Prupe.4G119600_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
6469517 .. 6471196
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G119600.1

Sequence Viewer

Length: 1365 bp
ATGCAATCCTTGGTCAATCTGTCTAACCTTCTGATCAAACCCAGAAACCATGCCTCTTGTTGGTTTGTCCAAAATTTCAATTCATGGGTTAAAGCTATACGAAATGCTCCTTCCCCCCATGAAGCTTTGGGTATCTATTGTCAAATGCAACGTCAATCTGCTCGTTTCGATAGCTTCTCCATGCTCCTTACGCTGAAATCATGCACCCAATTGAAGAACGATGCAGTCATTCAACATCTCCATGCCCACATCCTTAAACTTGGCTTTAGATCTGATCTATATGTGGCCAGTGCACTACTCGCTGCGCGCTCTATTGCCTCGCTTGAAGATGCCTGTGTACTGTTCGATGAAATGCCTGACAAGAACACGGTCACCTGGAATATAATGATTTCTGGGTATTTGAGATCTGGGGATGTAAAGAGAGCGCGTTTGGTTTTTGAGGAAATGCCATTGAGAGATATTGCTTCATTTTCTGCCATGATCAGTGGGTACGTGCAAAATGGCAATCATAAGCATGCCTTATTGCTCTTTCGGAGTATGGTAATGAATGAGAACGAAGGTATAAGACCTGACGGAGGGATTGCAGTCTCAGTTTTATCCTCTTGTGCCCGCATGGGTACCCATGGGCTGTTGTTGGGGAAATCAGTTCATGGGTTTATGGTCAAGAATCACTGGGAGTTGAATGTGGAACTTGGCACCACATTGGTTGACATGTATGCTAAGTGTAGGTCTTTGAAAGGAGCTGCAAGGGTTTTTGAATTGATGCAAGAAAGAAGTGTCACGTCTTGGACTGCATTGATTTGTGGATCAGCACAACATGGCTGCAGCAGAGCAGCATTTTCCTTGTTTGGGAAGATGCAACAAGCCGGTGTGAGACCTAGTGAACAGACTTTCACAGGAATTCTTAGTGCTTGTATGCATAAAGGACTAGTTGAGGAGGGGCGCAAATACTTCAAGTTGATGGAAGAAAGTGGCTTGGAGCCTACAATTCAGCATTATGGATGCATGGTCCATTTGTATTGTAGGGCAGGACTGTTAGAAGAAGCTTATGAGGTAATTAAGAAAATGAGACTTGAACCCGATATTTATGTCTGGGAATCTTTTTTGTCTGCTTGTATGAAGCATAAACGGTACGAGATGGCAGAAAGAGTAGCTGAGCAAGCCATGAAGATGGTAAAACCAGGAAACGATGATCGGCTTTATTCTCTTATCTCGGATTTGTATGCTTTGGGTGGAAAGTGGGATGATGCTGACAGAGTGAGGAACTTAATGGTCAAGCAAAATGTGAGGACGTTTAAGGGCTCTAGGTTTGTTAGGACGGATAATCGAATGTTAACATTCCATCTGTCCTCGGGCAACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

51.25

Weight (kDa)

9.1

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 617
AccB1I GGYRCC 2 cut(s) 617, 695
AccII CGCG 2 cut(s) 307, 427
AciI CCGC 1 cut(s) 610
AclWI GGATC 1 cut(s) 814
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 2 cut(s) 73, 900
AfaI GTAC 4 cut(s) 339, 491, 619, 1133
AfiI CCNNNNNNNGG 3 cut(s) 60, 575, 849
AflIII ACRYGT 1 cut(s) 711
AgsI TTSAA 9 cut(s) 79, 214, 233, 326, 682, 736, 758, 955, 1076
AhlI ACTAGT 1 cut(s) 928
AjiI CACGTC 1 cut(s) 783
AjnI CCWGG 2 cut(s) 374, 1180
AluBI AGCT 6 cut(s) 95, 125, 174, 743, 1046, 1154
AluI AGCT 6 cut(s) 95, 125, 174, 743, 1046, 1154
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 3 cut(s) 592, 868, 1063
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 1 cut(s) 814
Ama87I CYCGRG 1 cut(s) 1351
AoxI GGCC 1 cut(s) 285
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 5 cut(s) 302, 743, 822, 825, 833
ApoI RAATTY 2 cut(s) 73, 900
ArsI GACNNNNNNTTYG 2 cut(s) 136, 168
Asp718I GGTACC 1 cut(s) 617
AspLEI GCGC 4 cut(s) 307, 309, 427, 945
AspS9I GGNCC 1 cut(s) 1009
AsuHPI GGTGA 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 1351
AvaII GGWCC 1 cut(s) 1009
BaeGI GKGCMC 2 cut(s) 295, 610
BalI TGGCCA 1 cut(s) 287
BanI GGYRCC 2 cut(s) 617, 695
BanII GRGCYC 1 cut(s) 1304
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 5 cut(s) 289, 730, 809, 837, 845
BccI CCATC 4 cut(s) 955, 1132, 1165, 1350
BciT130I CCWGG 2 cut(s) 376, 1182
BclI TGATCA 2 cut(s) 33, 480
BcoDI GTCTC 3 cut(s) 592, 868, 1063
BcuI ACTAGT 1 cut(s) 928
BfaI CTAG 3 cut(s) 879, 929, 1305
BfmI CTRYAG 1 cut(s) 823
BglII AGATCT 2 cut(s) 269, 404
BisI GCNGC 5 cut(s) 303, 744, 823, 826, 834
BlpI GCTNAGC 1 cut(s) 1155
BlsI GCNGC 5 cut(s) 304, 745, 824, 827, 835
Bme1390I CCNGG 2 cut(s) 376, 1182
Bme18I GGWCC 1 cut(s) 1009
BmeT110I CYCGRG 1 cut(s) 1351
BmgBI CACGTC 1 cut(s) 783
BmgT120I GGNCC 1 cut(s) 1009
BmiI GGNNCC 3 cut(s) 619, 697, 981
BmrFI CCNGG 2 cut(s) 376, 1182
BmrI ACTGGG 1 cut(s) 682
BmsI GCATC 6 cut(s) 211, 319, 753, 846, 992, 1237
BmuI ACTGGG 1 cut(s) 682
Bpu1102I GCTNAGC 1 cut(s) 1155
BsaAI YACGTR 1 cut(s) 493
BsaI GGTCTC 1 cut(s) 868
BsaJI CCNNGG 3 cut(s) 9, 622, 1350
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 575, 849
Bse118I RCCGGY 1 cut(s) 866
Bse1I ACTGG 2 cut(s) 288, 677
BseBI CCWGG 2 cut(s) 376, 1182
BseDI CCNNGG 3 cut(s) 9, 622, 1350
BseGI GGATG 4 cut(s) 249, 418, 1007, 1249
BseLI CCNNNNNNNGG 3 cut(s) 60, 575, 849
BseMII CTCAG 2 cut(s) 603, 1146
BseNI ACTGG 2 cut(s) 288, 677
BsePI GCGCGC 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 950
BseSI GKGCMC 2 cut(s) 295, 610
BseXI GCAGC 5 cut(s) 289, 730, 809, 837, 845
Bsh1236I CGCG 2 cut(s) 307, 427
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 2 cut(s) 617, 695
BsiHKAI GWGCWC 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 1351
BsiSI CCGG 1 cut(s) 867
BslI CCNNNNNNNGG 3 cut(s) 60, 575, 849
BsmAI GTCTC 3 cut(s) 592, 868, 1063
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 868
BsoBI CYCGRG 1 cut(s) 1351
Bsp1286I GDGCHC 3 cut(s) 295, 610, 1304
Bsp143I GATC 7 cut(s) 33, 269, 274, 404, 480, 806, 1192
Bsp1720I GCTNAGC 1 cut(s) 1155
Bsp19I CCATGG 1 cut(s) 622
BspACI CCGC 1 cut(s) 610
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 2 cut(s) 602, 1147
BspFNI CGCG 2 cut(s) 307, 427
BspHI TCATGA 1 cut(s) 1361
BspLI GGNNCC 3 cut(s) 619, 697, 981
BspMAI CTGCAG 1 cut(s) 827
BspPI GGATC 1 cut(s) 814
BspT107I GGYRCC 2 cut(s) 617, 695
BspTNI GGTCTC 1 cut(s) 868
BsrFI RCCGGY 1 cut(s) 866
BsrI ACTGG 2 cut(s) 288, 677
BssAI RCCGGY 1 cut(s) 866
BssECI CCNNGG 3 cut(s) 9, 622, 1350
BssHII GCGCGC 1 cut(s) 305
BssMI GATC 7 cut(s) 33, 269, 274, 404, 480, 806, 1192
BssT1I CCWWGG 2 cut(s) 9, 622
Bst2UI CCWGG 2 cut(s) 376, 1182
Bst4CI ACNGT 4 cut(s) 342, 370, 1035, 1131
BstBAI YACGTR 1 cut(s) 493
BstC8I GCNNGC 4 cut(s) 307, 516, 610, 1161
BstDEI CTNAG 4 cut(s) 589, 720, 905, 1155
BstDSI CCRYGG 1 cut(s) 622
BstEII GGTNACC 1 cut(s) 370
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 4 cut(s) 249, 418, 1007, 1249
BstFNI CGCG 2 cut(s) 307, 427
BstHHI GCGC 4 cut(s) 307, 309, 427, 945
BstKTI GATC 7 cut(s) 36, 272, 277, 407, 483, 809, 1195
BstMAI GTCTC 3 cut(s) 592, 868, 1063
BstMBI GATC 7 cut(s) 33, 269, 274, 404, 480, 806, 1192
BstMWI GCNNNNNNNGC 3 cut(s) 190, 299, 1160
BstNI CCWGG 2 cut(s) 376, 1182
BstNSI RCATGY 2 cut(s) 518, 715
BstPI GGTNACC 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 374, 1180
BstSFI CTRYAG 1 cut(s) 823
BstSLI GKGCMC 2 cut(s) 295, 610
BstUI CGCG 2 cut(s) 307, 427
BstV1I GCAGC 5 cut(s) 289, 730, 809, 837, 845
BstX2I RGATCY 2 cut(s) 269, 404
BstXI CCANNNNNNTGG 1 cut(s) 1171
BstYI RGATCY 2 cut(s) 269, 404
BsuRI GGCC 1 cut(s) 287
BtgI CCRYGG 1 cut(s) 622
BtrI CACGTC 1 cut(s) 783
BtsCI GGATG 4 cut(s) 249, 418, 1007, 1249
BtsIMutI CAGTG 3 cut(s) 295, 490, 670
Cac8I GCNNGC 4 cut(s) 307, 516, 610, 1161
CciI TCATGA 1 cut(s) 1361
CfoI GCGC 4 cut(s) 307, 309, 427, 945
Cfr10I RCCGGY 1 cut(s) 866
Cfr13I GGNCC 1 cut(s) 1009
Csp6I GTAC 4 cut(s) 338, 490, 618, 1132
CspCI CAANNNNNGTGG 2 cut(s) 688, 723
CviQI GTAC 4 cut(s) 338, 490, 618, 1132
DdeI CTNAG 4 cut(s) 589, 720, 905, 1155
DpnI GATC 7 cut(s) 35, 271, 276, 406, 482, 808, 1194
DpnII GATC 7 cut(s) 33, 269, 274, 404, 480, 806, 1192
EaeI YGGCCR 1 cut(s) 285
Eco130I CCWWGG 2 cut(s) 9, 622
Eco24I GRGCYC 1 cut(s) 1304
Eco31I GGTCTC 1 cut(s) 868
Eco47I GGWCC 1 cut(s) 1009
Eco88I CYCGRG 1 cut(s) 1351
Eco91I GGTNACC 1 cut(s) 370
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoO65I GGTNACC 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 900
EcoRII CCWGG 2 cut(s) 374, 1180
EcoT14I CCWWGG 2 cut(s) 9, 622
EcoT22I ATGCAT 2 cut(s) 921, 1007
EcoT38I GRGCYC 1 cut(s) 1304
ErhI CCWWGG 2 cut(s) 9, 622
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FauI CCCGC 1 cut(s) 617
FbaI TGATCA 2 cut(s) 33, 480
Fnu4HI GCNGC 5 cut(s) 303, 744, 823, 826, 834
FokI GGATG 4 cut(s) 236, 425, 1014, 1256
FriOI GRGCYC 1 cut(s) 1304
Fsp4HI GCNGC 5 cut(s) 303, 744, 823, 826, 834
FspBI CTAG 3 cut(s) 879, 929, 1305
GlaI GCGC 4 cut(s) 306, 308, 426, 944
GluI GCNGC 5 cut(s) 303, 744, 823, 826, 834
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 867
HhaI GCGC 4 cut(s) 307, 309, 427, 945
Hin6I GCGC 4 cut(s) 305, 307, 425, 943
HinP1I GCGC 4 cut(s) 305, 307, 425, 943
HincII GTYRAC 2 cut(s) 709, 1335
HindII GTYRAC 2 cut(s) 709, 1335
HindIII AAGCTT 2 cut(s) 123, 1044
HinfI GANTC 2 cut(s) 667, 1097
HpaI GTTAAC 1 cut(s) 1335
HpaII CCGG 1 cut(s) 867
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 5 cut(s) 293, 338, 709, 884, 1335
Hpy188I TCNGA 4 cut(s) 33, 274, 534, 1216
Hpy188III TCNNGA 2 cut(s) 664, 1362
Hpy8I GTNNAC 5 cut(s) 293, 338, 709, 884, 1335
HpyAV CCTTC 3 cut(s) 38, 120, 551
HpyCH4III ACNGT 4 cut(s) 342, 370, 1035, 1131
HpyCH4IV ACGT 4 cut(s) 151, 492, 782, 1292
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 299, 1160
HpyF3I CTNAG 4 cut(s) 589, 720, 905, 1155
HpySE526I ACGT 4 cut(s) 151, 492, 782, 1292
HspAI GCGC 4 cut(s) 305, 307, 425, 943
KpnI GGTACC 1 cut(s) 621
Ksp22I TGATCA 2 cut(s) 33, 480
KspAI GTTAAC 1 cut(s) 1335
Kzo9I GATC 7 cut(s) 33, 269, 274, 404, 480, 806, 1192
LmnI GCTCC 4 cut(s) 112, 189, 740, 979
Lsp1109I GCAGC 5 cut(s) 289, 730, 809, 837, 845
LweI GCATC 6 cut(s) 211, 319, 753, 846, 992, 1237
MaeI CTAG 3 cut(s) 879, 929, 1305
MaeII ACGT 4 cut(s) 151, 492, 782, 1292
MaeIII GTNAC 2 cut(s) 370, 778
MalI GATC 7 cut(s) 35, 271, 276, 406, 482, 808, 1194
MboI GATC 7 cut(s) 33, 269, 274, 404, 480, 806, 1192
MboII GAAGA 6 cut(s) 226, 338, 865, 977, 1052, 1180
MfeI CAATTG 1 cut(s) 209
MflI RGATCY 2 cut(s) 269, 404
MhlI GDGCHC 3 cut(s) 295, 610, 1304
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 7 cut(s) 73, 79, 209, 758, 900, 987, 1056
MluNI TGGCCA 1 cut(s) 287
Mox20I TGGCCA 1 cut(s) 287
Mph1103I ATGCAT 2 cut(s) 921, 1007
MscI TGGCCA 1 cut(s) 287
MseI TTAA 6 cut(s) 90, 255, 1059, 1268, 1296, 1334
MslI CAYNNNNRTG 3 cut(s) 240, 513, 1169
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 1 cut(s) 867
MspR9I CCNGG 2 cut(s) 376, 1182
MunI CAATTG 1 cut(s) 209
MvaI CCWGG 2 cut(s) 376, 1182
MvnI CGCG 2 cut(s) 307, 427
MwoI GCNNNNNNNGC 3 cut(s) 190, 299, 1160
NcoI CCATGG 1 cut(s) 622
NdeII GATC 7 cut(s) 33, 269, 274, 404, 480, 806, 1192
NlaIV GGNNCC 3 cut(s) 619, 697, 981
NmuCI GTSAC 2 cut(s) 370, 778
NsiI ATGCAT 2 cut(s) 921, 1007
NspI RCATGY 2 cut(s) 518, 715
PaeI GCATGC 1 cut(s) 518
PagI TCATGA 1 cut(s) 1361
PauI GCGCGC 1 cut(s) 305
PciI ACATGT 1 cut(s) 711
PfeI GAWTC 2 cut(s) 667, 1097
PkrI GCNGC 5 cut(s) 304, 745, 824, 827, 835
Ppu21I YACGTR 1 cut(s) 493
PscI ACATGT 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 374, 1180
PspEI GGTNACC 1 cut(s) 370
PspGI CCWGG 2 cut(s) 374, 1180
PspN4I GGNNCC 3 cut(s) 619, 697, 981
PspPI GGNCC 1 cut(s) 1009
PstI CTGCAG 1 cut(s) 827
PsuI RGATCY 2 cut(s) 269, 404
PteI GCGCGC 1 cut(s) 305
RsaI GTAC 4 cut(s) 339, 491, 619, 1133
RsaNI GTAC 4 cut(s) 338, 490, 618, 1132
RseI CAYNNNNRTG 3 cut(s) 240, 513, 1169
SaqAI TTAA 6 cut(s) 90, 255, 1059, 1268, 1296, 1334
SatI GCNGC 5 cut(s) 303, 744, 823, 826, 834
Sau3AI GATC 7 cut(s) 33, 269, 274, 404, 480, 806, 1192
Sau96I GGNCC 1 cut(s) 1009
ScrFI CCNGG 2 cut(s) 376, 1182
SduI GDGCHC 3 cut(s) 295, 610, 1304
SfaNI GCATC 6 cut(s) 211, 319, 753, 846, 992, 1237
SfcI CTRYAG 1 cut(s) 823
SinI GGWCC 1 cut(s) 1009
SmiMI CAYNNNNRTG 3 cut(s) 240, 513, 1169
SpeI ACTAGT 1 cut(s) 928
SphI GCATGC 1 cut(s) 518
Sse9I AATT 7 cut(s) 73, 79, 209, 758, 900, 987, 1056
SsiI CCGC 1 cut(s) 610
SspMI CTAG 3 cut(s) 879, 929, 1305
StyD4I CCNGG 2 cut(s) 374, 1180
StyI CCWWGG 2 cut(s) 9, 622
TaaI ACNGT 4 cut(s) 342, 370, 1035, 1131
TaiI ACGT 4 cut(s) 154, 495, 785, 1295
TaqI TCGA 3 cut(s) 168, 345, 1327
TasI AATT 7 cut(s) 73, 79, 209, 758, 900, 987, 1056
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 2 cut(s) 667, 1097
Tru1I TTAA 6 cut(s) 90, 255, 1059, 1268, 1296, 1334
Tru9I TTAA 6 cut(s) 90, 255, 1059, 1268, 1296, 1334
TscAI CASTG 3 cut(s) 295, 490, 677
TseFI GTSAC 2 cut(s) 370, 778
TseI GCWGC 5 cut(s) 302, 743, 822, 825, 833
Tsp45I GTSAC 2 cut(s) 370, 778
TspDTI ATGAA 8 cut(s) 72, 135, 363, 456, 560, 638, 1133, 1181
TspGWI ACGGA 2 cut(s) 588, 1334
TspRI CASTG 3 cut(s) 295, 490, 677
VneI GTGCAC 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 1009
XagI CCTNNNNNAGG 1 cut(s) 573
XapI RAATTY 2 cut(s) 73, 900
XceI RCATGY 2 cut(s) 518, 715
XspI CTAG 3 cut(s) 879, 929, 1305
Zsp2I ATGCAT 2 cut(s) 921, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.