Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003267

Physical Location & Seq

Genomic Coordinates Reverse (-)

15713094 .. 15714044

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCACCGGCAGTCTGTACCTTTCGACAGCTTCTCCATTCTCTTTACTCTAAAATCATGTACCCAATTGCATAACCACGCAACCATTCAACACCTCCATTCCCATATCGTTAAACTCGGGTTTGATTCTCACGTATATGTGGCCACTTCACTTCTCCACGCTTACGTCGTCGGAGCAGAACAGGTTTTTGAGTTGATGCAAGAGAAGAATGTGATGGCTTGGACCGCATTGATTTGTGGATCGGCACAACATGGATACAGCAAAGAAGCATTGTGTTTGTTTGAGATGATGCAAAACAGCGGCGTAAGACCTAATGAACTGACTTTTACAGGAGTTCTCAGTGCTTGTGTGAACACGAGACTAGTTGAGGAGGGTCGAACATATTTCAATTTGATTGAAGAAAGTGGCTTGGAGCTTCGGATTCAGCATTATGGATGCATGGTCGATTTGTATGGCAAGGCGGGGCTGTTAGAGGAAGCCTATGATTTTATTAAGAACATGAGACTTGAACCCAATATTGCTGTCTGGGGAGCTTTTTTGTCGGCTTGCAAGGAGCATAAACAGTTTGAGATGGCCGAAAGAGTTGTTGAGGAGGTCATGAAGATGGTGAAACCAGAGAATGATAGTGGTTACTCTCTTATCGCCGATTTGTATGTTTTGGGTGGAAAGTGGGATGATGCTGAAAGAGTGAGGAAATTAATGGTGAACCACAAGGTGAGGAAGGTTAGGGGCTCTAGTTTTGTTCAAGTGGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

252

Amino Acids

28.63

Weight (kDa)

6.17

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	69 - 118	3.1e-11	PPR repeat family
PPR_3	PF13812	70 - 118	5.1e-06	Pentatricopeptide repeat domain
E_motif	PF20431	186 - 249	3.1e-09	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13211 FvH4_3g13220
malus_domestica	MD10G1225900.v1.1
prunus_persica	Prupe.4G119500_v2.0.a1 Prupe.4G119600_v2.0.a1
pyrus_communis	pycom10g18980
rosa_chinensis	RchiOBHm_Chr5g0021561 RchiOBHm_Chr5g0021571 RchiOBHm_Chr7g0219451
rosa_laevigata	RLG00000032615
rosa_multiflora	Rmu_co8317561.1_g000001 Rmu_co8317561.1_g000002 Rmu_co8347725.1_g000001 Rmu_sc0002052.1_g000015 Rmu_sc0002052.1_g000016 Rmu_sc0002052.1_g000017 Rmu_sc0003767.1_g000012 Rmu_sc0023070.1_g000006 Rmu_sc0023070.1_g000007 Rmu_sc0023070.1_g000008
rosa_roxburghii	Rroxscaffold_1G00057070 Rroxscaffold_1G00057080 Rroxscaffold_1G00057090
rosa_rugosa	Rorug05G0067400 Rorug05G0067400 Rorug07G0185200
rosa_samantha	Rh5AG156800 Rh5BG156000 Rh5BG156100 Rh5BG156200 Rh5CG170300 Rh5CG170400 Rh5DG156600 Rh7AG328000 Rh7BG318000 Rh7CG345400
rosa_wichuraiana	Rw7G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	225, 300, 461
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	2 cut(s)	141, 573
AdeI	CACNNNGTG	1 cut(s)	715
AfaI	GTAC	2 cut(s)	18, 61
AgsI	TTSAA	5 cut(s)	89, 388, 398, 509, 746
AhlI	ACTAGT	1 cut(s)	361
AluBI	AGCT	3 cut(s)	30, 415, 533
AluI	AGCT	3 cut(s)	30, 415, 533
Alw26I	GTCTC	2 cut(s)	352, 496
AlwI	GGATC	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	2 cut(s)	141, 573
AseI	ATTAAT	1 cut(s)	698
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	619, 715, 727
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	734
BauI	CACGAG	1 cut(s)	355
BccI	CCATC	3 cut(s)	208, 565, 598
BciVI	GTATCC	1 cut(s)	248
BcoDI	GTCTC	2 cut(s)	352, 496
BcuI	ACTAGT	1 cut(s)	361
BfaI	CTAG	2 cut(s)	362, 735
BfuI	GTATCC	1 cut(s)	248
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	222
BmsI	GCATC	4 cut(s)	186, 279, 425, 667
BsaAI	YACGTR	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bse118I	RCCGGY	1 cut(s)	6
BseGI	GGATG	2 cut(s)	440, 679
BseMII	CTCAG	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	383, 605
BshFI	GGCC	2 cut(s)	143, 575
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	7
BsmAI	GTCTC	2 cut(s)	352, 496
BsnI	GGCC	2 cut(s)	143, 575
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	734
Bsp143I	GATC	1 cut(s)	239
BspACI	CCGC	3 cut(s)	225, 300, 461
BspANI	GGCC	2 cut(s)	143, 575
BspCNI	CTCAG	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	597
BspPI	GGATC	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	6
BssAI	RCCGGY	1 cut(s)	6
BssMI	GATC	1 cut(s)	239
BssSI	CACGAG	1 cut(s)	355
Bst2BI	CACGAG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	564
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	440, 679
BstKTI	GATC	1 cut(s)	242
BstMAI	GTCTC	2 cut(s)	352, 496
BstMBI	GATC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	143, 575
BtsCI	GGATG	2 cut(s)	440, 679
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	547
CciI	TCATGA	1 cut(s)	597
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	17, 60
CviAII	CATG	5 cut(s)	57, 251, 439, 499, 598
CviQI	GTAC	2 cut(s)	17, 60
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
DraIII	CACNNNGTG	1 cut(s)	715
EaeI	YGGCCR	2 cut(s)	141, 573
Eco24I	GRGCYC	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	440
EcoT38I	GRGCYC	1 cut(s)	734
FaeI	CATG	5 cut(s)	60, 254, 442, 502, 601
FatI	CATG	5 cut(s)	56, 250, 438, 498, 597
FauI	CCCGC	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	2 cut(s)	447, 686
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	2 cut(s)	362, 735
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	143, 575
HapII	CCGG	1 cut(s)	7
Hin1II	CATG	5 cut(s)	60, 254, 442, 502, 601
HinfI	GANTC	2 cut(s)	125, 421
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	3 cut(s)	619, 715, 727
Hpy166II	GTNNAC	2 cut(s)	352, 706
Hpy188I	TCNGA	2 cut(s)	173, 420
Hpy188III	TCNNGA	1 cut(s)	598
Hpy8I	GTNNAC	2 cut(s)	352, 706
Hpy99I	CGWCG	2 cut(s)	170, 173
HpyAV	CCTTC	1 cut(s)	715
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4IV	ACGT	2 cut(s)	132, 165
HpyCH4V	TGCA	6 cut(s)	4, 70, 199, 292, 438, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	2 cut(s)	132, 165
Hsp92II	CATG	5 cut(s)	60, 254, 442, 502, 601
Kzo9I	GATC	1 cut(s)	239
LmnI	GCTCC	4 cut(s)	173, 412, 530, 553
LpnPI	CCDG	5 cut(s)	20, 167, 315, 511, 627
LweI	GCATC	4 cut(s)	186, 279, 425, 667
MaeI	CTAG	2 cut(s)	362, 735
MaeII	ACGT	2 cut(s)	132, 165
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	3 cut(s)	217, 410, 613
MfeI	CAATTG	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	734
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	3 cut(s)	65, 388, 695
MluNI	TGGCCA	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	8 cut(s)	104, 361, 364, 466, 583, 586, 684, 711
Mox20I	TGGCCA	1 cut(s)	143
Mph1103I	ATGCAT	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	3 cut(s)	111, 492, 698
MslI	CAYNNNNRTG	2 cut(s)	135, 602
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	1 cut(s)	7
MunI	CAATTG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	5 cut(s)	60, 254, 442, 502, 601
NsiI	ATGCAT	1 cut(s)	440
PagI	TCATGA	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	125, 421
PkrI	GCNGC	1 cut(s)	302
Ppu21I	YACGTR	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	698
PspPI	GGNCC	1 cut(s)	222
RsaI	GTAC	2 cut(s)	18, 61
RsaNI	GTAC	2 cut(s)	17, 60
RseI	CAYNNNNRTG	2 cut(s)	135, 602
SaqAI	TTAA	3 cut(s)	111, 492, 698
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	1 cut(s)	239
Sau96I	GGNCC	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	734
SfaNI	GCATC	4 cut(s)	186, 279, 425, 667
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	2 cut(s)	135, 602
SpeI	ACTAGT	1 cut(s)	361
Sse9I	AATT	3 cut(s)	65, 388, 695
SsiI	CCGC	3 cut(s)	225, 300, 461
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	2 cut(s)	362, 735
TaaI	ACNGT	1 cut(s)	564
TaiI	ACGT	2 cut(s)	135, 168
TaqI	TCGA	3 cut(s)	24, 376, 444
TasI	AATT	3 cut(s)	65, 388, 695
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	125, 421
Tru1I	TTAA	3 cut(s)	111, 492, 698
Tru9I	TTAA	3 cut(s)	111, 492, 698
TscAI	CASTG	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	330, 614
TspRI	CASTG	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	222
VspI	ATTAAT	1 cut(s)	698
XspI	CTAG	2 cut(s)	362, 735
Zsp2I	ATGCAT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.