Rh7CG345400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003267
Physical Location & Seq
Reverse (-)
38972307 .. 38975996
3690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG345400.1

Sequence Viewer

Length: 1338 bp
ATGAGTCGAATGCAATCCATAGCCAAACTCTCAAACCATCTTATCAAACCCACAAACCACGCCTTCTGTTGGTGCCTCAAAAGCTACAACTCATGGGCTGCAGCCATACGCAGCTCTTCTTCCCCACATAAAGCTCTGCATATCTATTCTCAAATGCACCGGCAGTCTGTACCTTTCGACAGCTTCTCCATTCTCTTTACTCTAAAATCATGTACCCAATTGCATAACCACGCAACCATTCAACACCTCCATTCCCAAATCGTTAAACTGGGGTTTGATTCTCACGTATACGTGGCCACTGCCCTTCTCCATGCTTACGTTGTCGTCTCGTTTGTGGATGCATGTAAACTGTTCGACGAAATGCCTGAGAAGAGCACAGTCACCTGGAACACAATGATTTCTGGGTATTCGAGGACCGGGAATGTAGAGAGAGCAACACTGGTGTTTGAGAAAATGCCAGTGAGAGATGTTTCATCATGGTGTGCAATGATCGCAGCCTATGTGAACAATGGCAAACATGAGCTTGGGTTATCACTGTTTCGGGATATGGTAATGGCTGAAGAAGGTGTGAAACCTGACCAAGTGACTGCAGTAGTGGTTTTATCTGGCTGTGCTCACTTGGGCTCTGTTGGGTTGTTGGTGGGGAAGTCAGTTCATGGGTTTATGGTCAAGAATCGGTGGGAAATGAATGCGGAGCTCGGTACAGTTTTGATCAGCATGTATGCGAAATGTGGGCTTTTAAAGGGAGCAGAACAGGTTTTTGAGTTGATGCAAGAGAAGAATGTGATGGCTTGGACTGCATTGATTTGTGGATCAGCACAACATGGCTACAGCAAAGAAGCATTGTGTTTGTTTGAGACAATGCATAAAGCCGGTGTAAGACCTAATGAACTGACTTTTACAGGAGTTCTTAGTGCTTGTGTGAACACGGGACTAGTTGATGAGGGTCGAAAATATTTCAATCTGATTCAAGAAAGTGGCTTGGAGCTTAGGATTCAGCATTATGGATGCATGGTCGATTTGTATGGCAAGGTGGGGCTGTTAGAGGAAGCGTATGATTTTATTAAGAACATGAAACTTGAACCCAATATTGCTGTCTGGGGAGCTTTTTTGTCGGCTTGTAAGGAGCATAAGCAGTTTGAGATGGCCGAAAGAGTAGTTGAGCAGGTCATGAAGATGGTGAAACCAGAAAATGATAGTGGGGTTTACTCTCTTATTGCCGATTTGTATGTTTTGGGTGGGAAGTGGAATGATGCTGAAAGAGTGAGGAGTCTGATGGTGAACCACAAGGTGAGGAAGGTCAGGGGCTCTAGTTTTATTCAAGTGGATGGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

445

Amino Acids

49.79

Weight (kDa)

8.49

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 125 - 157 5e-07 PPR repeat family
PPR_1 PF12854 126 - 152 1.4e-06 PPR repeat
PPR PF01535 127 - 155 4e-08 PPR repeat
PPR_2 PF13041 156 - 206 2.7e-08 PPR repeat family
PPR_2 PF13041 260 - 309 6.6e-11 PPR repeat family
PPR_3 PF13812 261 - 309 2.8e-06 Pentatricopeptide repeat domain
E_motif PF20431 377 - 441 3.1e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1156
AccB1I GGYRCC 1 cut(s) 72
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 692
AclWI GGATC 1 cut(s) 820
AcoI YGGCCR 2 cut(s) 294, 1146
AcuI CTGAAG 1 cut(s) 579
AdeI CACNNNGTG 1 cut(s) 1291
AfaI GTAC 3 cut(s) 171, 214, 703
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 5 cut(s) 242, 961, 971, 1082, 1322
AhlI ACTAGT 1 cut(s) 934
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 8 cut(s) 84, 114, 134, 183, 523, 697, 988, 1106
AluI AGCT 8 cut(s) 84, 114, 134, 183, 523, 697, 988, 1106
Alw21I GWGCWC 3 cut(s) 377, 616, 699
Alw26I GTCTC 2 cut(s) 331, 851
AlwI GGATC 1 cut(s) 820
AoxI GGCC 2 cut(s) 294, 1146
ApeKI GCWGC 4 cut(s) 98, 101, 111, 494
AspS9I GGNCC 1 cut(s) 414
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 4 cut(s) 373, 1192, 1291, 1303
AvaII GGWCC 1 cut(s) 414
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 3 cut(s) 626, 699, 1310
Bbv12I GWGCWC 3 cut(s) 377, 616, 699
BbvI GCAGC 4 cut(s) 85, 113, 123, 506
BccI CCATC 6 cut(s) 45, 781, 1138, 1171, 1270, 1322
BciT130I CCWGG 1 cut(s) 385
BclI TGATCA 1 cut(s) 711
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 331, 851
BcuI ACTAGT 1 cut(s) 934
BfaI CTAG 2 cut(s) 935, 1311
BfmI CTRYAG 3 cut(s) 99, 588, 829
BfuAI ACCTGC 1 cut(s) 1156
BisI GCNGC 4 cut(s) 99, 102, 112, 495
BlsI GCNGC 4 cut(s) 100, 103, 113, 496
Bme1390I CCNGG 2 cut(s) 385, 418
Bme18I GGWCC 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 2 cut(s) 385, 418
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 4 cut(s) 328, 759, 998, 1243
BmuI ACTGGG 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 989
BpuMI CCSGG 1 cut(s) 418
BsaAI YACGTR 2 cut(s) 286, 292
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 2 cut(s) 159, 872
Bse1I ACTGG 3 cut(s) 273, 444, 458
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 1 cut(s) 385
BseGI GGATG 3 cut(s) 343, 1013, 1333
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 3 cut(s) 273, 444, 458
BseRI GAGGAG 1 cut(s) 1282
BseXI GCAGC 4 cut(s) 85, 113, 123, 506
BshFI GGCC 2 cut(s) 296, 1148
BshNI GGYRCC 1 cut(s) 72
BsiHKAI GWGCWC 3 cut(s) 377, 616, 699
BsiSI CCGG 3 cut(s) 160, 417, 873
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 331, 851
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 945
BsmI GAATGC 2 cut(s) 15, 694
BsnI GGCC 2 cut(s) 296, 1148
Bsp1286I GDGCHC 5 cut(s) 377, 616, 626, 699, 1310
Bsp143I GATC 3 cut(s) 489, 711, 812
BspACI CCGC 1 cut(s) 692
BspANI GGCC 2 cut(s) 296, 1148
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 1170
BspLI GGNNCC 1 cut(s) 74
BspMAI CTGCAG 2 cut(s) 103, 592
BspMI ACCTGC 1 cut(s) 1156
BspPI GGATC 1 cut(s) 820
BspQI GCTCTTC 2 cut(s) 121, 365
BspT107I GGYRCC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 2 cut(s) 159, 872
BsrI ACTGG 3 cut(s) 273, 444, 458
BssAI RCCGGY 2 cut(s) 159, 872
BssMI GATC 3 cut(s) 489, 711, 812
BssNAI GTATAC 1 cut(s) 289
Bst1107I GTATAC 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 4 cut(s) 351, 379, 537, 706
Bst6I CTCTTC 2 cut(s) 121, 365
BstBAI YACGTR 2 cut(s) 286, 292
BstDEI CTNAG 3 cut(s) 366, 911, 989
BstF5I GGATG 3 cut(s) 343, 1013, 1333
BstKTI GATC 3 cut(s) 492, 714, 815
BstMAI GTCTC 2 cut(s) 331, 851
BstMBI GATC 3 cut(s) 489, 711, 812
BstMWI GCNNNNNNNGC 3 cut(s) 81, 491, 797
BstNI CCWGG 1 cut(s) 385
BstNSI RCATGY 2 cut(s) 345, 721
BstSCI CCNGG 2 cut(s) 383, 416
BstSFI CTRYAG 3 cut(s) 99, 588, 829
BstV1I GCAGC 4 cut(s) 85, 113, 123, 506
BstZ17I GTATAC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 296, 1148
BtsCI GGATG 3 cut(s) 343, 1013, 1333
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 4 cut(s) 297, 437, 465, 533
BveI ACCTGC 1 cut(s) 1156
CciI TCATGA 1 cut(s) 1170
Cfr10I RCCGGY 2 cut(s) 159, 872
Cfr13I GGNCC 1 cut(s) 414
Csp6I GTAC 3 cut(s) 170, 213, 702
CviQI GTAC 3 cut(s) 170, 213, 702
DdeI CTNAG 3 cut(s) 366, 911, 989
DpnI GATC 3 cut(s) 491, 713, 814
DpnII GATC 3 cut(s) 489, 711, 812
DraI TTTAAA 1 cut(s) 741
DraIII CACNNNGTG 1 cut(s) 1291
EaeI YGGCCR 2 cut(s) 294, 1146
Eam1104I CTCTTC 2 cut(s) 121, 365
EarI CTCTTC 2 cut(s) 121, 365
Ecl136II GAGCTC 1 cut(s) 697
Eco24I GRGCYC 3 cut(s) 626, 699, 1310
Eco47I GGWCC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 579
EcoICRI GAGCTC 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 383
EcoT22I ATGCAT 3 cut(s) 343, 867, 1013
EcoT38I GRGCYC 3 cut(s) 626, 699, 1310
Esp3I CGTCTC 1 cut(s) 331
FaqI GGGAC 1 cut(s) 945
FbaI TGATCA 1 cut(s) 711
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 4 cut(s) 99, 102, 112, 495
FokI GGATG 2 cut(s) 350, 1020
FriOI GRGCYC 3 cut(s) 626, 699, 1310
Fsp4HI GCNGC 4 cut(s) 99, 102, 112, 495
FspBI CTAG 2 cut(s) 935, 1311
GluI GCNGC 4 cut(s) 99, 102, 112, 495
HaeIII GGCC 2 cut(s) 296, 1148
HapII CCGG 3 cut(s) 160, 417, 873
HinfI GANTC 6 cut(s) 4, 278, 673, 967, 994, 1270
HpaII CCGG 3 cut(s) 160, 417, 873
HphI GGTGA 4 cut(s) 373, 1192, 1291, 1303
Hpy166II GTNNAC 6 cut(s) 289, 347, 505, 925, 1207, 1282
Hpy188I TCNGA 2 cut(s) 966, 1275
Hpy188III TCNNGA 4 cut(s) 542, 670, 971, 1171
Hpy8I GTNNAC 6 cut(s) 289, 347, 505, 925, 1207, 1282
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 4 cut(s) 73, 314, 557, 1291
HpyCH4III ACNGT 4 cut(s) 351, 379, 537, 706
HpyCH4IV ACGT 3 cut(s) 285, 291, 318
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 491, 797
HpyF3I CTNAG 3 cut(s) 366, 911, 989
HpySE526I ACGT 3 cut(s) 285, 291, 318
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 3 cut(s) 489, 711, 812
LguI GCTCTTC 2 cut(s) 121, 365
LmnI GCTCC 5 cut(s) 694, 746, 985, 1103, 1126
Lsp1109I GCAGC 4 cut(s) 85, 113, 123, 506
LweI GCATC 4 cut(s) 328, 759, 998, 1243
MaeI CTAG 2 cut(s) 935, 1311
MaeII ACGT 3 cut(s) 285, 291, 318
MaeIII GTNAC 2 cut(s) 379, 583
MalI GATC 3 cut(s) 491, 713, 814
MboI GATC 3 cut(s) 489, 711, 812
MboII GAAGA 6 cut(s) 108, 111, 382, 572, 790, 1186
MfeI CAATTG 1 cut(s) 218
MhlI GDGCHC 5 cut(s) 377, 616, 626, 699, 1310
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 1 cut(s) 218
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 2 cut(s) 13, 1279
MnlI CCTC 7 cut(s) 86, 257, 405, 937, 1039, 1260, 1287
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 3 cut(s) 343, 867, 1013
MscI TGGCCA 1 cut(s) 296
MseI TTAA 3 cut(s) 264, 740, 1065
MslI CAYNNNNRTG 2 cut(s) 478, 1175
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 3 cut(s) 160, 417, 873
MspR9I CCNGG 2 cut(s) 385, 418
MunI CAATTG 1 cut(s) 218
Mva1269I GAATGC 2 cut(s) 15, 694
MvaI CCWGG 1 cut(s) 385
MwoI GCNNNNNNNGC 3 cut(s) 81, 491, 797
NciI CCSGG 1 cut(s) 418
NdeII GATC 3 cut(s) 489, 711, 812
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 2 cut(s) 379, 583
NsiI ATGCAT 3 cut(s) 343, 867, 1013
NspI RCATGY 2 cut(s) 345, 721
PagI TCATGA 1 cut(s) 1170
PciSI GCTCTTC 2 cut(s) 121, 365
PctI GAATGC 2 cut(s) 15, 694
PfeI GAWTC 4 cut(s) 278, 673, 967, 994
PkrI GCNGC 4 cut(s) 100, 103, 113, 496
PleI GAGTC 2 cut(s) 12, 1278
PpsI GAGTC 2 cut(s) 12, 1278
Ppu21I YACGTR 2 cut(s) 286, 292
Psp124BI GAGCTC 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 1 cut(s) 414
PstI CTGCAG 2 cut(s) 103, 592
RsaI GTAC 3 cut(s) 171, 214, 703
RsaNI GTAC 3 cut(s) 170, 213, 702
RseI CAYNNNNRTG 2 cut(s) 478, 1175
SacI GAGCTC 1 cut(s) 699
SapI GCTCTTC 2 cut(s) 121, 365
SaqAI TTAA 3 cut(s) 264, 740, 1065
SatI GCNGC 4 cut(s) 99, 102, 112, 495
Sau3AI GATC 3 cut(s) 489, 711, 812
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 2 cut(s) 13, 1279
ScrFI CCNGG 2 cut(s) 385, 418
SduI GDGCHC 5 cut(s) 377, 616, 626, 699, 1310
SfaNI GCATC 4 cut(s) 328, 759, 998, 1243
SfcI CTRYAG 3 cut(s) 99, 588, 829
SinI GGWCC 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 478, 1175
SpeI ACTAGT 1 cut(s) 934
Sse9I AATT 1 cut(s) 218
SsiI CCGC 1 cut(s) 692
SspI AATATT 2 cut(s) 956, 1090
SspMI CTAG 2 cut(s) 935, 1311
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 2 cut(s) 383, 416
TaaI ACNGT 4 cut(s) 351, 379, 537, 706
TaiI ACGT 3 cut(s) 288, 294, 321
TaqI TCGA 6 cut(s) 7, 177, 354, 410, 949, 1017
TasI AATT 1 cut(s) 218
TfiI GAWTC 4 cut(s) 278, 673, 967, 994
Tru1I TTAA 3 cut(s) 264, 740, 1065
Tru9I TTAA 3 cut(s) 264, 740, 1065
TscAI CASTG 4 cut(s) 304, 444, 465, 540
TseFI GTSAC 2 cut(s) 379, 583
TseI GCWGC 4 cut(s) 98, 101, 111, 494
Tsp45I GTSAC 2 cut(s) 379, 583
TspDTI ATGAA 6 cut(s) 462, 644, 701, 903, 1088, 1187
TspRI CASTG 4 cut(s) 304, 444, 465, 540
VpaK11BI GGWCC 1 cut(s) 414
XceI RCATGY 2 cut(s) 345, 721
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 2 cut(s) 935, 1311
Zsp2I ATGCAT 3 cut(s) 343, 867, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.