553, 752, 941, 998, 1205
BspANI GGCC 7 cut(s) 356, 445, 890, 962, 1035, 1253, 1305
BspCNI CTCAG 3 cut(s) 59, 1150, 1235
BspDI ATCGAT 1 cut(s) 610
BspFNI CGCG 2 cut(s) 70, 104
BspHI TCATGA 2 cut(s) 774, 1167
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 2 cut(s) 606, 1006
BspTNI GGTCTC 1 cut(s) 478
BsrFI RCCGGY 2 cut(s) 199, 336
BsrI ACTGG 1 cut(s) 477
BssAI RCCGGY 2 cut(s) 199, 336
BssECI CCNNGG 2 cut(s) 615, 1306
BssMI GATC 5 cut(s) 55, 96, 611, 771, 1011
BssT1I CCWWGG 1 cut(s) 615
Bst2UI CCWGG 4 cut(s) 358, 892, 1096, 1307
BstC8I GCNNGC 3 cut(s) 43, 1033, 1037
BstDEI CTNAG 5 cut(s) 46, 330, 765, 1158, 1222
BstDSI CCRYGG 1 cut(s) 615
BstENI CCTNNNNNAGG 1 cut(s) 1040
BstF5I GGATG 6 cut(s) 34, 584, 753, 942, 1003, 1146
BstFNI CGCG 2 cut(s) 70, 104
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 5 cut(s) 58, 99, 614, 774, 1014
BstMAI GTCTC 2 cut(s) 478, 1154
BstMBI GATC 5 cut(s) 55, 96, 611, 771, 1011
BstMWI GCNNNNNNNGC 1 cut(s) 959
BstNI CCWGG 4 cut(s) 358, 892, 1096, 1307
BstPAI GACNNNNGTC 1 cut(s) 225
BstSCI CCNGG 4 cut(s) 356, 890, 1094, 1305
BstUI CGCG 2 cut(s) 70, 104
BstV1I GCAGC 2 cut(s) 362, 1272
BstV2I GAAGAC 2 cut(s) 398, 785
BstXI CCANNNNNNTGG 1 cut(s) 364
Bsu15I ATCGAT 1 cut(s) 610
BsuRI GGCC 7 cut(s) 356, 445, 890, 962, 1035, 1253, 1305
BsuTUI ATCGAT 1 cut(s) 610
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 6 cut(s) 34, 584, 753, 942, 1003, 1146
BtsIMutI CAGTG 5 cut(s) 54, 484, 789, 975, 1182
Cac8I GCNNGC 3 cut(s) 43, 1033, 1037
CciI TCATGA 2 cut(s) 774, 1167
CfoI GCGC 1 cut(s) 218
Cfr10I RCCGGY 2 cut(s) 199, 336
Cfr13I GGNCC 4 cut(s) 227, 443, 619, 826
ClaI ATCGAT 1 cut(s) 610
CseI GACGC 4 cut(s) 110, 263, 356, 1080
DdeI CTNAG 5 cut(s) 46, 330, 765, 1158, 1222
DpnI GATC 5 cut(s) 57, 98, 613, 773, 1013
DpnII GATC 5 cut(s) 55, 96, 611, 771, 1011
EaeI YGGCCR 2 cut(s) 354, 1251
EciI GGCGGA 2 cut(s) 767, 956
Eco130I CCWWGG 1 cut(s) 615
Eco147I AGGCCT 2 cut(s) 890, 1035
Eco31I GGTCTC 1 cut(s) 478
Eco47I GGWCC 3 cut(s) 227, 619, 826
EcoNI CCTNNNNNAGG 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 4 cut(s) 356, 890, 1094, 1305
EcoT14I CCWWGG 1 cut(s) 615
EcoT22I ATGCAT 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 615
Esp3I CGTCTC 1 cut(s) 1154
FauI CCCGC 1 cut(s) 546
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 4 cut(s) 68, 351, 354, 1286
FokI GGATG 6 cut(s) 41, 591, 760, 949, 990, 1153
Fsp4HI GCNGC 4 cut(s) 68, 351, 354, 1286
FspBI CTAG 5 cut(s) 522, 539, 594, 954, 1040
GlaI GCGC 1 cut(s) 217
GluI GCNGC 4 cut(s) 68, 351, 354, 1286
GsuI CTGGAG 2 cut(s) 724, 913
HaeIII GGCC 7 cut(s) 356, 445, 890, 962, 1035, 1253, 1305
HapII CCGG 4 cut(s) 200, 337, 977, 1184
HgaI GACGC 4 cut(s) 110, 263, 356, 1080
HhaI GCGC 1 cut(s) 218
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HindIII AAGCTT 1 cut(s) 1047
HinfI GANTC 1 cut(s) 686
HpaII CCGG 4 cut(s) 200, 337, 977, 1184
HphI GGTGA 2 cut(s) 169, 676
Hpy188I TCNGA 4 cut(s) 150, 691, 1011, 1225
Hpy188III TCNNGA 4 cut(s) 534, 703, 775, 1168
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 161, 569, 1295
HpyF10VI GCNNNNNNNGC 1 cut(s) 959
HpyF3I CTNAG 5 cut(s) 46, 330, 765, 1158, 1222
HspAI GCGC 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 5 cut(s) 55, 96, 611, 771, 1011
LmnI GCTCC 5 cut(s) 919, 1000, 1123, 1207, 1310
Lsp1109I GCAGC 2 cut(s) 362, 1272
LweI GCATC 1 cut(s) 1315
MaeI CTAG 5 cut(s) 522, 539, 594, 954, 1040
MaeIII GTNAC 3 cut(s) 136, 187, 316
MalI GATC 5 cut(s) 57, 98, 613, 773, 1013
MboI GATC 5 cut(s) 55, 96, 611, 771, 1011
MboII GAAGA 5 cut(s) 124, 403, 662, 790, 1282
MhlI GDGCHC 4 cut(s) 924, 997, 1128, 1204
MlsI TGGCCA 1 cut(s) 1253
MluCI AATT 3 cut(s) 463, 1261, 1292
MluI ACGCGT 1 cut(s) 102
MluNI TGGCCA 1 cut(s) 1253
MmeI TCCRAC 3 cut(s) 646, 853, 1039
MnlI CCTC 9 cut(s) 65, 157, 375, 541, 880, 952, 1017, 1036, 1224
Mox20I TGGCCA 1 cut(s) 1253
Mph1103I ATGCAT 1 cut(s) 408
MscI TGGCCA 1 cut(s) 1253
MseI TTAA 6 cut(s) 78, 516, 669, 858, 1062, 1077
MslI CAYNNNNRTG 1 cut(s) 968
Msp20I TGGCCA 1 cut(s) 1253
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 4 cut(s) 200, 337, 977, 1184
MspR9I CCNGG 4 cut(s) 358, 892, 1096, 1307
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 4 cut(s) 358, 892, 1096, 1307
MvnI CGCG 2 cut(s) 70, 104
MwoI GCNNNNNNNGC 1 cut(s) 959
NcoI CCATGG 1 cut(s) 615
NdeII GATC 5 cut(s) 55, 96, 611, 771, 1011
NlaIV GGNNCC 1 cut(s) 228
NsiI ATGCAT 1 cut(s) 408
PagI TCATGA 2 cut(s) 774, 1167
PceI AGGCCT 2 cut(s) 890, 1035
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 686
PfoI TCCNGGA 1 cut(s) 1094
PkrI GCNGC 4 cut(s) 69, 352, 355, 1287
PpuMI RGGWCCY 1 cut(s) 227
PshAI GACNNNNGTC 1 cut(s) 225
PsiI TTATAA 2 cut(s) 849, 1053
Psp5II RGGWCCY 1 cut(s) 227
Psp6I CCWGG 4 cut(s) 356, 890, 1094, 1305
PspGI CCWGG 4 cut(s) 356, 890, 1094, 1305
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 4 cut(s) 227, 443, 619, 826
PspPPI RGGWCCY 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 968
SaqAI TTAA 6 cut(s) 78, 516, 669, 858, 1062, 1077
SatI GCNGC 4 cut(s) 68, 351, 354, 1286
Sau3AI GATC 5 cut(s) 55, 96, 611, 771, 1011
Sau96I GGNCC 4 cut(s) 227, 443, 619, 826
ScrFI CCNGG 4 cut(s) 358, 892, 1096, 1307
SduI GDGCHC 4 cut(s) 924, 997, 1128, 1204
SfaNI GCATC 1 cut(s) 1315
SinI GGWCC 3 cut(s) 227, 619, 826
SmiMI CAYNNNNRTG 1 cut(s) 968
SpeI ACTAGT 1 cut(s) 538
Sse9I AATT 3 cut(s) 463, 1261, 1292
SseBI AGGCCT 2 cut(s) 890, 1035
SsiI CCGC 7 cut(s) 68, 353, 553, 752, 941, 998, 1205
SspI AATATT 1 cut(s) 560
SspMI CTAG 5 cut(s) 522, 539, 594, 954, 1040
StuI AGGCCT 2 cut(s) 890, 1035
StyD4I CCNGG 4 cut(s) 356, 890, 1094, 1305
StyI CCWWGG 1 cut(s) 615
TaqI TCGA 3 cut(s) 99, 415, 610
TasI AATT 3 cut(s) 463, 1261, 1292
TauI GCSGC 2 cut(s) 70, 356
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 6 cut(s) 78, 516, 669, 858, 1062, 1077
Tru9I TTAA 6 cut(s) 78, 516, 669, 858, 1062, 1077
TscAI CASTG 5 cut(s) 54, 484, 789, 975, 1182
TseI GCWGC 2 cut(s) 350, 1285
TspDTI ATGAA 8 cut(s) 77, 248, 692, 791, 806, 992, 1085, 1199
TspRI CASTG 5 cut(s) 54, 484, 789, 975, 1182
VpaK11BI GGWCC 3 cut(s) 227, 619, 826
XagI CCTNNNNNAGG 1 cut(s) 1040
XapI RAATTY 3 cut(s) 463, 1261, 1292
XspI CTAG 5 cut(s) 522, 539, 594, 954, 1040
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.