Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003267

Physical Location & Seq

Genomic Coordinates Reverse (-)

6467070 .. 6469171

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G119500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCAATCCATCGTTGTATCGCTCTCCAACCATTTAATAAGACCCACGAACCACGCCTTTTTCTTCAAAAGCTTCAATTCTTGGGTTTCGGCTATACGAAATGCTCCTTCCCCCCAAAAGGCTTTGAACATCTACTCTCAAATGCACCGTCAGTCTGTTCCTTTTGATAGTTTTTCCATGCTCTATACGCTAAAATCATGTACCCAGTTAAGGAATCAAGAAATCATTCAACACCTCCATGCCCATATCATGAAACTTGGCTTTGGCAATCATGTATATGTGGCCACTTCACTTCTCCATGCGTACGTTGTTGTCTCGTTCGTGGATGCCTGTGTACTGTTCGATGAAATGCCTGAGAAGAACACGGTCACGTGGAACACGATGATTGCAGGGTATTCGAGGTCGGGGGATGTAGAGAGAGCACGTTTGGTTTTTGAGGAAATGCCACTGAGAGATGTTGCATCATGGTCTGCCATGCTCACTGCGTATGTGAACAATGGCAATCAAGAGTGTGGGCTGTCAGTGTTTCGGGATATGGTAAAGGATGGAGGTTTAAAACCTGACCAAGTGACTGCAGGATCAGTTTTATCCGGTTGTGCCCACTTGGGTCATCTTGGGTTGCTTGTGGGGAAATCAGTTCATGGGTTTATGGTCAAGAATGGATGGGAGTTGAATGTGGAGATTGGTACAGTTTTGGTTGACATGTATGCTAAGTGTGGGTTTTTGAAGGGAGCTGCAAGGGTTTTTGAATTGATGCAAGAAAGGAATGTCATGTCTTGGACTGCATTGATTTGTGGATCGGCACAACATGGCTACAGCAAAGCAGCGTTGTCTTTGTTTGAGATGATGCAAAAAGCTGGTGTAAAACCTAATGAATTGACTTTCACAGGAATTCTTAGTGCTTGTGTGCATACAGGACTTGTTGAGGAGGGCCGAAAATATTTCAAGTTAATTGAAGAAAGTGGCTTGGAGCCTAAAATTCATCATTATGGATGCATGGTTGATTTGTATGGCAAGGCAGGACTGTTAGAGGAAGCTTATGAGGTTATTAAGAAGATGAGATTTGAACCCAATGTTGTTGTCTGGAGTGCTTTTTTATGTGCTTGTAAGGAGCATAAACAGTTTGAGATGGCCGAACGAGTGGTTGAGCAGGTCATGAAGATGGTAAAACCAGATAACGATGGTGGGGTTTATTCTCTTATCTCAGATTTGTATGCTTTGAGTGGGAAGTGGCATGATGCAGAAAGAGTGAGGAATTTAATGGTCAGCCAACATGTGAGGAAGGCCAGGGGCTCTAGTTTTGTTAGAAGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

439

Amino Acids

49.01

Weight (kDa)

8.42

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13211 FvH4_3g13220
malus_domestica	MD10G1225900.v1.1
prunus_persica	Prupe.4G119500_v2.0.a1 Prupe.4G119600_v2.0.a1
pyrus_communis	pycom10g18980
rosa_chinensis	RchiOBHm_Chr5g0021561 RchiOBHm_Chr5g0021571 RchiOBHm_Chr7g0219451
rosa_laevigata	RLG00000032615
rosa_multiflora	Rmu_co8317561.1_g000001 Rmu_co8317561.1_g000002 Rmu_co8347725.1_g000001 Rmu_sc0002052.1_g000015 Rmu_sc0002052.1_g000016 Rmu_sc0002052.1_g000017 Rmu_sc0003767.1_g000012 Rmu_sc0023070.1_g000006 Rmu_sc0023070.1_g000007 Rmu_sc0023070.1_g000008
rosa_roxburghii	Rroxscaffold_1G00057070 Rroxscaffold_1G00057080 Rroxscaffold_1G00057090
rosa_rugosa	Rorug05G0067400 Rorug05G0067400 Rorug07G0185200
rosa_samantha	Rh5AG156800 Rh5BG156000 Rh5BG156100 Rh5BG156200 Rh5CG170300 Rh5CG170400 Rh5DG156600 Rh7AG328000 Rh7BG318000 Rh7CG345400
rosa_wichuraiana	Rw7G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1141
AclWI	GGATC	2 cut(s)	586, 805
AcoI	YGGCCR	2 cut(s)	282, 1131
AcsI	RAATTY	3 cut(s)	891, 978, 1255
AcvI	CACGTG	1 cut(s)	372
AfaI	GTAC	4 cut(s)	202, 305, 336, 688
AfiI	CCNNNNNNNGG	2 cut(s)	118, 210
AflIII	ACRYGT	2 cut(s)	702, 1273
AjnI	CCWGG	1 cut(s)	1286
AluBI	AGCT	4 cut(s)	72, 734, 857, 1037
AluI	AGCT	4 cut(s)	72, 734, 857, 1037
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	2 cut(s)	586, 805
AoxI	GGCC	4 cut(s)	282, 931, 1131, 1284
ApeKI	GCWGC	2 cut(s)	734, 824
ApoI	RAATTY	3 cut(s)	891, 978, 1255
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	931
BaeGI	GKGCMC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	1295
BbrPI	CACGTG	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	721, 836
BccI	CCATC	6 cut(s)	17, 539, 657, 1123, 1156, 1175
BcgI	CGANNNNNNTGC	2 cut(s)	378, 412
BciT130I	CCWGG	1 cut(s)	1288
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	1296
BfmI	CTRYAG	2 cut(s)	573, 814
BfuAI	ACCTGC	1 cut(s)	1141
BisI	GCNGC	2 cut(s)	735, 825
BlsI	GCNGC	2 cut(s)	736, 826
Bme1390I	CCNGG	1 cut(s)	1288
BmgT120I	GGNCC	1 cut(s)	931
BmiI	GGNNCC	1 cut(s)	972
BmrFI	CCNGG	1 cut(s)	1288
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	6 cut(s)	316, 470, 744, 837, 983, 1228
BmuI	ACTGGG	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	1105
BsaAI	YACGTR	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	1287
BsaWI	WCCGGW	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 210
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	1288
BseDI	CCNNGG	1 cut(s)	1287
BseGI	GGATG	5 cut(s)	331, 415, 550, 668, 998
BseLI	CCNNNNNNNGG	2 cut(s)	118, 210
BseMII	CTCAG	3 cut(s)	345, 440, 1218
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	941
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	2 cut(s)	721, 836
BshFI	GGCC	4 cut(s)	284, 933, 1133, 1286
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	591
BsiWI	CGTACG	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	118, 210
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	4 cut(s)	284, 933, 1133, 1286
Bsp1286I	GDGCHC	3 cut(s)	424, 601, 1295
Bsp143I	GATC	2 cut(s)	578, 797
BspANI	GGCC	4 cut(s)	284, 933, 1133, 1286
BspCNI	CTCAG	3 cut(s)	346, 441, 1217
BspHI	TCATGA	2 cut(s)	249, 1155
BspLI	GGNNCC	1 cut(s)	972
BspMAI	CTGCAG	1 cut(s)	577
BspMI	ACCTGC	1 cut(s)	1141
BspPI	GGATC	2 cut(s)	586, 805
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	1287
BssMI	GATC	2 cut(s)	578, 797
Bst2UI	CCWGG	1 cut(s)	1288
Bst4CI	ACNGT	6 cut(s)	149, 339, 367, 691, 1026, 1122
BstBAI	YACGTR	1 cut(s)	372
BstDEI	CTNAG	5 cut(s)	354, 449, 711, 896, 1204
BstF5I	GGATG	5 cut(s)	331, 415, 550, 668, 998
BstKTI	GATC	2 cut(s)	581, 800
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	578, 797
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	1288
BstNSI	RCATGY	2 cut(s)	706, 1277
BstSCI	CCNGG	1 cut(s)	1286
BstSFI	CTRYAG	2 cut(s)	573, 814
BstSLI	GKGCMC	1 cut(s)	601
BstV1I	GCAGC	2 cut(s)	721, 836
BsuRI	GGCC	4 cut(s)	284, 933, 1133, 1286
BtsCI	GGATG	5 cut(s)	331, 415, 550, 668, 998
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	446, 480, 528
BveI	ACCTGC	1 cut(s)	1141
CciI	TCATGA	2 cut(s)	249, 1155
Cfr13I	GGNCC	1 cut(s)	931
Csp6I	GTAC	4 cut(s)	201, 304, 335, 687
CviQI	GTAC	4 cut(s)	201, 304, 335, 687
DdeI	CTNAG	5 cut(s)	354, 449, 711, 896, 1204
DpnI	GATC	2 cut(s)	580, 799
DpnII	GATC	2 cut(s)	578, 797
DraI	TTTAAA	1 cut(s)	555
EaeI	YGGCCR	2 cut(s)	282, 1131
Eco24I	GRGCYC	1 cut(s)	1295
Eco72I	CACGTG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	891
EcoRII	CCWGG	1 cut(s)	1286
EcoT22I	ATGCAT	1 cut(s)	998
EcoT38I	GRGCYC	1 cut(s)	1295
Fnu4HI	GCNGC	2 cut(s)	735, 825
FokI	GGATG	5 cut(s)	338, 422, 557, 675, 1005
FriOI	GRGCYC	1 cut(s)	1295
Fsp4HI	GCNGC	2 cut(s)	735, 825
FspBI	CTAG	1 cut(s)	1296
GluI	GCNGC	2 cut(s)	735, 825
GsuI	CTGGAG	1 cut(s)	1105
HaeIII	GGCC	4 cut(s)	284, 933, 1133, 1286
HapII	CCGG	1 cut(s)	591
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	2 cut(s)	70, 1035
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	591
Hpy166II	GTNNAC	3 cut(s)	335, 493, 700
Hpy188I	TCNGA	1 cut(s)	1207
Hpy188III	TCNNGA	7 cut(s)	218, 250, 506, 530, 655, 1084, 1156
Hpy8I	GTNNAC	3 cut(s)	335, 493, 700
HpyAV	CCTTC	3 cut(s)	117, 721, 1276
HpyCH4III	ACNGT	6 cut(s)	149, 339, 367, 691, 1026, 1122
HpyCH4IV	ACGT	3 cut(s)	306, 371, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	5 cut(s)	354, 449, 711, 896, 1204
HpySE526I	ACGT	3 cut(s)	306, 371, 424
Kzo9I	GATC	2 cut(s)	578, 797
LmnI	GCTCC	4 cut(s)	109, 731, 970, 1111
Lsp1109I	GCAGC	2 cut(s)	721, 836
LweI	GCATC	6 cut(s)	316, 470, 744, 837, 983, 1228
MaeI	CTAG	1 cut(s)	1296
MaeII	ACGT	3 cut(s)	306, 371, 424
MaeIII	GTNAC	2 cut(s)	367, 568
MalI	GATC	2 cut(s)	580, 799
MboI	GATC	2 cut(s)	578, 797
MboII	GAAGA	5 cut(s)	55, 370, 968, 1066, 1171
MhlI	GDGCHC	3 cut(s)	424, 601, 1295
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	7 cut(s)	76, 749, 875, 891, 951, 978, 1255
MluNI	TGGCCA	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	51
Mox20I	TGGCCA	1 cut(s)	284
Mph1103I	ATGCAT	1 cut(s)	998
MroXI	GAANNNNTTC	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	6 cut(s)	35, 209, 554, 950, 1050, 1259
MslI	CAYNNNNRTG	4 cut(s)	237, 276, 987, 1160
Msp20I	TGGCCA	1 cut(s)	284
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	1 cut(s)	1288
MvaI	CCWGG	1 cut(s)	1288
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeII	GATC	2 cut(s)	578, 797
NlaIV	GGNNCC	1 cut(s)	972
NmuCI	GTSAC	2 cut(s)	367, 568
NsiI	ATGCAT	1 cut(s)	998
NspI	RCATGY	2 cut(s)	706, 1277
PagI	TCATGA	2 cut(s)	249, 1155
PciI	ACATGT	2 cut(s)	702, 1273
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	214
Pfl23II	CGTACG	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	736, 826
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
Ppu21I	YACGTR	1 cut(s)	372
PscI	ACATGT	2 cut(s)	702, 1273
Psp6I	CCWGG	1 cut(s)	1286
PspCI	CACGTG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	1286
PspLI	CGTACG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	972
PspPI	GGNCC	1 cut(s)	931
PstI	CTGCAG	1 cut(s)	577
RsaI	GTAC	4 cut(s)	202, 305, 336, 688
RsaNI	GTAC	4 cut(s)	201, 304, 335, 687
RseI	CAYNNNNRTG	4 cut(s)	237, 276, 987, 1160
SaqAI	TTAA	6 cut(s)	35, 209, 554, 950, 1050, 1259
SatI	GCNGC	2 cut(s)	735, 825
Sau3AI	GATC	2 cut(s)	578, 797
Sau96I	GGNCC	1 cut(s)	931
ScrFI	CCNGG	1 cut(s)	1288
SduI	GDGCHC	3 cut(s)	424, 601, 1295
SfaNI	GCATC	6 cut(s)	316, 470, 744, 837, 983, 1228
SfcI	CTRYAG	2 cut(s)	573, 814
SmiMI	CAYNNNNRTG	4 cut(s)	237, 276, 987, 1160
Sse9I	AATT	7 cut(s)	76, 749, 875, 891, 951, 978, 1255
SspI	AATATT	1 cut(s)	941
SspMI	CTAG	1 cut(s)	1296
StyD4I	CCNGG	1 cut(s)	1286
TaaI	ACNGT	6 cut(s)	149, 339, 367, 691, 1026, 1122
TaiI	ACGT	3 cut(s)	309, 374, 427
TaqI	TCGA	2 cut(s)	342, 398
TasI	AATT	7 cut(s)	76, 749, 875, 891, 951, 978, 1255
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	6 cut(s)	35, 209, 554, 950, 1050, 1259
Tru9I	TTAA	6 cut(s)	35, 209, 554, 950, 1050, 1259
TscAI	CASTG	3 cut(s)	453, 487, 528
TseFI	GTSAC	2 cut(s)	367, 568
TseI	GCWGC	2 cut(s)	734, 824
Tsp45I	GTSAC	2 cut(s)	367, 568
TspDTI	ATGAA	6 cut(s)	266, 360, 629, 888, 971, 1172
TspRI	CASTG	3 cut(s)	453, 487, 528
XapI	RAATTY	3 cut(s)	891, 978, 1255
XceI	RCATGY	2 cut(s)	706, 1277
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	1 cut(s)	1296
Zsp2I	ATGCAT	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.