Rw7G027710

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003267
Physical Location & Seq
Reverse (-)
36364613 .. 36366007
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027710.1

Sequence Viewer

Length: 1395 bp
ATGAGTCGAATTCAATCCATCGCCAAACTCTCAAACCATCTTATCAAACCCACAAACCACGCCTTCTGTTGGTGCCTCAAAAGCTACAACTCATGGGCTGCAGCCATACGCAGCTCTTCTTCCCCACATAAAGCTCTGCATATCTATTCTCAAATGCACCGGCAGTGTGTACCTTTCGACAGCTTCTCCATTCTCTTTACTCTAAAATCATGTACCCAATTGCATAACCACGCAACCATTCAACACCTCCATTCCCATATCGTTAAACTCGGGTTTGACTCTCACGTATACGTGGCCACTGCCCTTCTGCATGCTTACGTTGTCGTCTCGTTTGTGGATGCATGTAAACTGTTCGACGAAATGCCTGAGAAGAGCACGGTCACCTGGAACACAATGATTTCTGGGTATTCGAGGACTGGGAATGTAGAGAGAGCAACACTGGTGTTTGAGGAAATGCCAGTGAGAGATGTTTCATCATGGTGTGCAATGATCGCAGCCTATGTGAACAATGGCAAACATGAGCTTGGGTTATCACTGTTTCGGGATATGGTAATGGCTGAGGAAGGTGTGAAACCTGACCAAGTGACTGCAGTAGTGGTTTTATATGGCTGTGCTCACTTGGGCTCTGTTGGGTTGTTGTTGGGGAAGTCAGTTCACGGGTTTATGGTCAAGAATCGGTGGGAGATGAATGCAGAGCTCGGTACAGTTTTGATCAGCATGTATGCGAAATGTGGGTTTTTAAAGGGAGCAGAACAGGTTTTTGAGTTGATGCAAGAGAAGAATGTGATGGCTTGGACTGCATTGATTTGTGGATCAGCACAACATGGCTACAGCAAAGAAGCATTGTGTTTGTTTGAGACAATGCATAAAGCCGGTGTAAGACCTAATGAACTGACTTTTACAGGAGTTCTTAGTGCTTGTGTGAACACGGGACTAGTTGATGAGGGTCGAAAATATTTCAATCTGATTGAAGAAAGTGGCTTGGAGCTTAGGATTCAGCATTATGGATGCATGGTCGATTTGTATGGCAAGGTGGGGCTGTTAGAGGAAGCGTATGATTTTATTAAGAACATGAAACTTGAACCCAATATTGCTGTCTGGGGAGCTTTTTTGTCGGCTTGTAAGGAGCATAAGCAGTTTGAGATGGCCGAAAGAGTAGTTGAGCAGGTCATGAAGATGGTGAAACCAGAAAATGATAGTGGGGTTTACTCTCTTATTGCCGATTTGTATGTTTTGGGTGGGAAGTGGGATGATGCTGAAAGAGTGAGGAGTCTGATGGTGAACCACAAGGTGAGGAAGATCAGGGGCTCTAGTTTTATTCAAGTGCATGGTAGAGAAAACCAATTTTATATGCCGCTCCCAACTTATAAAGCTTACCTGAATGATTTATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

464

Amino Acids

52.25

Weight (kDa)

7.61

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 125 - 157 1.9e-07 PPR repeat family
PPR_1 PF12854 126 - 152 5.9e-07 PPR repeat
PPR PF01535 127 - 155 1.7e-08 PPR repeat
PPR_2 PF13041 156 - 206 1e-07 PPR repeat family
PPR_2 PF13041 260 - 309 7e-11 PPR repeat family
PPR_3 PF13812 261 - 309 3e-06 Pentatricopeptide repeat domain
E_motif PF20431 377 - 441 3.8e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1368
Acc36I ACCTGC 1 cut(s) 1156
AccB1I GGYRCC 1 cut(s) 72
AccBSI CCGCTC 1 cut(s) 1357
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 1355
AclWI GGATC 1 cut(s) 820
AcoI YGGCCR 2 cut(s) 294, 1146
AcsI RAATTY 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 1291
AfaI GTAC 3 cut(s) 171, 214, 703
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 6 cut(s) 14, 242, 961, 971, 1082, 1322
AhlI ACTAGT 1 cut(s) 934
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 9 cut(s) 84, 114, 134, 183, 523, 697, 988, 1106, 1373
AluI AGCT 9 cut(s) 84, 114, 134, 183, 523, 697, 988, 1106, 1373
Alw21I GWGCWC 3 cut(s) 377, 616, 699
Alw26I GTCTC 2 cut(s) 331, 851
AlwI GGATC 1 cut(s) 820
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 294, 1146
ApeKI GCWGC 4 cut(s) 98, 101, 111, 494
ApoI RAATTY 1 cut(s) 9
AsuHPI GGTGA 4 cut(s) 373, 1192, 1291, 1303
AvaI CYCGRG 1 cut(s) 269
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 3 cut(s) 626, 699, 1310
Bbv12I GWGCWC 3 cut(s) 377, 616, 699
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 4 cut(s) 85, 113, 123, 506
BccI CCATC 6 cut(s) 26, 45, 781, 1138, 1171, 1270
BciT130I CCWGG 1 cut(s) 385
BclI TGATCA 1 cut(s) 711
BcoDI GTCTC 2 cut(s) 331, 851
BcuI ACTAGT 1 cut(s) 934
BfaI CTAG 3 cut(s) 935, 1311, 1393
BfmI CTRYAG 3 cut(s) 99, 588, 829
BfuAI ACCTGC 1 cut(s) 1156
BisI GCNGC 5 cut(s) 99, 102, 112, 495, 1355
BlsI GCNGC 5 cut(s) 100, 103, 113, 496, 1356
Bme1390I CCNGG 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 385
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 4 cut(s) 328, 759, 998, 1243
BmuI ACTGGG 1 cut(s) 426
Bpu10I CCTNAGC 2 cut(s) 558, 989
BsaAI YACGTR 2 cut(s) 286, 292
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 2 cut(s) 159, 872
Bse1I ACTGG 3 cut(s) 421, 444, 458
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 1 cut(s) 385
BseGI GGATG 3 cut(s) 343, 1013, 1255
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 2 cut(s) 357, 549
BseNI ACTGG 3 cut(s) 421, 444, 458
BseRI GAGGAG 1 cut(s) 1282
BseXI GCAGC 4 cut(s) 85, 113, 123, 506
BshFI GGCC 2 cut(s) 296, 1148
BshNI GGYRCC 1 cut(s) 72
BsiHKAI GWGCWC 3 cut(s) 377, 616, 699
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 2 cut(s) 160, 873
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 331, 851
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 945
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 2 cut(s) 296, 1148
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 5 cut(s) 377, 616, 626, 699, 1310
Bsp143I GATC 4 cut(s) 489, 711, 812, 1299
BspACI CCGC 1 cut(s) 1355
BspANI GGCC 2 cut(s) 296, 1148
BspCNI CTCAG 2 cut(s) 358, 550
BspHI TCATGA 1 cut(s) 1170
BspLI GGNNCC 1 cut(s) 74
BspMAI CTGCAG 2 cut(s) 103, 592
BspMI ACCTGC 1 cut(s) 1156
BspPI GGATC 1 cut(s) 820
BspQI GCTCTTC 2 cut(s) 121, 365
BspT107I GGYRCC 1 cut(s) 72
BsrBI CCGCTC 1 cut(s) 1357
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 2 cut(s) 159, 872
BsrI ACTGG 3 cut(s) 421, 444, 458
BssAI RCCGGY 2 cut(s) 159, 872
BssMI GATC 4 cut(s) 489, 711, 812, 1299
BssNAI GTATAC 1 cut(s) 289
Bst1107I GTATAC 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 4 cut(s) 351, 379, 537, 706
Bst6I CTCTTC 2 cut(s) 121, 365
BstBAI YACGTR 2 cut(s) 286, 292
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 4 cut(s) 366, 558, 911, 989
BstEII GGTNACC 1 cut(s) 379
BstF5I GGATG 3 cut(s) 343, 1013, 1255
BstKTI GATC 4 cut(s) 492, 714, 815, 1302
BstMAI GTCTC 2 cut(s) 331, 851
BstMBI GATC 4 cut(s) 489, 711, 812, 1299
BstMWI GCNNNNNNNGC 3 cut(s) 81, 491, 797
BstNI CCWGG 1 cut(s) 385
BstNSI RCATGY 3 cut(s) 314, 345, 721
BstPI GGTNACC 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 383
BstSFI CTRYAG 3 cut(s) 99, 588, 829
BstV1I GCAGC 4 cut(s) 85, 113, 123, 506
BstZ17I GTATAC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 296, 1148
BtgZI GCGATG 1 cut(s) 4
BtsCI GGATG 3 cut(s) 343, 1013, 1255
BtsI GCAGTG 2 cut(s) 170, 297
BtsIMutI CAGTG 5 cut(s) 170, 297, 437, 465, 533
BveI ACCTGC 1 cut(s) 1156
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 1170
Cfr10I RCCGGY 2 cut(s) 159, 872
Csp6I GTAC 3 cut(s) 170, 213, 702
CviQI GTAC 3 cut(s) 170, 213, 702
DdeI CTNAG 4 cut(s) 366, 558, 911, 989
DpnI GATC 4 cut(s) 491, 713, 814, 1301
DpnII GATC 4 cut(s) 489, 711, 812, 1299
DraI TTTAAA 1 cut(s) 741
DraIII CACNNNGTG 1 cut(s) 1291
EaeI YGGCCR 2 cut(s) 294, 1146
Eam1104I CTCTTC 2 cut(s) 121, 365
EarI CTCTTC 2 cut(s) 121, 365
Ecl136II GAGCTC 1 cut(s) 697
Eco24I GRGCYC 3 cut(s) 626, 699, 1310
Eco53kI GAGCTC 1 cut(s) 697
Eco88I CYCGRG 1 cut(s) 269
Eco91I GGTNACC 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 697
EcoO65I GGTNACC 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 383
EcoT22I ATGCAT 3 cut(s) 343, 867, 1013
EcoT38I GRGCYC 3 cut(s) 626, 699, 1310
Esp3I CGTCTC 1 cut(s) 331
FaqI GGGAC 1 cut(s) 945
FbaI TGATCA 1 cut(s) 711
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 99, 102, 112, 495, 1355
FokI GGATG 3 cut(s) 350, 1020, 1262
FriOI GRGCYC 3 cut(s) 626, 699, 1310
Fsp4HI GCNGC 5 cut(s) 99, 102, 112, 495, 1355
FspBI CTAG 3 cut(s) 935, 1311, 1393
GluI GCNGC 5 cut(s) 99, 102, 112, 495, 1355
HaeIII GGCC 2 cut(s) 296, 1148
HapII CCGG 2 cut(s) 160, 873
HindIII AAGCTT 1 cut(s) 1371
HinfI GANTC 5 cut(s) 4, 278, 673, 994, 1270
HpaII CCGG 2 cut(s) 160, 873
HphI GGTGA 4 cut(s) 373, 1192, 1291, 1303
Hpy166II GTNNAC 8 cut(s) 170, 289, 347, 505, 655, 925, 1207, 1282
Hpy188I TCNGA 2 cut(s) 966, 1275
Hpy188III TCNNGA 3 cut(s) 542, 670, 1171
Hpy8I GTNNAC 8 cut(s) 170, 289, 347, 505, 655, 925, 1207, 1282
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 3 cut(s) 73, 314, 557
HpyCH4III ACNGT 4 cut(s) 351, 379, 537, 706
HpyCH4IV ACGT 3 cut(s) 285, 291, 318
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 491, 797
HpyF3I CTNAG 4 cut(s) 366, 558, 911, 989
HpySE526I ACGT 3 cut(s) 285, 291, 318
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 4 cut(s) 489, 711, 812, 1299
LguI GCTCTTC 2 cut(s) 121, 365
LmnI GCTCC 5 cut(s) 746, 985, 1103, 1126, 1362
Lsp1109I GCAGC 4 cut(s) 85, 113, 123, 506
LweI GCATC 4 cut(s) 328, 759, 998, 1243
MaeI CTAG 3 cut(s) 935, 1311, 1393
MaeII ACGT 3 cut(s) 285, 291, 318
MaeIII GTNAC 2 cut(s) 379, 583
MalI GATC 4 cut(s) 491, 713, 814, 1301
MbiI CCGCTC 1 cut(s) 1357
MboI GATC 4 cut(s) 489, 711, 812, 1299
MboII GAAGA 7 cut(s) 108, 111, 382, 790, 983, 1186, 1309
MfeI CAATTG 1 cut(s) 218
MhlI GDGCHC 5 cut(s) 377, 616, 626, 699, 1310
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 3 cut(s) 9, 218, 1343
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 3 cut(s) 13, 272, 1279
MnlI CCTC 9 cut(s) 86, 257, 405, 442, 553, 937, 1039, 1260, 1287
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 3 cut(s) 343, 867, 1013
MscI TGGCCA 1 cut(s) 296
MseI TTAA 3 cut(s) 264, 740, 1065
MslI CAYNNNNRTG 2 cut(s) 478, 1175
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 2 cut(s) 160, 873
MspR9I CCNGG 1 cut(s) 385
MunI CAATTG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 1 cut(s) 385
MwoI GCNNNNNNNGC 3 cut(s) 81, 491, 797
NdeII GATC 4 cut(s) 489, 711, 812, 1299
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 2 cut(s) 379, 583
NsiI ATGCAT 3 cut(s) 343, 867, 1013
NspI RCATGY 3 cut(s) 314, 345, 721
PaeI GCATGC 1 cut(s) 314
PagI TCATGA 1 cut(s) 1170
PciSI GCTCTTC 2 cut(s) 121, 365
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 2 cut(s) 673, 994
PkrI GCNGC 5 cut(s) 100, 103, 113, 496, 1356
PleI GAGTC 3 cut(s) 12, 272, 1278
PpsI GAGTC 3 cut(s) 12, 272, 1278
Ppu21I YACGTR 2 cut(s) 286, 292
PsiI TTATAA 1 cut(s) 1368
Psp124BI GAGCTC 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 383
PspEI GGTNACC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 74
PstI CTGCAG 2 cut(s) 103, 592
RsaI GTAC 3 cut(s) 171, 214, 703
RsaNI GTAC 3 cut(s) 170, 213, 702
RseI CAYNNNNRTG 2 cut(s) 478, 1175
SacI GAGCTC 1 cut(s) 699
SapI GCTCTTC 2 cut(s) 121, 365
SaqAI TTAA 3 cut(s) 264, 740, 1065
SatI GCNGC 5 cut(s) 99, 102, 112, 495, 1355
Sau3AI GATC 4 cut(s) 489, 711, 812, 1299
SchI GAGTC 3 cut(s) 13, 272, 1279
ScrFI CCNGG 1 cut(s) 385
SduI GDGCHC 5 cut(s) 377, 616, 626, 699, 1310
SfaNI GCATC 4 cut(s) 328, 759, 998, 1243
SfcI CTRYAG 3 cut(s) 99, 588, 829
SmiMI CAYNNNNRTG 2 cut(s) 478, 1175
SpeI ACTAGT 1 cut(s) 934
SphI GCATGC 1 cut(s) 314
Sse9I AATT 3 cut(s) 9, 218, 1343
SsiI CCGC 1 cut(s) 1355
SspI AATATT 2 cut(s) 956, 1090
SspMI CTAG 3 cut(s) 935, 1311, 1393
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 1 cut(s) 383
TaaI ACNGT 4 cut(s) 351, 379, 537, 706
TaiI ACGT 3 cut(s) 288, 294, 321
TaqI TCGA 6 cut(s) 7, 177, 354, 410, 949, 1017
TasI AATT 3 cut(s) 9, 218, 1343
TauI GCSGC 1 cut(s) 1357
TfiI GAWTC 2 cut(s) 673, 994
Tru1I TTAA 3 cut(s) 264, 740, 1065
Tru9I TTAA 3 cut(s) 264, 740, 1065
TscAI CASTG 5 cut(s) 170, 304, 444, 465, 540
TseFI GTSAC 2 cut(s) 379, 583
TseI GCWGC 4 cut(s) 98, 101, 111, 494
Tsp45I GTSAC 2 cut(s) 379, 583
TspDTI ATGAA 5 cut(s) 462, 701, 903, 1088, 1187
TspRI CASTG 5 cut(s) 170, 304, 444, 465, 540
XapI RAATTY 1 cut(s) 9
XceI RCATGY 3 cut(s) 314, 345, 721
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 3 cut(s) 935, 1311, 1393
Zsp2I ATGCAT 3 cut(s) 343, 867, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.