Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023070.1

Orthogroup ID

OG0003267

Physical Location & Seq

Genomic Coordinates Reverse (-)

18733 .. 19056

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023070.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atggtcgatttgtatggcaaggtggggctgttagcggaagcctatgattttattaagaacatgagacttgaacccaatattgctgtctggggagcttttttgtcggcttgcaaggagcataaacagtttgagatggccgaaagagttgttgaggaggttatgaagatggtgaaaccagagaatgatagtggggtttactttcttatcgccggtttgtatgttttgggtggaaagtgggatgatgctgaaagagtgaggaaattaatggtgaaccacaaggtgaggaaggttaggggctctagttttgttcaagtggatagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

107

Amino Acids

12.23

Weight (kDa)

7.84

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13211 FvH4_3g13220
malus_domestica	MD10G1225900.v1.1
prunus_persica	Prupe.4G119500_v2.0.a1 Prupe.4G119600_v2.0.a1
pyrus_communis	pycom10g18980
rosa_chinensis	RchiOBHm_Chr5g0021561 RchiOBHm_Chr5g0021571 RchiOBHm_Chr7g0219451
rosa_laevigata	RLG00000032615
rosa_multiflora	Rmu_co8317561.1_g000001 Rmu_co8317561.1_g000002 Rmu_co8347725.1_g000001 Rmu_sc0002052.1_g000015 Rmu_sc0002052.1_g000016 Rmu_sc0002052.1_g000017 Rmu_sc0003767.1_g000012 Rmu_sc0023070.1_g000006 Rmu_sc0023070.1_g000007 Rmu_sc0023070.1_g000008
rosa_roxburghii	Rroxscaffold_1G00057070 Rroxscaffold_1G00057080 Rroxscaffold_1G00057090
rosa_rugosa	Rorug05G0067400 Rorug05G0067400 Rorug07G0185200
rosa_samantha	Rh5AG156800 Rh5BG156000 Rh5BG156100 Rh5BG156200 Rh5CG170300 Rh5CG170400 Rh5DG156600 Rh7AG328000 Rh7BG318000 Rh7CG345400
rosa_wichuraiana	Rw7G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	71, 311
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	135
AseI	ATTAAT	1 cut(s)	263
AsuHPI	GGTGA	3 cut(s)	181, 280, 292
BanII	GRGCYC	1 cut(s)	299
BccI	CCATC	2 cut(s)	127, 160
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	209
BseGI	GGATG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	299
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	209
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	6 cut(s)	28, 41, 95, 107, 137, 297
CviKI_1	RGCY	6 cut(s)	28, 41, 95, 107, 137, 297
DraIII	CACNNNGTG	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	1 cut(s)	64
FaiI	YATR	6 cut(s)	15, 45, 62, 120, 161, 219
FatI	CATG	1 cut(s)	60
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	1 cut(s)	299
FspBI	CTAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	1 cut(s)	64
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	3 cut(s)	181, 280, 292
Hpy166II	GTNNAC	2 cut(s)	196, 271
Hpy8I	GTNNAC	2 cut(s)	196, 271
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	92, 115
LpnPI	CCDG	3 cut(s)	73, 189, 223
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	300
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	4 cut(s)	145, 148, 249, 276
MseI	TTAA	2 cut(s)	54, 263
MspI	CCGG	1 cut(s)	210
NlaIII	CATG	1 cut(s)	64
PshBI	ATTAAT	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	54, 263
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	5 cut(s)	24, 97, 159, 282, 291
SfaNI	GCATC	1 cut(s)	232
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	6
TasI	AATT	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	54, 263
Tru9I	TTAA	2 cut(s)	54, 263
TspDTI	ATGAA	1 cut(s)	176
VspI	ATTAAT	1 cut(s)	263
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.