RLG00000032615

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003267
Physical Location & Seq
Reverse (-)
16975373 .. 16978726
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032615

Sequence Viewer

Length: 3093 bp
ATGCAATGCAAATCCATTGTCAATCTCTCCACCTATCTCGTTAAACCCACAAACCCTTGGTCCCTCAGAAACCACCCTTCATGGGCTTCAGCTATCCGAAGCGCTTCTTCTCCACACCAAGTTTTACTTATTTACTGTCAGATGCACCGTGAATCAATTCCAATCGACACCTTCTCCATTAAAGGAGCGCTCAAATCATGCGCGAAACTAAAGAACCATGCCCACATTCAGCAACTCCATTCCCATATCATTAAACTCGGGTTTCGTTCAGATCCGTATGTTGCGTCTTTTCTTCTGAAGTCCTACTTCCTCGTCTCGTTTGCTGAACATGCCCACCAGCTGTTCGACGAAATGCCTATGAAGAACACGGCCGCGTGGAACACAATGCTTTCGGGGTATAAGAGTTTGGGGGATGTAGAGAAAGCACGCTCAGTGTTTGATCAAATGAAGCCGCGAGGTGTTGAGTCATGGAGTTGCATGATCGACGCGTATGTGAAGAATGGCGACAATGAGCATGGCGTAACGCTCTTTCGGAATATGGTGATTGAGGAAGGTATAAAGCCTGACATTGTAACTCTACTGCCGGTTTTATCAGTTTGCGCTGACATGGGTCCTTGTGGCTTGTTGCTTGGGAAGTCAGTTCATGGGTTTGTGGTGCGTCATGGGTTGAGGTTGAGCGATTTGGTTGGTTCAGCTTTGGTTACCATGTATGCTAAGTGCCGGTTTTTGGACGCAGCAGCCAGGCTGTTGGCATTTTTGCAAGAGAGAGATTTGAAGACTTGGAATATGCATTTTTGTCGAACGGTGCAAAAGGGCTACAAAAAAGGGCCGTTGTATGTATTCGAGAATTTGCAAAAAGCCAGTGTGAGACCTAATGAGCTAACTTTCAAGGAAGTTCTTAATGCTAGTGTGCATTCAGGACTAGTCAAGGAGGGGCGGGAATATTTCAAGTTGATTGAAGGATGTGGTTTGAAGCCTAGTATTCAACACTATCGATCCATGGTCCAACTATATAGTAATGCAGGGCAGGTAGAAGAAGCATATAAGGTGATTAAGAACATGAAACTTGAATCTGATGTTGTGGTCTGGAGTTCTTTACTGTCTGCTTGTGAGAAGCACAGACAGTTTGGGATGGCGGAAAGAGTAGCTAAGGAGATCATGAAGACAGTGAAGCCAAACAGCAAAAGTCGTGTTCAGCTTCATTCTCTGGTCCAACTATATAGTAATGCTTATAAGGTTATTAAGAACACGAAAGTTGAACCTGATGTTGAGGCCTGGAGTTATTTTCTGTCTGCTTGTAAGGAGCACAAACAGTTTGGGATGGCGGAAAAAGTAGCTAGGGAGGTCATGAAGACAGTGAAGCCAGACCACAAACATGGTGCTCTGCTTCATCCTCTGATCCAACTATATAGTAATGCAGGCCTGCTAGAGGAAGCTTATAAGGTTATTAAGGACATGAAACTTAAACCTTATGTTGCGTCCTGGATTTCTTTTCTCTCTGCTTGTAAGGAGCACAAACAGATTGGGATGGTTGAAAGAGTAGCTGAGACGGTCATGATGACAGTGAAGCCGCACAGCAAACATGGTGCTCCGCTTCATTCTCATATCTCAGATATGAGGGATTTGAGAAAGTCAATGGCCAATCCAAATTTAGGGAAGATACATGATTTGCTGCAAAAATTTGACGAAGGCCAGGGAGCTATTTGTTTTGATGCACGGGCACAAAAAAGAACATCTCCCAATATTCCAATGAAACTAAACCAAGCAATGCAATCCATAGCCAAACTCTCAAACCATCTTGTCAAACCCACAAACCATGCCTTCTGTTGGTCTCTCAAAAGCTACAACTCATGGGCTGCTGCCATACGCAGCTCTTCTTCCCCACATATAGCTCTGCATATCTATTCTCAAATGCACCGGCAGTCTGTACCTTTCGACAGCTTCTCCATTCTCTTTACTCTAAAATCATGTACCCAATTGCATAACTACGCAACCATTCAACACCTCCATTCCCATATCGTTAAACTCGGGTTTGATTCTCACGTATATGTGGCCACTTCACTTCTCCATGGTTACGTTGTCGTCTCGTTTGTGGATGCGTGTAAACTGTTCGACGAAATGCCTGAGAAGAGCAGTGTCACCTGGAACACAATGATTTCCGGGTATTCGAGGACCGGGAATGTAGAGAGAGCAAGACTGGTGTTTGAGGAAATGCCAGTGAGAGATGTTTCATCATGGTGTGCAATGATCGCTGCTTATGTGAACAATGGCAAACATGAGCTTGGGTTATCTCTCTTTCGGGATATGGTAATGGGTGAAGAAGGTGTGAAACCTGACCAAGTGACTGCAGTCTCGGTTTTATCTGGCTGTGCTCACTTGGGTTCTGTTGGGTTGTTGGTGGGGAAGTCAGTTCATGGGTTTATGGTCAAGAACCGGTGGGAGATGAATGCGGAGCTCGGTACAGTTTTGATCGGCATGTATGCGAAATGTGGGTTTTTGAAGGGAGCAGAACAGGTTTTTGAGTTGATGCAAGAGAAGAATGTGATGGCTTGGACCGCATTGATTTGTGGATCGGCACAACATGGATACAACAAAGAAGCATTGTGTTTGTTTGAGATGATGCAAAACAGCGGCGTAAGACCTAATGAACTGACTTTTACAGGAGTTCTCAGTGCTTGTGTGAACACGGGACTAGTTGAGGAGGGTCGAAAATATTTCAATTTGATTGAAGAAAGTGGCTTGGAGCTTCGGATTCAGCATTATGGATGCATGGTCGATTTGTATGGCAAGGCGGGGCTGTTAGAGGAAGCCTATGATTTTATTAAGAACATGAGACTTGAACCCAATATTGCTGTCTGGGGAGCTTTTTTGTCGGCTTGTAAGGAGCATAAACAGTTTGAGATGGCCGAAAGAGTTGTTGAGGAGGTCATGAAGACAGTGAAACCAGAGAATGATAGTGGGGTTTACTCTCTTATCGCCGATTTGTATGTTTTGGGTGGAAAGTGGGATGATGCTGAAAGAGTGAGGAAATTAATGGTGAACCACAAGGTGAGGAAGGTTAGGGGCTCTAGTTTTGTTCAAGTGGATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

1031

Amino Acids

115.95

Weight (kDa)

9.04

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 121 - 155 6.7e-07 PPR repeat family
PPR PF01535 125 - 150 3e-06 PPR repeat
PPR_2 PF13041 711 - 743 5e-07 PPR repeat family
PPR_1 PF12854 712 - 738 5e-06 PPR repeat
PPR PF01535 713 - 741 2.1e-08 PPR repeat
PPR_2 PF13041 742 - 792 1.6e-07 PPR repeat family
PPR_2 PF13041 846 - 895 2.4e-10 PPR repeat family
E_motif PF20431 963 - 1027 7.8e-07 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1233, 1440
Acc36I ACCTGC 1 cut(s) 1018
AccII CGCG 4 cut(s) 203, 374, 454, 488
AclWI GGATC 4 cut(s) 266, 990, 1393, 2578
AcoI YGGCCR 4 cut(s) 369, 1638, 2052, 2904
AcsI RAATTY 3 cut(s) 847, 1648, 1679
AcuI CTGAAG 2 cut(s) 72, 317
AdeI CACNNNGTG 1 cut(s) 3049
AfaI GTAC 3 cut(s) 1929, 1972, 2461
AfeI AGCGCT 2 cut(s) 103, 189
AfiI CCNNNNNNNGG 5 cut(s) 82, 727, 1429, 1652, 1827
AflIII ACRYGT 1 cut(s) 486
AgeI ACCGGT 1 cut(s) 2433
AhlI ACTAGT 2 cut(s) 922, 2692
AjnI CCWGG 5 cut(s) 740, 1274, 1481, 1692, 2141
Alw21I GWGCWC 6 cut(s) 1308, 1384, 1515, 1591, 2374, 2457
Alw26I GTCTC 7 cut(s) 319, 862, 1541, 1836, 2089, 2356, 2827
AlwI GGATC 4 cut(s) 266, 990, 1393, 2578
Ama87I CYCGRG 2 cut(s) 257, 2027
Aor51HI AGCGCT 2 cut(s) 103, 189
AoxI GGCC 8 cut(s) 369, 827, 1272, 1420, 1638, 1690, 2052, 2904
ApeKI GCWGC 7 cut(s) 734, 737, 1672, 1856, 1859, 1869, 2252
ApoI RAATTY 3 cut(s) 847, 1648, 1679
ArsI GACNNNNNNTTYG 3 cut(s) 35, 44, 76
AseI ATTAAT 1 cut(s) 3032
AsiGI ACCGGT 1 cut(s) 2433
Asp700I GAANNNNTTC 2 cut(s) 103, 156
AspLEI GCGC 4 cut(s) 104, 190, 203, 602
AspS9I GGNCC 7 cut(s) 60, 611, 827, 1003, 1210, 2172, 2553
AsuC2I CCSGG 2 cut(s) 2161, 2176
AsuHPI GGTGA 6 cut(s) 553, 1060, 2131, 2327, 3049, 3061
AvaI CYCGRG 2 cut(s) 257, 2027
AvaII GGWCC 6 cut(s) 60, 611, 1003, 1210, 2172, 2553
BaeGI GKGCMC 1 cut(s) 1723
BalI TGGCCA 2 cut(s) 1640, 2054
BanII GRGCYC 2 cut(s) 2457, 3068
BbsI GAAGAC 4 cut(s) 782, 1169, 1358, 2939
Bbv12I GWGCWC 6 cut(s) 1308, 1384, 1515, 1591, 2374, 2457
BbvI GCAGC 7 cut(s) 746, 749, 1659, 1843, 1846, 1881, 2239
BccI CCATC 6 cut(s) 1126, 1315, 1522, 1803, 2539, 2896
BceAI ACGGC 2 cut(s) 384, 814
BcgI CGANNNNNNTGC 2 cut(s) 779, 813
BciT130I CCWGG 5 cut(s) 742, 1276, 1483, 1694, 2143
BciVI GTATCC 1 cut(s) 2579
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 2 cut(s) 2161, 2176
BcoDI GTCTC 7 cut(s) 319, 862, 1541, 1836, 2089, 2356, 2827
BcuI ACTAGT 2 cut(s) 922, 2692
BfaI CTAG 7 cut(s) 906, 923, 978, 1338, 1427, 2693, 3069
BfmI CTRYAG 1 cut(s) 2346
BfoI RGCGCY 2 cut(s) 105, 191
BfuAI ACCTGC 1 cut(s) 1018
BfuI GTATCC 1 cut(s) 2579
Bme1390I CCNGG 7 cut(s) 742, 1276, 1483, 1694, 2143, 2161, 2176
Bme18I GGWCC 6 cut(s) 60, 611, 1003, 1210, 2172, 2553
BmeT110I CYCGRG 2 cut(s) 257, 2027
BmgT120I GGNCC 7 cut(s) 60, 611, 827, 1003, 1210, 2172, 2553
BmiI GGNNCC 2 cut(s) 62, 612
BmrFI CCNGG 7 cut(s) 742, 1276, 1483, 1694, 2143, 2161, 2176
BmsI GCATC 7 cut(s) 132, 1702, 2086, 2517, 2610, 2756, 3001
BoxI GACNNNNGTC 2 cut(s) 609, 2348
BpiI GAAGAC 4 cut(s) 782, 1169, 1358, 2939
BpmI CTGGAG 2 cut(s) 1108, 1297
Bpu10I CCTNAGC 1 cut(s) 1149
BpuMI CCSGG 2 cut(s) 2161, 2176
Bsa29I ATCGAT 1 cut(s) 994
BsaAI YACGTR 1 cut(s) 2044
BsaI GGTCTC 2 cut(s) 862, 1836
BsaJI CCNNGG 4 cut(s) 56, 999, 1693, 2068
BsaWI WCCGGW 1 cut(s) 2433
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 1928, 1958
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 727, 1429, 1652, 1827
Bse118I RCCGGY 4 cut(s) 583, 720, 1917, 2433
Bse1I ACTGG 3 cut(s) 861, 2202, 2216
Bse3DI GCAATG 3 cut(s) 11, 1773, 2250
BseBI CCWGG 5 cut(s) 742, 1276, 1483, 1694, 2143
BseCI ATCGAT 1 cut(s) 994
BseDI CCNNGG 4 cut(s) 56, 999, 1693, 2068
BseGI GGATG 9 cut(s) 418, 968, 1137, 1326, 1390, 1533, 2101, 2771, 3013
BseLI CCNNNNNNNGG 5 cut(s) 82, 727, 1429, 1652, 1827
BseMI GCAATG 3 cut(s) 11, 1773, 2250
BseMII CTCAG 6 cut(s) 79, 444, 1536, 1623, 2115, 2683
BseNI ACTGG 3 cut(s) 861, 2202, 2216
BseRI GAGGAG 2 cut(s) 2714, 2936
BseSI GKGCMC 1 cut(s) 1723
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 7 cut(s) 746, 749, 1659, 1843, 1846, 1881, 2239
Bsh1236I CGCG 4 cut(s) 203, 374, 454, 488
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 8 cut(s) 371, 829, 1274, 1422, 1640, 1692, 2054, 2906
BshTI ACCGGT 1 cut(s) 2433
BshVI ATCGAT 1 cut(s) 994
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 6 cut(s) 1308, 1384, 1515, 1591, 2374, 2457
BsiHKCI CYCGRG 2 cut(s) 257, 2027
BsiSI CCGG 6 cut(s) 584, 721, 1918, 2160, 2175, 2434
BslFI GGGAC 2 cut(s) 46, 2703
BslI CCNNNNNNNGG 5 cut(s) 82, 727, 1429, 1652, 1827
BsmAI GTCTC 7 cut(s) 319, 862, 1541, 1836, 2089, 2356, 2827
BsmBI CGTCTC 3 cut(s) 319, 1541, 2089
BsmFI GGGAC 2 cut(s) 46, 2703
BsmI GAATGC 2 cut(s) 913, 2452
BsnI GGCC 8 cut(s) 371, 829, 1274, 1422, 1640, 1692, 2054, 2906
Bso31I GGTCTC 2 cut(s) 862, 1836
BsoBI CYCGRG 2 cut(s) 257, 2027
Bsp1286I GDGCHC 8 cut(s) 1308, 1384, 1515, 1591, 1723, 2374, 2457, 3068
Bsp143I GATC 9 cut(s) 271, 439, 480, 995, 1155, 1398, 2247, 2469, 2570
Bsp19I CCATGG 2 cut(s) 999, 2068
BspANI GGCC 8 cut(s) 371, 829, 1274, 1422, 1640, 1692, 2054, 2906
BspCNI CTCAG 6 cut(s) 78, 443, 1537, 1622, 2116, 2682
BspDI ATCGAT 1 cut(s) 994
BspFNI CGCG 4 cut(s) 203, 374, 454, 488
BspHI TCATGA 4 cut(s) 1158, 1347, 1554, 2928
BspLI GGNNCC 2 cut(s) 62, 612
BspMAI CTGCAG 1 cut(s) 2350
BspMI ACCTGC 1 cut(s) 1018
BspPI GGATC 4 cut(s) 266, 990, 1393, 2578
BspQI GCTCTTC 2 cut(s) 1879, 2123
BspTNI GGTCTC 2 cut(s) 862, 1836
BsrDI GCAATG 3 cut(s) 11, 1773, 2250
BsrFI RCCGGY 4 cut(s) 583, 720, 1917, 2433
BsrI ACTGG 3 cut(s) 861, 2202, 2216
BssAI RCCGGY 4 cut(s) 583, 720, 1917, 2433
BssECI CCNNGG 4 cut(s) 56, 999, 1693, 2068
BssMI GATC 9 cut(s) 271, 439, 480, 995, 1155, 1398, 2247, 2469, 2570
BssT1I CCWWGG 3 cut(s) 56, 999, 2068
Bst2UI CCWGG 5 cut(s) 742, 1276, 1483, 1694, 2143
Bst6I CTCTTC 2 cut(s) 1879, 2123
BstBAI YACGTR 1 cut(s) 2044
BstC8I GCNNGC 3 cut(s) 427, 1420, 1424
BstDEI CTNAG 8 cut(s) 65, 430, 714, 1149, 1545, 1609, 2124, 2669
BstDSI CCRYGG 2 cut(s) 999, 2068
BstEII GGTNACC 1 cut(s) 700
BstENI CCTNNNNNAGG 1 cut(s) 1427
BstF5I GGATG 9 cut(s) 418, 968, 1137, 1326, 1390, 1533, 2101, 2771, 3013
BstFNI CGCG 4 cut(s) 203, 374, 454, 488
BstH2I RGCGCY 2 cut(s) 105, 191
BstHHI GCGC 4 cut(s) 104, 190, 203, 602
BstKTI GATC 9 cut(s) 274, 442, 483, 998, 1158, 1401, 2250, 2472, 2573
BstMAI GTCTC 7 cut(s) 319, 862, 1541, 1836, 2089, 2356, 2827
BstMBI GATC 9 cut(s) 271, 439, 480, 995, 1155, 1398, 2247, 2469, 2570
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 3 cut(s) 329, 2249, 2555
BstNI CCWGG 5 cut(s) 742, 1276, 1483, 1694, 2143
BstNSI RCATGY 2 cut(s) 332, 2479
BstPAI GACNNNNGTC 2 cut(s) 609, 2348
BstPI GGTNACC 1 cut(s) 700
BstSCI CCNGG 7 cut(s) 740, 1274, 1481, 1692, 2141, 2159, 2174
BstSFI CTRYAG 1 cut(s) 2346
BstSLI GKGCMC 1 cut(s) 1723
BstUI CGCG 4 cut(s) 203, 374, 454, 488
BstV1I GCAGC 7 cut(s) 746, 749, 1659, 1843, 1846, 1881, 2239
BstV2I GAAGAC 4 cut(s) 782, 1169, 1358, 2939
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 2 cut(s) 748, 1376
BstYI RGATCY 1 cut(s) 271
BstZI CGGCCG 1 cut(s) 369
Bsu15I ATCGAT 1 cut(s) 994
BsuI GTATCC 1 cut(s) 2579
BsuRI GGCC 8 cut(s) 371, 829, 1274, 1422, 1640, 1692, 2054, 2906
BsuTUI ATCGAT 1 cut(s) 994
BtgI CCRYGG 2 cut(s) 999, 2068
BtsCI GGATG 9 cut(s) 418, 968, 1137, 1326, 1390, 1533, 2101, 2771, 3013
BtsI GCAGTG 1 cut(s) 2140
BtsIMutI CAGTG 9 cut(s) 438, 868, 1173, 1362, 1569, 2140, 2223, 2677, 2943
BveI ACCTGC 1 cut(s) 1018
Cac8I GCNNGC 3 cut(s) 427, 1420, 1424
CciI TCATGA 4 cut(s) 1158, 1347, 1554, 2928
CfoI GCGC 4 cut(s) 104, 190, 203, 602
Cfr10I RCCGGY 4 cut(s) 583, 720, 1917, 2433
Cfr13I GGNCC 7 cut(s) 60, 611, 827, 1003, 1210, 2172, 2553
ClaI ATCGAT 1 cut(s) 994
CseI GACGC 5 cut(s) 273, 494, 647, 740, 1467
Csp6I GTAC 3 cut(s) 1928, 1971, 2460
CspAI ACCGGT 1 cut(s) 2433
CviQI GTAC 3 cut(s) 1928, 1971, 2460
DdeI CTNAG 8 cut(s) 65, 430, 714, 1149, 1545, 1609, 2124, 2669
DpnI GATC 9 cut(s) 273, 441, 482, 997, 1157, 1400, 2249, 2471, 2572
DpnII GATC 9 cut(s) 271, 439, 480, 995, 1155, 1398, 2247, 2469, 2570
DraIII CACNNNGTG 1 cut(s) 3049
EaeI YGGCCR 4 cut(s) 369, 1638, 2052, 2904
EagI CGGCCG 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 1879, 2123
EarI CTCTTC 2 cut(s) 1879, 2123
EciI GGCGGA 2 cut(s) 1151, 1340
Ecl136II GAGCTC 1 cut(s) 2455
EclXI CGGCCG 1 cut(s) 369
Eco130I CCWWGG 3 cut(s) 56, 999, 2068
Eco147I AGGCCT 2 cut(s) 1274, 1422
Eco24I GRGCYC 2 cut(s) 2457, 3068
Eco31I GGTCTC 2 cut(s) 862, 1836
Eco47I GGWCC 6 cut(s) 60, 611, 1003, 1210, 2172, 2553
Eco47III AGCGCT 2 cut(s) 103, 189
Eco52I CGGCCG 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 2455
Eco57I CTGAAG 2 cut(s) 72, 317
Eco88I CYCGRG 2 cut(s) 257, 2027
Eco91I GGTNACC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 2455
EcoNI CCTNNNNNAGG 1 cut(s) 1427
EcoO109I RGGNCCY 1 cut(s) 611
EcoO65I GGTNACC 1 cut(s) 700
EcoRII CCWGG 5 cut(s) 740, 1274, 1481, 1692, 2141
EcoT14I CCWWGG 3 cut(s) 56, 999, 2068
EcoT22I ATGCAT 2 cut(s) 792, 2771
EcoT38I GRGCYC 2 cut(s) 2457, 3068
ErhI CCWWGG 3 cut(s) 56, 999, 2068
Esp3I CGTCTC 3 cut(s) 319, 1541, 2089
FalI AAGNNNNNCTT 6 cut(s) 91, 123, 111, 143, 290, 322
FaqI GGGAC 2 cut(s) 46, 2703
FauI CCCGC 2 cut(s) 930, 2785
FbaI TGATCA 1 cut(s) 439
FokI GGATG 9 cut(s) 425, 975, 1144, 1333, 1377, 1540, 2108, 2778, 3020
FriOI GRGCYC 2 cut(s) 2457, 3068
FspBI CTAG 7 cut(s) 906, 923, 978, 1338, 1427, 2693, 3069
GlaI GCGC 4 cut(s) 103, 189, 202, 601
GsuI CTGGAG 2 cut(s) 1108, 1297
HaeII RGCGCY 2 cut(s) 105, 191
HaeIII GGCC 8 cut(s) 371, 829, 1274, 1422, 1640, 1692, 2054, 2906
HapII CCGG 6 cut(s) 584, 721, 1918, 2160, 2175, 2434
HgaI GACGC 5 cut(s) 273, 494, 647, 740, 1467
HhaI GCGC 4 cut(s) 104, 190, 203, 602
Hin6I GCGC 4 cut(s) 102, 188, 201, 600
HinP1I GCGC 4 cut(s) 102, 188, 201, 600
HindIII AAGCTT 1 cut(s) 1434
HinfI GANTC 5 cut(s) 152, 464, 1070, 2036, 2752
HpaII CCGG 6 cut(s) 584, 721, 1918, 2160, 2175, 2434
HphI GGTGA 6 cut(s) 553, 1060, 2131, 2327, 3049, 3061
Hpy166II GTNNAC 5 cut(s) 2105, 2263, 2683, 2965, 3040
Hpy188III TCNNGA 9 cut(s) 844, 918, 1087, 1159, 1348, 1555, 2300, 2428, 2929
Hpy8I GTNNAC 5 cut(s) 2105, 2263, 2683, 2965, 3040
Hpy99I CGWCG 3 cut(s) 350, 488, 2117
HpyAV CCTTC 9 cut(s) 87, 181, 545, 953, 1682, 1831, 2315, 2494, 3049
HpyCH4IV ACGT 2 cut(s) 2043, 2076
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 2249, 2555
HpyF3I CTNAG 8 cut(s) 65, 430, 714, 1149, 1545, 1609, 2124, 2669
HpySE526I ACGT 2 cut(s) 2043, 2076
HspAI GCGC 4 cut(s) 102, 188, 201, 600
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 9 cut(s) 271, 439, 480, 995, 1155, 1398, 2247, 2469, 2570
LguI GCTCTTC 2 cut(s) 1879, 2123
Lsp1109I GCAGC 7 cut(s) 746, 749, 1659, 1843, 1846, 1881, 2239
LweI GCATC 7 cut(s) 132, 1702, 2086, 2517, 2610, 2756, 3001
MaeI CTAG 7 cut(s) 906, 923, 978, 1338, 1427, 2693, 3069
MaeII ACGT 2 cut(s) 2043, 2076
MaeIII GTNAC 6 cut(s) 520, 571, 700, 2072, 2137, 2341
MalI GATC 9 cut(s) 273, 441, 482, 997, 1157, 1400, 2249, 2471, 2572
MboI GATC 9 cut(s) 271, 439, 480, 995, 1155, 1398, 2247, 2469, 2570
MfeI CAATTG 1 cut(s) 1976
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 8 cut(s) 1308, 1384, 1515, 1591, 1723, 2374, 2457, 3068
MlsI TGGCCA 2 cut(s) 1640, 2054
MluCI AATT 7 cut(s) 156, 847, 1648, 1679, 1976, 2719, 3029
MluI ACGCGT 1 cut(s) 486
MluNI TGGCCA 2 cut(s) 1640, 2054
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 3 cut(s) 1030, 1237, 1426
Mox20I TGGCCA 2 cut(s) 1640, 2054
Mph1103I ATGCAT 2 cut(s) 792, 2771
MroXI GAANNNNTTC 2 cut(s) 103, 156
MscI TGGCCA 2 cut(s) 1640, 2054
MslI CAYNNNNRTG 3 cut(s) 1374, 2046, 2236
Msp20I TGGCCA 2 cut(s) 1640, 2054
MspA1I CMGCKG 2 cut(s) 340, 2631
MspI CCGG 6 cut(s) 584, 721, 1918, 2160, 2175, 2434
MspR9I CCNGG 7 cut(s) 742, 1276, 1483, 1694, 2143, 2161, 2176
MunI CAATTG 1 cut(s) 1976
Mva1269I GAATGC 2 cut(s) 913, 2452
MvaI CCWGG 5 cut(s) 742, 1276, 1483, 1694, 2143
MvnI CGCG 4 cut(s) 203, 374, 454, 488
MwoI GCNNNNNNNGC 3 cut(s) 329, 2249, 2555
NciI CCSGG 2 cut(s) 2161, 2176
NcoI CCATGG 2 cut(s) 999, 2068
NdeII GATC 9 cut(s) 271, 439, 480, 995, 1155, 1398, 2247, 2469, 2570
NlaIV GGNNCC 2 cut(s) 62, 612
NmuCI GTSAC 2 cut(s) 2137, 2341
NsiI ATGCAT 2 cut(s) 792, 2771
NspI RCATGY 2 cut(s) 332, 2479
PagI TCATGA 4 cut(s) 1158, 1347, 1554, 2928
PceI AGGCCT 2 cut(s) 1274, 1422
PciSI GCTCTTC 2 cut(s) 1879, 2123
PctI GAATGC 2 cut(s) 913, 2452
PdmI GAANNNNTTC 2 cut(s) 103, 156
PfeI GAWTC 4 cut(s) 152, 1070, 2036, 2752
PfoI TCCNGGA 1 cut(s) 1481
PinAI ACCGGT 1 cut(s) 2433
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 2044
PpuMI RGGWCCY 1 cut(s) 611
PshAI GACNNNNGTC 2 cut(s) 609, 2348
PshBI ATTAAT 1 cut(s) 3032
PsiI TTATAA 2 cut(s) 1233, 1440
Psp124BI GAGCTC 1 cut(s) 2457
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 5 cut(s) 740, 1274, 1481, 1692, 2141
PspEI GGTNACC 1 cut(s) 700
PspGI CCWGG 5 cut(s) 740, 1274, 1481, 1692, 2141
PspN4I GGNNCC 2 cut(s) 62, 612
PspPI GGNCC 7 cut(s) 60, 611, 827, 1003, 1210, 2172, 2553
PspPPI RGGWCCY 1 cut(s) 611
PstI CTGCAG 1 cut(s) 2350
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 3 cut(s) 1929, 1972, 2461
RsaNI GTAC 3 cut(s) 1928, 1971, 2460
RseI CAYNNNNRTG 3 cut(s) 1374, 2046, 2236
SacI GAGCTC 1 cut(s) 2457
SapI GCTCTTC 2 cut(s) 1879, 2123
Sau3AI GATC 9 cut(s) 271, 439, 480, 995, 1155, 1398, 2247, 2469, 2570
Sau96I GGNCC 7 cut(s) 60, 611, 827, 1003, 1210, 2172, 2553
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 7 cut(s) 742, 1276, 1483, 1694, 2143, 2161, 2176
SduI GDGCHC 8 cut(s) 1308, 1384, 1515, 1591, 1723, 2374, 2457, 3068
SfaNI GCATC 7 cut(s) 132, 1702, 2086, 2517, 2610, 2756, 3001
SfcI CTRYAG 1 cut(s) 2346
SinI GGWCC 6 cut(s) 60, 611, 1003, 1210, 2172, 2553
SmiMI CAYNNNNRTG 3 cut(s) 1374, 2046, 2236
SpeI ACTAGT 2 cut(s) 922, 2692
Sse9I AATT 7 cut(s) 156, 847, 1648, 1679, 1976, 2719, 3029
SseBI AGGCCT 2 cut(s) 1274, 1422
SspI AATATT 4 cut(s) 944, 1744, 2714, 2848
SspMI CTAG 7 cut(s) 906, 923, 978, 1338, 1427, 2693, 3069
SstI GAGCTC 1 cut(s) 2457
StuI AGGCCT 2 cut(s) 1274, 1422
StyD4I CCNGG 7 cut(s) 740, 1274, 1481, 1692, 2141, 2159, 2174
StyI CCWWGG 3 cut(s) 56, 999, 2068
TaiI ACGT 2 cut(s) 2046, 2079
TasI AATT 7 cut(s) 156, 847, 1648, 1679, 1976, 2719, 3029
TauI GCSGC 4 cut(s) 374, 454, 1573, 2634
TfiI GAWTC 4 cut(s) 152, 1070, 2036, 2752
TscAI CASTG 9 cut(s) 438, 868, 1173, 1362, 1569, 2140, 2223, 2677, 2943
TseFI GTSAC 2 cut(s) 2137, 2341
TseI GCWGC 7 cut(s) 734, 737, 1672, 1856, 1859, 1869, 2252
Tsp45I GTSAC 2 cut(s) 2137, 2341
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 9 cut(s) 438, 868, 1173, 1362, 1569, 2140, 2223, 2677, 2943
VpaK11BI GGWCC 6 cut(s) 60, 611, 1003, 1210, 2172, 2553
VspI ATTAAT 1 cut(s) 3032
XagI CCTNNNNNAGG 1 cut(s) 1427
XapI RAATTY 3 cut(s) 847, 1648, 1679
XceI RCATGY 2 cut(s) 332, 2479
XmnI GAANNNNTTC 2 cut(s) 103, 156
XspI CTAG 7 cut(s) 906, 923, 978, 1338, 1427, 2693, 3069
Zsp2I ATGCAT 2 cut(s) 792, 2771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.