Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003267

Physical Location & Seq

Genomic Coordinates Reverse (-)

15937277 .. 15937840

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG156600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGACAGTGGAGCCAGACAGCAAAAGTCGTGTTCAGCTTCATTCTCTGGTCCAACTATATAGTAATGCTTATAAGGTTATTAAGAACATAAAAGTTGAACCTGATGTTGAGGCCTGGAGTTCTTTTCTGTCTGCTTGTAAAGAGCACAAACAGTTTGGGATGGCGGAAAGAGTAGCTAGGGAGGTCATGAAAACAGTGAAGCCAGACAGCAAACATGGTGCTCGGCTTCATCCTCTGATCCAACTATATAGTAATGCAGGCCTGCTAGAGGAAGCTTATAAGGTTATCAAGGACATGAAACTCAAACCTTATGTTGCGTCCTGGATTTCTTTTCTTTCTGCTTGTAAGGAGCACAAACAGTTTGGGATGGTTGAAAGAGTAGCTGAGACGGTCATGATGACAGTGAAGCTGCACAGCAAACATGGTGCTCCGCTTCATTCTCATATCTCAGATATGAGGGATTTGAGAAAGTCAATGGCCAATCCAAATTTAGGGAAGATACATGATTTGCTGCAAAAATTTGACGAAGGCCAGGGAGCTATATGTTTTGATGCACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

187

Amino Acids

21.26

Weight (kDa)

9.37

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13211 FvH4_3g13220
malus_domestica	MD10G1225900.v1.1
prunus_persica	Prupe.4G119500_v2.0.a1 Prupe.4G119600_v2.0.a1
pyrus_communis	pycom10g18980
rosa_chinensis	RchiOBHm_Chr5g0021561 RchiOBHm_Chr5g0021571 RchiOBHm_Chr7g0219451
rosa_laevigata	RLG00000032615
rosa_multiflora	Rmu_co8317561.1_g000001 Rmu_co8317561.1_g000002 Rmu_co8347725.1_g000001 Rmu_sc0002052.1_g000015 Rmu_sc0002052.1_g000016 Rmu_sc0002052.1_g000017 Rmu_sc0003767.1_g000012 Rmu_sc0023070.1_g000006 Rmu_sc0023070.1_g000007 Rmu_sc0023070.1_g000008
rosa_roxburghii	Rroxscaffold_1G00057070 Rroxscaffold_1G00057080 Rroxscaffold_1G00057090
rosa_rugosa	Rorug05G0067400 Rorug05G0067400 Rorug07G0185200
rosa_samantha	Rh5AG156800 Rh5BG156000 Rh5BG156100 Rh5BG156200 Rh5CG170300 Rh5CG170400 Rh5DG156600 Rh7AG328000 Rh7BG318000 Rh7CG345400
rosa_wichuraiana	Rw7G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	75, 282
AciI	CCGC	2 cut(s)	167, 434
AclWI	GGATC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	2 cut(s)	490, 521
AfiI	CCNNNNNNNGG	2 cut(s)	271, 494
AgsI	TTSAA	2 cut(s)	101, 377
AjnI	CCWGG	3 cut(s)	116, 323, 534
AluBI	AGCT	6 cut(s)	40, 179, 278, 386, 412, 542
AluI	AGCT	6 cut(s)	40, 179, 278, 386, 412, 542
Alw21I	GWGCWC	4 cut(s)	150, 226, 357, 433
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	235
AoxI	GGCC	4 cut(s)	114, 262, 480, 532
ApeKI	GCWGC	2 cut(s)	412, 514
ApoI	RAATTY	2 cut(s)	490, 521
AspS9I	GGNCC	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	4 cut(s)	150, 226, 357, 433
BbvI	GCAGC	2 cut(s)	399, 501
BccI	CCATC	2 cut(s)	157, 364
BciT130I	CCWGG	3 cut(s)	118, 325, 536
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	2 cut(s)	180, 269
BisI	GCNGC	2 cut(s)	413, 515
BlsI	GCNGC	2 cut(s)	414, 516
Bme1390I	CCNGG	3 cut(s)	118, 325, 536
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	3 cut(s)	118, 325, 536
BmsI	GCATC	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 494
BseBI	CCWGG	3 cut(s)	118, 325, 536
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	3 cut(s)	168, 232, 375
BseLI	CCNNNNNNNGG	2 cut(s)	271, 494
BseMII	CTCAG	2 cut(s)	378, 465
BseXI	GCAGC	2 cut(s)	399, 501
BsgI	GTGCAG	1 cut(s)	398
BshFI	GGCC	4 cut(s)	116, 264, 482, 534
BsiHKAI	GWGCWC	4 cut(s)	150, 226, 357, 433
BslI	CCNNNNNNNGG	2 cut(s)	271, 494
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsnI	GGCC	4 cut(s)	116, 264, 482, 534
Bsp1286I	GDGCHC	4 cut(s)	150, 226, 357, 433
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	2 cut(s)	167, 434
BspANI	GGCC	4 cut(s)	116, 264, 482, 534
BspCNI	CTCAG	2 cut(s)	379, 464
BspHI	TCATGA	2 cut(s)	189, 396
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	1 cut(s)	240
Bst2UI	CCWGG	3 cut(s)	118, 325, 536
Bst4CI	ACNGT	7 cut(s)	10, 156, 199, 363, 394, 406, 561
BstC8I	GCNNGC	2 cut(s)	262, 266
BstDEI	CTNAG	2 cut(s)	387, 451
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	3 cut(s)	168, 232, 375
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	240
BstNI	CCWGG	3 cut(s)	118, 325, 536
BstSCI	CCNGG	3 cut(s)	116, 323, 534
BstV1I	GCAGC	2 cut(s)	399, 501
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	4 cut(s)	116, 264, 482, 534
BtsCI	GGATG	3 cut(s)	168, 232, 375
BtsIMutI	CAGTG	3 cut(s)	15, 204, 411
Cac8I	GCNNGC	2 cut(s)	262, 266
CciI	TCATGA	2 cut(s)	189, 396
Cfr13I	GGNCC	1 cut(s)	52
CseI	GACGC	1 cut(s)	309
CviAII	CATG	6 cut(s)	190, 218, 298, 397, 425, 506
DdeI	CTNAG	2 cut(s)	387, 451
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
EaeI	YGGCCR	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	182
Eco147I	AGGCCT	2 cut(s)	116, 264
Eco47I	GGWCC	1 cut(s)	52
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRII	CCWGG	3 cut(s)	116, 323, 534
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	6 cut(s)	193, 221, 301, 400, 428, 509
FatI	CATG	6 cut(s)	189, 217, 297, 396, 424, 505
Fnu4HI	GCNGC	2 cut(s)	413, 515
FokI	GGATG	3 cut(s)	175, 219, 382
Fsp4HI	GCNGC	2 cut(s)	413, 515
FspBI	CTAG	2 cut(s)	180, 269
GluI	GCNGC	2 cut(s)	413, 515
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	4 cut(s)	116, 264, 482, 534
HgaI	GACGC	1 cut(s)	309
Hin1II	CATG	6 cut(s)	193, 221, 301, 400, 428, 509
HindIII	AAGCTT	1 cut(s)	276
Hpy188I	TCNGA	2 cut(s)	240, 454
Hpy188III	TCNNGA	2 cut(s)	190, 397
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	7 cut(s)	10, 156, 199, 363, 394, 406, 561
HpyCH4V	TGCA	4 cut(s)	260, 415, 517, 557
HpyF3I	CTNAG	2 cut(s)	387, 451
Hsp92II	CATG	6 cut(s)	193, 221, 301, 400, 428, 509
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	4 cut(s)	13, 352, 436, 539
Lsp1109I	GCAGC	2 cut(s)	399, 501
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	2 cut(s)	180, 269
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	2 cut(s)	16, 511
MhlI	GDGCHC	4 cut(s)	150, 226, 357, 433
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	2 cut(s)	490, 521
MluNI	TGGCCA	1 cut(s)	482
MmeI	TCCRAC	2 cut(s)	79, 268
MnlI	CCTC	5 cut(s)	106, 178, 246, 265, 453
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	482
MspR9I	CCNGG	3 cut(s)	118, 325, 536
MvaI	CCWGG	3 cut(s)	118, 325, 536
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	6 cut(s)	193, 221, 301, 400, 428, 509
NlaIV	GGNNCC	1 cut(s)	15
NmeAIII	GCCGAG	1 cut(s)	205
PagI	TCATGA	2 cut(s)	189, 396
PceI	AGGCCT	2 cut(s)	116, 264
PfoI	TCCNGGA	1 cut(s)	323
PkrI	GCNGC	2 cut(s)	414, 516
PsiI	TTATAA	2 cut(s)	75, 282
Psp6I	CCWGG	3 cut(s)	116, 323, 534
PspGI	CCWGG	3 cut(s)	116, 323, 534
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	413, 515
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	3 cut(s)	118, 325, 536
SduI	GDGCHC	4 cut(s)	150, 226, 357, 433
SfaNI	GCATC	1 cut(s)	544
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	490, 521
SseBI	AGGCCT	2 cut(s)	116, 264
SsiI	CCGC	2 cut(s)	167, 434
SspMI	CTAG	2 cut(s)	180, 269
StuI	AGGCCT	2 cut(s)	116, 264
StyD4I	CCNGG	3 cut(s)	116, 323, 534
TaaI	ACNGT	7 cut(s)	10, 156, 199, 363, 394, 406, 561
TasI	AATT	2 cut(s)	490, 521
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	3 cut(s)	15, 204, 411
TseI	GCWGC	2 cut(s)	412, 514
TspDTI	ATGAA	6 cut(s)	17, 32, 206, 221, 314, 428
TspRI	CASTG	3 cut(s)	15, 204, 411
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	2 cut(s)	490, 521
XspI	CTAG	2 cut(s)	180, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.