Rorug07G0185200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003267
Physical Location & Seq
Forward (+)
15504437 .. 15505949
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0185200.1

Sequence Viewer

Length: 789 bp
ATGAGTACTTTTGAGGAACCGGAGAAGAAAGTGGTATCAGTTGGACCATGGGGAGGCCAAACTGGGCTCATGTGGGATGACGGAGTTTACTCAACGGTAAGGCAATTAGTGATAGCTCATGGCTCTGGGATTGACTCCATCCAGATTGAGTATGATAGCAAAGGGTGCTCATTTTGGTCAGACAAGCATGGTGGAAATGGAGGCTGGAAAACAGACAAGGTGAAGCTTGATTATCCAGAGGAATTTTTGACTTCAATTCATGGGTATTATGGCAAGATAAGTGAATGGGGGACAGTCTCAGTCCGATCGCTTACTTTCAAGAGCAACAAAAGATCTTATGGACCTTTTGGAATTGAACAAGGAAACTATTTTTCACTTCCAGTGACAACTGGTAACAAAATTGTTGGGTTTCATGGGAGGTCTGGCTGGTATCTTGATGCAATAGGAGCTTACCTCAAGCCGATTCAGAATGATCAAAACCACTACAACGTAGTTATGGCTCACACACAGTACAGTTATATGACTGGTGGCGCTGACATCCCTGCTGGCTACTCACTACTCCAAAACTGTGATGTGTTTCTCGCTATAAGACCCGAGGATGATCCCATTACTACAAACCCTGCAGCTTCAATGCCCAACAAGCTCTTTAGGCAGTTTTCTAATTCTTCAGTGCCCACGGCCGACGTCGGCCCATCATCAAGCCCACAGCTAGCGCTGTTAGATCTTCAAACGCATAGCTTGGTTTCAGTCCTGGAACATGTCCTTCATTGTTCATACCTATTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

262

Amino Acids

28.88

Weight (kDa)

5.89

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 14 - 151 2e-48 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 687
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 1 cut(s) 678
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 2 cut(s) 7, 512
AfeI AGCGCT 1 cut(s) 714
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 757
AgsI TTSAA 5 cut(s) 255, 319, 356, 630, 728
AjnI CCWGG 1 cut(s) 750
AluBI AGCT 7 cut(s) 116, 226, 449, 626, 643, 709, 738
AluI AGCT 7 cut(s) 116, 226, 449, 626, 643, 709, 738
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 593
Aor51HI AGCGCT 1 cut(s) 714
AoxI GGCC 3 cut(s) 55, 678, 688
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 1 cut(s) 242
AspLEI GCGC 2 cut(s) 533, 715
AspS9I GGNCC 3 cut(s) 44, 341, 689
AsuHPI GGTGA 1 cut(s) 232
AsuNHI GCTAGC 1 cut(s) 709
AvaI CYCGRG 1 cut(s) 593
AvaII GGWCC 2 cut(s) 44, 341
BaeGI GKGCMC 1 cut(s) 675
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 635
BccI CCATC 2 cut(s) 146, 700
BceAI ACGGC 1 cut(s) 693
BciT130I CCWGG 1 cut(s) 752
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 2 cut(s) 534, 716
BglII AGATCT 2 cut(s) 332, 721
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 752
Bme18I GGWCC 2 cut(s) 44, 341
BmeT110I CYCGRG 1 cut(s) 593
BmgT120I GGNCC 3 cut(s) 44, 341, 689
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 752
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 427
BmtI GCTAGC 1 cut(s) 713
BmuI ACTGGG 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 438, 470
BpuEI CTTGAG 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 3 cut(s) 47, 594, 675
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 4 cut(s) 67, 380, 394, 529
BseBI CCWGG 1 cut(s) 752
BseDI CCNNGG 3 cut(s) 47, 594, 675
BseGI GGATG 4 cut(s) 82, 138, 537, 604
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 4 cut(s) 67, 380, 394, 529
BseSI GKGCMC 1 cut(s) 675
BseX3I CGGCCG 1 cut(s) 678
BseXI GCAGC 1 cut(s) 635
Bsh1285I CGRYCG 2 cut(s) 308, 681
BshFI GGCC 3 cut(s) 57, 680, 690
BsiEI CGRYCG 2 cut(s) 308, 681
BsiHKAI GWGCWC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 3 cut(s) 57, 680, 690
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 3 cut(s) 69, 170, 675
Bsp143I GATC 5 cut(s) 305, 332, 472, 601, 721
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 3 cut(s) 57, 680, 690
BspCNI CTCAG 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 625
BspOI GCTAGC 1 cut(s) 713
BspPI GGATC 1 cut(s) 596
BsrI ACTGG 4 cut(s) 67, 380, 394, 529
BssECI CCNNGG 3 cut(s) 47, 594, 675
BssMI GATC 5 cut(s) 305, 332, 472, 601, 721
BssNI GRCGYC 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 5 cut(s) 97, 295, 510, 515, 569
BstACI GRCGYC 1 cut(s) 684
BstAPI GCANNNNNTGC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 547, 711
BstDEI CTNAG 1 cut(s) 298
BstDSI CCRYGG 2 cut(s) 47, 675
BstF5I GGATG 4 cut(s) 82, 138, 537, 604
BstH2I RGCGCY 2 cut(s) 534, 716
BstHHI GCGC 2 cut(s) 533, 715
BstKTI GATC 5 cut(s) 308, 335, 475, 604, 724
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 5 cut(s) 305, 332, 472, 601, 721
BstMCI CGRYCG 2 cut(s) 308, 681
BstMWI GCNNNNNNNGC 4 cut(s) 165, 446, 640, 649
BstNI CCWGG 1 cut(s) 752
BstNSI RCATGY 1 cut(s) 761
BstSCI CCNGG 1 cut(s) 750
BstSFI CTRYAG 1 cut(s) 621
BstSLI GKGCMC 1 cut(s) 675
BstV1I GCAGC 1 cut(s) 635
BstX2I RGATCY 2 cut(s) 332, 721
BstYI RGATCY 2 cut(s) 332, 721
BstZI CGGCCG 1 cut(s) 678
BsuRI GGCC 3 cut(s) 57, 680, 690
BtgI CCRYGG 2 cut(s) 47, 675
BtsCI GGATG 4 cut(s) 82, 138, 537, 604
BtsIMutI CAGTG 2 cut(s) 387, 675
Cac8I GCNNGC 2 cut(s) 547, 711
CfoI GCGC 2 cut(s) 533, 715
Cfr13I GGNCC 3 cut(s) 44, 341, 689
Csp6I GTAC 2 cut(s) 6, 511
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 7 cut(s) 48, 70, 119, 188, 260, 413, 758
CviQI GTAC 2 cut(s) 6, 511
DdeI CTNAG 1 cut(s) 298
DpnI GATC 5 cut(s) 307, 334, 474, 603, 723
DpnII GATC 5 cut(s) 305, 332, 472, 601, 721
EaeI YGGCCR 1 cut(s) 678
EagI CGGCCG 1 cut(s) 678
EclXI CGGCCG 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 44, 341
Eco47III AGCGCT 1 cut(s) 714
Eco52I CGGCCG 1 cut(s) 678
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 750
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 7 cut(s) 51, 73, 122, 191, 263, 416, 761
FaqI GGGAC 1 cut(s) 304
FatI CATG 7 cut(s) 47, 69, 118, 187, 259, 412, 757
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 4 cut(s) 89, 125, 524, 611
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 1 cut(s) 710
GlaI GCGC 2 cut(s) 532, 714
GluI GCNGC 1 cut(s) 624
HaeII RGCGCY 2 cut(s) 534, 716
HaeIII GGCC 3 cut(s) 57, 680, 690
HapII CCGG 1 cut(s) 20
HhaI GCGC 2 cut(s) 533, 715
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 7 cut(s) 51, 73, 122, 191, 263, 416, 761
Hin6I GCGC 2 cut(s) 531, 713
HinP1I GCGC 2 cut(s) 531, 713
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 2 cut(s) 134, 463
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 181, 305, 468
Hpy188III TCNNGA 4 cut(s) 142, 236, 319, 434
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 686, 689
HpyAV CCTTC 1 cut(s) 773
HpyCH4III ACNGT 5 cut(s) 97, 295, 510, 515, 569
HpyCH4IV ACGT 2 cut(s) 489, 684
HpyCH4V TGCA 2 cut(s) 440, 623
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 446, 640, 649
HpyF3I CTNAG 1 cut(s) 298
HpySE526I ACGT 2 cut(s) 489, 684
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 7 cut(s) 51, 73, 122, 191, 263, 416, 761
HspAI GCGC 2 cut(s) 531, 713
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 5 cut(s) 305, 332, 472, 601, 721
LmnI GCTCC 1 cut(s) 446
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 710
MaeII ACGT 2 cut(s) 489, 684
MaeIII GTNAC 2 cut(s) 382, 392
MalI GATC 5 cut(s) 307, 334, 474, 603, 723
MboI GATC 5 cut(s) 305, 332, 472, 601, 721
MboII GAAGA 3 cut(s) 37, 657, 716
MflI RGATCY 2 cut(s) 332, 721
MhlI GDGCHC 3 cut(s) 69, 170, 675
MluCI AATT 6 cut(s) 104, 242, 255, 351, 399, 661
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 7 cut(s) 7, 47, 194, 232, 411, 464, 589
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 752
MvaI CCWGG 1 cut(s) 752
MwoI GCNNNNNNNGC 4 cut(s) 165, 446, 640, 649
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 305, 332, 472, 601, 721
NheI GCTAGC 1 cut(s) 709
NlaIII CATG 7 cut(s) 51, 73, 122, 191, 263, 416, 761
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 1 cut(s) 761
PciI ACATGT 1 cut(s) 757
PfeI GAWTC 1 cut(s) 463
PfoI TCCNGGA 1 cut(s) 750
PkrI GCNGC 1 cut(s) 625
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PscI ACATGT 1 cut(s) 757
Psp6I CCWGG 1 cut(s) 750
PspGI CCWGG 1 cut(s) 750
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 3 cut(s) 44, 341, 689
PstI CTGCAG 1 cut(s) 625
PsuI RGATCY 2 cut(s) 332, 721
PvuI CGATCG 1 cut(s) 308
RsaI GTAC 2 cut(s) 7, 512
RsaNI GTAC 2 cut(s) 6, 511
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 5 cut(s) 305, 332, 472, 601, 721
Sau96I GGNCC 3 cut(s) 44, 341, 689
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 752
SduI GDGCHC 3 cut(s) 69, 170, 675
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 2 cut(s) 44, 341
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 6 cut(s) 104, 242, 255, 351, 399, 661
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 1 cut(s) 750
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 5 cut(s) 97, 295, 510, 515, 569
TaiI ACGT 2 cut(s) 492, 687
TasI AATT 6 cut(s) 104, 242, 255, 351, 399, 661
TatI WGTACW 2 cut(s) 5, 510
TfiI GAWTC 1 cut(s) 463
TscAI CASTG 2 cut(s) 387, 675
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 4 cut(s) 248, 401, 755, 762
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 2 cut(s) 387, 675
VpaK11BI GGWCC 2 cut(s) 44, 341
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 761
XspI CTAG 1 cut(s) 710
ZraI GACGTC 1 cut(s) 685
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.