Rh5BG156000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003267
Physical Location & Seq
Reverse (-)
15927407 .. 15927880
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG156000.1

Sequence Viewer

Length: 474 bp
ATGCAAAACGCCGGTGTAAGACCTAATGAACTGACTTTTACAGGAGTTCGCAGTGCTTGTGTGAACACGGGACTAGTTGAGGAGGGTCGAAAATATTTCAATTTGATTGAAGAAAGTGGCTTGGAGCTTCGGATTCAGCATTATGGATGCATGGTCGATTTGTATGGTAAGGCAGGCCTGTTAGAGGAAGCGTATGATTTCATTAAGAAAATGAGACTTGAACCCAATATTGCTGTCTGGGGAGCTTTTTTGTCGGCTTGCAAGGAGCATAAACAGTTTGAGATGGCCGAAAGAGTTGTTGAGGAGGTCATGAAGATGGTGAAACCAGAGAATGATAGTGGGGTTTACACTCTTATCTCCGATTTGTATGTTTTGGGTGGAAAGTGGGATGATGCTGAAAGAGTGAGGAAATTAATGGTGAACCACAAGGTGAGGAAGGTTAGGGGCTCTAGTTTTGTTCAAGTGGATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

157

Amino Acids

17.88

Weight (kDa)

6.32

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 90 - 154 1.2e-09 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 285
AdeI CACNNNGTG 1 cut(s) 430
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 4 cut(s) 100, 110, 221, 461
AhlI ACTAGT 1 cut(s) 73
AluBI AGCT 2 cut(s) 127, 245
AluI AGCT 2 cut(s) 127, 245
Alw26I GTCTC 1 cut(s) 208
AoxI GGCC 2 cut(s) 175, 285
AseI ATTAAT 1 cut(s) 413
AsuHPI GGTGA 3 cut(s) 331, 430, 442
BanII GRGCYC 1 cut(s) 449
BccI CCATC 2 cut(s) 277, 310
BcoDI GTCTC 1 cut(s) 208
BcuI ACTAGT 1 cut(s) 73
BfaI CTAG 2 cut(s) 74, 450
BmsI GCATC 2 cut(s) 137, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 11
BseGI GGATG 2 cut(s) 152, 394
BseLI CCNNNNNNNGG 1 cut(s) 184
BseRI GAGGAG 2 cut(s) 95, 317
BshFI GGCC 2 cut(s) 177, 287
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 2 cut(s) 177, 287
Bsp1286I GDGCHC 1 cut(s) 449
BspANI GGCC 2 cut(s) 177, 287
BspHI TCATGA 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 175, 259
BstENI CCTNNNNNAGG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 152, 394
BstMAI GTCTC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 177, 287
BtsCI GGATG 2 cut(s) 152, 394
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 175, 259
CciI TCATGA 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 11
CviAII CATG 2 cut(s) 151, 310
CviJI RGCY 7 cut(s) 120, 127, 177, 245, 257, 287, 447
CviKI_1 RGCY 7 cut(s) 120, 127, 177, 245, 257, 287, 447
DraIII CACNNNGTG 1 cut(s) 430
EaeI YGGCCR 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 449
EcoNI CCTNNNNNAGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 449
FaeI CATG 2 cut(s) 154, 313
FaiI YATR 7 cut(s) 144, 152, 165, 195, 270, 311, 369
FaqI GGGAC 1 cut(s) 84
FatI CATG 2 cut(s) 150, 309
FokI GGATG 2 cut(s) 159, 401
FriOI GRGCYC 1 cut(s) 449
FspBI CTAG 2 cut(s) 74, 450
HaeIII GGCC 2 cut(s) 177, 287
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 154, 313
HinfI GANTC 1 cut(s) 133
HpaII CCGG 1 cut(s) 12
HphI GGTGA 3 cut(s) 331, 430, 442
Hpy166II GTNNAC 3 cut(s) 64, 346, 421
Hpy188I TCNGA 2 cut(s) 132, 361
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 3 cut(s) 64, 346, 421
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 4, 150, 261
Hsp92II CATG 2 cut(s) 154, 313
LmnI GCTCC 3 cut(s) 124, 242, 265
LpnPI CCDG 6 cut(s) 25, 27, 159, 191, 223, 339
LweI GCATC 2 cut(s) 137, 382
MaeI CTAG 2 cut(s) 74, 450
MboII GAAGA 2 cut(s) 122, 325
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 2 cut(s) 100, 410
MnlI CCTC 7 cut(s) 73, 76, 178, 295, 298, 399, 426
Mph1103I ATGCAT 1 cut(s) 152
MseI TTAA 2 cut(s) 204, 413
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 1 cut(s) 12
NlaIII CATG 2 cut(s) 154, 313
NsiI ATGCAT 1 cut(s) 152
PagI TCATGA 1 cut(s) 309
PceI AGGCCT 1 cut(s) 177
PfeI GAWTC 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 2 cut(s) 204, 413
SduI GDGCHC 1 cut(s) 449
SetI ASST 6 cut(s) 25, 129, 247, 309, 432, 441
SfaNI GCATC 2 cut(s) 137, 382
SgrAI CRCCGGYG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 314
SpeI ACTAGT 1 cut(s) 73
Sse9I AATT 2 cut(s) 100, 410
SseBI AGGCCT 1 cut(s) 177
SspI AATATT 2 cut(s) 95, 229
SspMI CTAG 2 cut(s) 74, 450
StuI AGGCCT 1 cut(s) 177
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 88, 156
TasI AATT 2 cut(s) 100, 410
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 204, 413
Tru9I TTAA 2 cut(s) 204, 413
TscAI CASTG 1 cut(s) 58
TspDTI ATGAA 3 cut(s) 42, 190, 326
TspRI CASTG 1 cut(s) 58
VspI ATTAAT 1 cut(s) 413
XagI CCTNNNNNAGG 1 cut(s) 182
XspI CTAG 2 cut(s) 74, 450
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.