Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g13211 FvH4_3g13220 |
| malus_domestica | MD10G1225900.v1.1 |
| prunus_persica | Prupe.4G119500_v2.0.a1 Prupe.4G119600_v2.0.a1 |
| pyrus_communis | pycom10g18980 |
| rosa_chinensis | RchiOBHm_Chr5g0021561 RchiOBHm_Chr5g0021571 RchiOBHm_Chr7g0219451 |
| rosa_laevigata | RLG00000032615 |
| rosa_multiflora | Rmu_co8317561.1_g000001 Rmu_co8317561.1_g000002 Rmu_co8347725.1_g000001 Rmu_sc0002052.1_g000015 Rmu_sc0002052.1_g000016 Rmu_sc0002052.1_g000017 Rmu_sc0003767.1_g000012 Rmu_sc0023070.1_g000006 Rmu_sc0023070.1_g000007 Rmu_sc0023070.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00057070 Rroxscaffold_1G00057080 Rroxscaffold_1G00057090 |
| rosa_rugosa | Rorug05G0067400 Rorug05G0067400 Rorug07G0185200 |
| rosa_samantha | Rh5AG156800 Rh5BG156000 Rh5BG156100 Rh5BG156200 Rh5CG170300 Rh5CG170400 Rh5DG156600 Rh7AG328000 Rh7BG318000 Rh7CG345400 |
| rosa_wichuraiana | Rw7G027710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 13 |
| AccB1I | GGYRCC | 1 cut(s) | 175 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AdeI | CACNNNGTG | 1 cut(s) | 148 |
| AgsI | TTSAA | 1 cut(s) | 229 |
| AleI | CACNNNNGTG | 1 cut(s) | 181 |
| AluBI | AGCT | 1 cut(s) | 201 |
| AluI | AGCT | 1 cut(s) | 201 |
| AoxI | GGCC | 2 cut(s) | 3, 192 |
| ApeKI | GCWGC | 1 cut(s) | 187 |
| AsuHPI | GGTGA | 4 cut(s) | 49, 148, 160, 182 |
| BanI | GGYRCC | 1 cut(s) | 175 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 247, 279 |
| BbvI | GCAGC | 1 cut(s) | 199 |
| BccI | CCATC | 3 cut(s) | 28, 47, 161 |
| BfuAI | ACCTGC | 1 cut(s) | 13 |
| BisI | GCNGC | 1 cut(s) | 188 |
| BlsI | GCNGC | 1 cut(s) | 189 |
| BmiI | GGNNCC | 1 cut(s) | 177 |
| BmsI | GCATC | 1 cut(s) | 100 |
| BsaWI | WCCGGW | 1 cut(s) | 43 |
| Bse1I | ACTGG | 1 cut(s) | 195 |
| BseGI | GGATG | 1 cut(s) | 112 |
| BseMII | CTCAG | 1 cut(s) | 194 |
| BseNI | ACTGG | 1 cut(s) | 195 |
| BseRI | GAGGAG | 1 cut(s) | 139 |
| BseXI | GCAGC | 1 cut(s) | 199 |
| BshFI | GGCC | 2 cut(s) | 5, 194 |
| BshNI | GGYRCC | 1 cut(s) | 175 |
| BsiSI | CCGG | 1 cut(s) | 44 |
| BsnI | GGCC | 2 cut(s) | 5, 194 |
| Bsp143I | GATC | 1 cut(s) | 210 |
| BspANI | GGCC | 2 cut(s) | 5, 194 |
| BspCNI | CTCAG | 1 cut(s) | 193 |
| BspHI | TCATGA | 1 cut(s) | 27 |
| BspLI | GGNNCC | 1 cut(s) | 177 |
| BspMI | ACCTGC | 1 cut(s) | 13 |
| BspT107I | GGYRCC | 1 cut(s) | 175 |
| BsrI | ACTGG | 1 cut(s) | 195 |
| BssMI | GATC | 1 cut(s) | 210 |
| BstC8I | GCNNGC | 1 cut(s) | 192 |
| BstDEI | CTNAG | 2 cut(s) | 180, 298 |
| BstF5I | GGATG | 1 cut(s) | 112 |
| BstKTI | GATC | 1 cut(s) | 213 |
| BstMBI | GATC | 1 cut(s) | 210 |
| BstV1I | GCAGC | 1 cut(s) | 199 |
| BsuRI | GGCC | 2 cut(s) | 5, 194 |
| BtsCI | GGATG | 1 cut(s) | 112 |
| BtsIMutI | CAGTG | 1 cut(s) | 188 |
| BveI | ACCTGC | 1 cut(s) | 13 |
| Cac8I | GCNNGC | 1 cut(s) | 192 |
| CciI | TCATGA | 1 cut(s) | 27 |
| CviAII | CATG | 1 cut(s) | 28 |
| CviJI | RGCY | 5 cut(s) | 5, 194, 201, 234, 259 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 194, 201, 234, 259 |
| DdeI | CTNAG | 2 cut(s) | 180, 298 |
| DpnI | GATC | 1 cut(s) | 212 |
| DpnII | GATC | 1 cut(s) | 210 |
| DraIII | CACNNNGTG | 1 cut(s) | 148 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| FaeI | CATG | 1 cut(s) | 31 |
| FaiI | YATR | 3 cut(s) | 29, 85, 87 |
| FatI | CATG | 1 cut(s) | 27 |
| Fnu4HI | GCNGC | 1 cut(s) | 188 |
| FokI | GGATG | 1 cut(s) | 119 |
| Fsp4HI | GCNGC | 1 cut(s) | 188 |
| GluI | GCNGC | 1 cut(s) | 188 |
| HaeIII | GGCC | 2 cut(s) | 5, 194 |
| HapII | CCGG | 1 cut(s) | 44 |
| Hin1II | CATG | 1 cut(s) | 31 |
| HpaII | CCGG | 1 cut(s) | 44 |
| HphI | GGTGA | 4 cut(s) | 49, 148, 160, 182 |
| Hpy166II | GTNNAC | 3 cut(s) | 64, 139, 264 |
| Hpy188I | TCNGA | 2 cut(s) | 215, 287 |
| Hpy188III | TCNNGA | 2 cut(s) | 28, 208 |
| Hpy8I | GTNNAC | 3 cut(s) | 64, 139, 264 |
| HpyAV | CCTTC | 2 cut(s) | 148, 249 |
| HpyCH4V | TGCA | 1 cut(s) | 245 |
| HpyF3I | CTNAG | 2 cut(s) | 180, 298 |
| Hsp92II | CATG | 1 cut(s) | 31 |
| Kzo9I | GATC | 1 cut(s) | 210 |
| LpnPI | CCDG | 5 cut(s) | 8, 57, 176, 208, 256 |
| Lsp1109I | GCAGC | 1 cut(s) | 199 |
| LweI | GCATC | 1 cut(s) | 100 |
| MalI | GATC | 1 cut(s) | 212 |
| MboI | GATC | 1 cut(s) | 210 |
| MboII | GAAGA | 1 cut(s) | 43 |
| MfeI | CAATTG | 1 cut(s) | 246 |
| MluCI | AATT | 3 cut(s) | 238, 246, 288 |
| MnlI | CCTC | 4 cut(s) | 117, 144, 166, 189 |
| MseI | TTAA | 1 cut(s) | 131 |
| MslI | CAYNNNNRTG | 2 cut(s) | 32, 181 |
| MspI | CCGG | 1 cut(s) | 44 |
| MunI | CAATTG | 1 cut(s) | 246 |
| NdeII | GATC | 1 cut(s) | 210 |
| NlaIII | CATG | 1 cut(s) | 31 |
| NlaIV | GGNNCC | 1 cut(s) | 177 |
| OliI | CACNNNNGTG | 1 cut(s) | 181 |
| PagI | TCATGA | 1 cut(s) | 27 |
| PkrI | GCNGC | 1 cut(s) | 189 |
| PspN4I | GGNNCC | 1 cut(s) | 177 |
| RseI | CAYNNNNRTG | 2 cut(s) | 32, 181 |
| SaqAI | TTAA | 1 cut(s) | 131 |
| SatI | GCNGC | 1 cut(s) | 188 |
| Sau3AI | GATC | 1 cut(s) | 210 |
| SetI | ASST | 5 cut(s) | 27, 150, 181, 203, 299 |
| SfaNI | GCATC | 1 cut(s) | 100 |
| SgeI | CNNG | 8 cut(s) | 35, 40, 56, 157, 203, 207, 220, 283 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 32, 181 |
| Sse9I | AATT | 3 cut(s) | 238, 246, 288 |
| TaqI | TCGA | 1 cut(s) | 207 |
| TasI | AATT | 3 cut(s) | 238, 246, 288 |
| Tru1I | TTAA | 1 cut(s) | 131 |
| Tru9I | TTAA | 1 cut(s) | 131 |
| TscAI | CASTG | 1 cut(s) | 188 |
| TseI | GCWGC | 1 cut(s) | 187 |
| TspDTI | ATGAA | 1 cut(s) | 44 |
| TspRI | CASTG | 1 cut(s) | 188 |