pycom10g18980

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0003267
Physical Location & Seq
Forward (+)
22195355 .. 22196686
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18980.1

Sequence Viewer

Length: 1332 bp
ATGCAATCCCTCGTCATCTCTCTCTCGAACCATCTTATAAAACCCAAAAGCAAATACCACGCCTCCTTCTCTTGCTTTCTCAAAACCTACAATTCATGGGCTTCCGCTATCCGAAATGCTTCTTCCCCCCACAATGCTCTGCACATCTACTCTCAAATGCACCGAAATTCGATTCCTTTCGATACCTTCTCCGTCCTCTTTACGCTAAAATCGTGTACCCAGTTGAAGAACCACGCAATCATTCAACACCTCCATGCCCATGTAATCAAACTTGGGTTTTGCACCCATGTATATGTGGCCACTTCGCTTCTCCATGCGTACGTTGTTGTGTCGTTTGTGGATGCATGCCTACTGTTCGATGAAATTCCTGAGAAGAACACGGTCACGTGGAACACGATGATTGCGGGGTTTTCGAGGTCGGGGGATGTGGAAAGAGCGCGTTTGGTTTTTGAGGAAATGCCGTTGAGAGATGTTGCGTCGTGGTCCGCCATGATAGCTGCGTACGTGAACAATGGCAAGCACGAGCGTGGTTTATCGTTGTTTCGGGATATGGTGATGGATGAATGTTTGAAGCCTGACCAAGTGAGTGTGGGCTCAGTTTTATCGGGTTGTGCCCACTTGGGTTCTCTTGGTTTGTTGGTGGGGAAATCAGTTCATGGGTTGATGGCTAAGAACGGGTGGGAATTGAATGTGGAAATTGGTACGATATTGGTTGACATGTATGCTAAGTGTGGGTTTTTGAAGGGAGCTGCACAGGTTTTTGAATTGATGCAAGAAAGGAATGTCATGACTTGGACCGCTTTGATTTGTGGATCGGCACAACATGGCTACAGCAAAGCAGCATTGCCTTTGTTTGAGATGATGCAAAAAGCCAGTGTAAGAGCTAATGAACTGACCTTTACTGGAGTTCTGAGTGCTTGTGTGCATACAGGACTAGTTGAGGAGGGCCGGAAATATTTCAAGATGATCGAAGAAAGTGGCCTGGAGCCTAGAATACAGCATTACGGATGCATGGTTGATTTGTACGGCAAGGCAGGACTGTTAGAGGAAGCTTATGAGGTTATTATGAAAATGAGTCTAGAGCCCAATGTCGTTATTTGGACTGCTTTTTTATCTGCTTGTAAGGAGCATAAACAGTTTGAGATGGCAGAACGAGTGGTTGAGCAGGTCATGAAGATGGTAAAACCAGAGAACGATGGTGGGGTTTATTCTCTCCTCTCGAATTTGTATGCTTTGGGTGGGAAGTGGGATGATGCAGAAAGAGTGAGGAATTTGATGAACAACCAACATGTGAGGAAGGTCGGAGCATCTAGTTTTGTTAGAAGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

444

Amino Acids

49.42

Weight (kDa)

7.97

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 125 - 156 4.2e-07 PPR repeat family
PPR_1 PF12854 126 - 153 4.4e-07 PPR repeat
PPR PF01535 128 - 156 8.9e-08 PPR repeat
PPR_2 PF13041 156 - 206 1.6e-07 PPR repeat family
PPR PF01535 160 - 188 7.2e-06 PPR repeat
PPR_2 PF13041 260 - 308 1.1e-08 PPR repeat family
PPR_long PF17177 270 - 359 4.4e-06 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 377 - 438 4.4e-09 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 1156
AccII CGCG 1 cut(s) 439
AciI CCGC 4 cut(s) 105, 404, 486, 798
AclWI GGATC 1 cut(s) 820
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 4 cut(s) 166, 363, 1222, 1270
AcvI CACGTG 1 cut(s) 387
AfaI GTAC 5 cut(s) 217, 320, 503, 703, 1025
AflIII ACRYGT 2 cut(s) 717, 1288
AgsI TTSAA 7 cut(s) 226, 245, 571, 688, 742, 764, 961
AhlI ACTAGT 1 cut(s) 934
AjnI CCWGG 1 cut(s) 981
AleI CACNNNNGTG 1 cut(s) 525
AluBI AGCT 4 cut(s) 497, 749, 884, 1052
AluI AGCT 4 cut(s) 497, 749, 884, 1052
AlwI GGATC 1 cut(s) 820
AoxI GGCC 3 cut(s) 297, 946, 979
ApeKI GCWGC 3 cut(s) 497, 749, 839
ApoI RAATTY 4 cut(s) 166, 363, 1222, 1270
Asp700I GAANNNNTTC 2 cut(s) 118, 956
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 3 cut(s) 483, 795, 946
AsuHPI GGTGA 1 cut(s) 565
AvaII GGWCC 2 cut(s) 483, 795
BaeGI GKGCMC 1 cut(s) 616
BalI TGGCCA 1 cut(s) 299
BanII GRGCYC 2 cut(s) 596, 1086
BauI CACGAG 1 cut(s) 521
BbrPI CACGTG 1 cut(s) 387
BbvI GCAGC 3 cut(s) 484, 736, 851
BccI CCATC 6 cut(s) 39, 550, 658, 1138, 1171, 1190
BceAI ACGGC 2 cut(s) 445, 1042
BciT130I CCWGG 1 cut(s) 983
BcuI ACTAGT 1 cut(s) 934
BfaI CTAG 4 cut(s) 935, 990, 1079, 1311
BfmI CTRYAG 1 cut(s) 829
BfuAI ACCTGC 1 cut(s) 1156
BisI GCNGC 3 cut(s) 498, 750, 840
BlsI GCNGC 3 cut(s) 499, 751, 841
Bme1390I CCNGG 1 cut(s) 983
Bme18I GGWCC 2 cut(s) 483, 795
BmgT120I GGNCC 3 cut(s) 483, 795, 946
BmiI GGNNCC 1 cut(s) 987
BmrFI CCNGG 1 cut(s) 983
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 6 cut(s) 331, 759, 852, 998, 1243, 1316
BmuI ACTGGG 1 cut(s) 214
BpmI CTGGAG 2 cut(s) 924, 1004
BsaAI YACGTR 2 cut(s) 387, 505
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bse1I ACTGG 3 cut(s) 220, 873, 907
Bse3DI GCAATG 1 cut(s) 842
BseBI CCWGG 1 cut(s) 983
BseGI GGATG 5 cut(s) 346, 430, 565, 1013, 1255
BseMI GCAATG 1 cut(s) 842
BseMII CTCAG 3 cut(s) 360, 609, 902
BseNI ACTGG 3 cut(s) 220, 873, 907
BseRI GAGGAG 2 cut(s) 956, 1205
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 3 cut(s) 484, 736, 851
BsgI GTGCAG 2 cut(s) 125, 735
Bsh1236I CGCG 1 cut(s) 439
BshFI GGCC 3 cut(s) 299, 948, 981
BsiSI CCGG 1 cut(s) 949
BsiWI CGTACG 2 cut(s) 318, 501
BsnI GGCC 3 cut(s) 299, 948, 981
Bsp1286I GDGCHC 3 cut(s) 596, 616, 1086
Bsp143I GATC 2 cut(s) 812, 966
BspACI CCGC 4 cut(s) 105, 404, 486, 798
BspANI GGCC 3 cut(s) 299, 948, 981
BspCNI CTCAG 3 cut(s) 361, 608, 903
BspFNI CGCG 1 cut(s) 439
BspHI TCATGA 2 cut(s) 786, 1170
BspLI GGNNCC 1 cut(s) 987
BspMI ACCTGC 1 cut(s) 1156
BspPI GGATC 1 cut(s) 820
BsrDI GCAATG 1 cut(s) 842
BsrI ACTGG 3 cut(s) 220, 873, 907
BssMI GATC 2 cut(s) 812, 966
BssSI CACGAG 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 521
Bst2UI CCWGG 1 cut(s) 983
Bst4CI ACNGT 4 cut(s) 354, 382, 1041, 1137
BstBAI YACGTR 2 cut(s) 387, 505
BstC8I GCNNGC 2 cut(s) 346, 518
BstDEI CTNAG 5 cut(s) 369, 595, 669, 726, 911
BstF5I GGATG 5 cut(s) 346, 430, 565, 1013, 1255
BstFNI CGCG 1 cut(s) 439
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 2 cut(s) 815, 969
BstMBI GATC 2 cut(s) 812, 966
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 983
BstNSI RCATGY 3 cut(s) 348, 721, 1292
BstSCI CCNGG 1 cut(s) 981
BstSFI CTRYAG 1 cut(s) 829
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 1 cut(s) 439
BstV1I GCAGC 3 cut(s) 484, 736, 851
BsuRI GGCC 3 cut(s) 299, 948, 981
BtsCI GGATG 5 cut(s) 346, 430, 565, 1013, 1255
BtsIMutI CAGTG 1 cut(s) 880
BveI ACCTGC 1 cut(s) 1156
Cac8I GCNNGC 2 cut(s) 346, 518
CciI TCATGA 2 cut(s) 786, 1170
CfoI GCGC 1 cut(s) 439
Cfr13I GGNCC 3 cut(s) 483, 795, 946
CseI GACGC 1 cut(s) 465
Csp6I GTAC 5 cut(s) 216, 319, 502, 702, 1024
CviQI GTAC 5 cut(s) 216, 319, 502, 702, 1024
DdeI CTNAG 5 cut(s) 369, 595, 669, 726, 911
DpnI GATC 2 cut(s) 814, 968
DpnII GATC 2 cut(s) 812, 966
EaeI YGGCCR 1 cut(s) 297
EciI GGCGGA 1 cut(s) 475
Eco24I GRGCYC 2 cut(s) 596, 1086
Eco47I GGWCC 2 cut(s) 483, 795
Eco72I CACGTG 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 981
EcoT22I ATGCAT 2 cut(s) 346, 1013
EcoT38I GRGCYC 2 cut(s) 596, 1086
FauI CCCGC 1 cut(s) 397
Fnu4HI GCNGC 3 cut(s) 498, 750, 840
FokI GGATG 5 cut(s) 353, 437, 572, 1020, 1262
FriOI GRGCYC 2 cut(s) 596, 1086
Fsp4HI GCNGC 3 cut(s) 498, 750, 840
FspBI CTAG 4 cut(s) 935, 990, 1079, 1311
GlaI GCGC 1 cut(s) 438
GluI GCNGC 3 cut(s) 498, 750, 840
GsuI CTGGAG 2 cut(s) 924, 1004
HaeIII GGCC 3 cut(s) 299, 948, 981
HapII CCGG 1 cut(s) 949
HgaI GACGC 1 cut(s) 465
HhaI GCGC 1 cut(s) 439
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 1050
HinfI GANTC 2 cut(s) 172, 1075
HpaII CCGG 1 cut(s) 949
HphI GGTGA 1 cut(s) 565
Hpy166II GTNNAC 3 cut(s) 216, 508, 715
Hpy188I TCNGA 3 cut(s) 113, 912, 1304
Hpy188III TCNNGA 8 cut(s) 25, 368, 545, 787, 961, 1079, 1171, 1219
Hpy8I GTNNAC 3 cut(s) 216, 508, 715
Hpy99I CGWCG 1 cut(s) 481
HpyAV CCTTC 4 cut(s) 76, 196, 736, 1291
HpyCH4III ACNGT 4 cut(s) 354, 382, 1041, 1137
HpyCH4IV ACGT 3 cut(s) 321, 386, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 5 cut(s) 369, 595, 669, 726, 911
HpySE526I ACGT 3 cut(s) 321, 386, 504
HspAI GCGC 1 cut(s) 437
Kzo9I GATC 2 cut(s) 812, 966
LmnI GCTCC 4 cut(s) 746, 985, 1126, 1304
Lsp1109I GCAGC 3 cut(s) 484, 736, 851
LweI GCATC 6 cut(s) 331, 759, 852, 998, 1243, 1316
MaeI CTAG 4 cut(s) 935, 990, 1079, 1311
MaeII ACGT 3 cut(s) 321, 386, 504
MaeIII GTNAC 1 cut(s) 382
MalI GATC 2 cut(s) 814, 968
MboI GATC 2 cut(s) 812, 966
MboII GAAGA 5 cut(s) 114, 238, 385, 983, 1186
MhlI GDGCHC 3 cut(s) 596, 616, 1086
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 8 cut(s) 91, 166, 363, 683, 696, 764, 1222, 1270
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 1 cut(s) 1084
MmeI TCCRAC 1 cut(s) 1282
Mox20I TGGCCA 1 cut(s) 299
Mph1103I ATGCAT 2 cut(s) 346, 1013
MroXI GAANNNNTTC 2 cut(s) 118, 956
MscI TGGCCA 1 cut(s) 299
MslI CAYNNNNRTG 5 cut(s) 252, 258, 291, 525, 1175
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 1 cut(s) 949
MspR9I CCNGG 1 cut(s) 983
MvaI CCWGG 1 cut(s) 983
MvnI CGCG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeII GATC 2 cut(s) 812, 966
NlaIV GGNNCC 1 cut(s) 987
NmuCI GTSAC 1 cut(s) 382
NsiI ATGCAT 2 cut(s) 346, 1013
NspI RCATGY 3 cut(s) 348, 721, 1292
OliI CACNNNNGTG 1 cut(s) 525
PaeI GCATGC 1 cut(s) 348
PagI TCATGA 2 cut(s) 786, 1170
PciI ACATGT 2 cut(s) 717, 1288
PcsI WCGNNNNNNNCGW 2 cut(s) 209, 392
PdmI GAANNNNTTC 2 cut(s) 118, 956
PfeI GAWTC 1 cut(s) 172
Pfl23II CGTACG 2 cut(s) 318, 501
PkrI GCNGC 3 cut(s) 499, 751, 841
PleI GAGTC 1 cut(s) 1083
PmaCI CACGTG 1 cut(s) 387
PmlI CACGTG 1 cut(s) 387
PpsI GAGTC 1 cut(s) 1083
Ppu21I YACGTR 2 cut(s) 387, 505
PscI ACATGT 2 cut(s) 717, 1288
PsiI TTATAA 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 981
PspCI CACGTG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 981
PspLI CGTACG 2 cut(s) 318, 501
PspN4I GGNNCC 1 cut(s) 987
PspPI GGNCC 3 cut(s) 483, 795, 946
RsaI GTAC 5 cut(s) 217, 320, 503, 703, 1025
RsaNI GTAC 5 cut(s) 216, 319, 502, 702, 1024
RseI CAYNNNNRTG 5 cut(s) 252, 258, 291, 525, 1175
SatI GCNGC 3 cut(s) 498, 750, 840
Sau3AI GATC 2 cut(s) 812, 966
Sau96I GGNCC 3 cut(s) 483, 795, 946
SchI GAGTC 1 cut(s) 1084
ScrFI CCNGG 1 cut(s) 983
SduI GDGCHC 3 cut(s) 596, 616, 1086
SfaNI GCATC 6 cut(s) 331, 759, 852, 998, 1243, 1316
SfcI CTRYAG 1 cut(s) 829
SinI GGWCC 2 cut(s) 483, 795
SmiMI CAYNNNNRTG 5 cut(s) 252, 258, 291, 525, 1175
SpeI ACTAGT 1 cut(s) 934
SphI GCATGC 1 cut(s) 348
Sse9I AATT 8 cut(s) 91, 166, 363, 683, 696, 764, 1222, 1270
SsiI CCGC 4 cut(s) 105, 404, 486, 798
SspI AATATT 1 cut(s) 956
SspMI CTAG 4 cut(s) 935, 990, 1079, 1311
StyD4I CCNGG 1 cut(s) 981
TaaI ACNGT 4 cut(s) 354, 382, 1041, 1137
TaiI ACGT 3 cut(s) 324, 389, 507
TaqI TCGA 7 cut(s) 26, 170, 180, 357, 413, 969, 1220
TasI AATT 8 cut(s) 91, 166, 363, 683, 696, 764, 1222, 1270
TfiI GAWTC 1 cut(s) 172
TscAI CASTG 1 cut(s) 880
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 3 cut(s) 497, 749, 839
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 8 cut(s) 84, 375, 576, 644, 903, 1082, 1187, 1292
TspGWI ACGGA 2 cut(s) 181, 1020
TspRI CASTG 1 cut(s) 880
VpaK11BI GGWCC 2 cut(s) 483, 795
XapI RAATTY 4 cut(s) 166, 363, 1222, 1270
XbaI TCTAGA 1 cut(s) 1078
XceI RCATGY 3 cut(s) 348, 721, 1292
XmnI GAANNNNTTC 2 cut(s) 118, 956
XspI CTAG 4 cut(s) 935, 990, 1079, 1311
Zsp2I ATGCAT 2 cut(s) 346, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.